Activity of Streptomyces globosus OPF-9 against the important pathogen Alternaria longipes and biocontrol mechanisms revealed by multi-omic analyses DOI

Weizhen Wang,

Xuetang Chen,

Jiling Ma

и другие.

Pesticide Biochemistry and Physiology, Год журнала: 2024, Номер 204, С. 106094 - 106094

Опубликована: Авг. 22, 2024

Язык: Английский

First insights into antimicrobial resistance, toxigenic profiles, and genetic diversity in Bacillus cereus isolated from Chinese sausages DOI Creative Commons

Danyu Xiao,

Cuihong Tong,

Tianmu Yang

и другие.

LWT, Год журнала: 2023, Номер 181, С. 114717 - 114717

Опубликована: Апрель 5, 2023

Язык: Английский

Процитировано

6
PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli DOI Creative Commons
Julián Paganini, Jesse Kerkvliet, Lisa Vader

и другие.

Microbial Genomics, Год журнала: 2024, Номер 10(2)

Опубликована: Фев. 20, 2024

Accurate reconstruction of Escherichia coli antibiotic resistance gene (ARG) plasmids from Illumina sequencing data has proven to be a challenge with current bioinformatic tools. In this work, we present an improved method reconstruct E. using short reads. We developed plasmidEC, ensemble classifier that identifies plasmid-derived contigs by combining the output three different binary classification showed plasmidEC is especially suited classify derived ARG high recall 0.941. Additionally, optimized gplas, graph-based tool bins plasmid-predicted into distinct plasmid predictions. Gplas2 more effective at recovering large coverage variations and can combined any classifier. The combination gplas2 completeness (median=0.818) F1-Score (median=0.812) when reconstructing exceeded binning capacity reference-based MOB-suite. absence long-read data, our offers excellent alternative in .

Язык: Английский

Процитировано

2
A Burkholderia cenocepacia -like environmental isolate strongly inhibits the plant fungal pathogen Zymoseptoria tritici DOI Creative Commons
Tingting Song, Suyash Gupta,

Yael Sorokin

и другие.

Applied and Environmental Microbiology, Год журнала: 2024, Номер 90(5)

Опубликована: Апрель 16, 2024

Fungal phytopathogens cause significant reductions in agricultural yields annually, and overusing chemical fungicides for their control leads to environmental pollution the emergence of resistant pathogens. Exploring natural isolates with strong antagonistic effects against pathogens can improve our understanding ecology develop new treatments future. We isolated characterized a novel bacterial strain associated species

Язык: Английский

Процитировано

2
Comparative genomic analysis of strain Priestia megaterium B1 reveals conserved potential for adaptation to endophytism and plant growth promotion DOI Creative Commons
Fatma Mahmoud, Karin Pritsch, Roberto Siani

и другие.

Microbiology Spectrum, Год журнала: 2024, Номер 12(8)

Опубликована: Июнь 25, 2024

In our study, we aimed to explore the genomic and phenotypic traits of

Язык: Английский

Процитировано

2
Activity of Streptomyces globosus OPF-9 against the important pathogen Alternaria longipes and biocontrol mechanisms revealed by multi-omic analyses DOI

Weizhen Wang,

Xuetang Chen,

Jiling Ma

и другие.

Pesticide Biochemistry and Physiology, Год журнала: 2024, Номер 204, С. 106094 - 106094

Опубликована: Авг. 22, 2024

Язык: Английский

Процитировано

2