Molecular and acoustic evidence for large-scale underestimation of frog species diversity on New Guinea
Frontiers of Biogeography,
Год журнала:
2025,
Номер
18
Опубликована: Май 8, 2025
Species
are
fundamental
units
in
biology;
however,
information
on
species
diversity
and
distribution
remain
scarce
for
most
taxonomic
groups,
especially
tropical
rainforests.
Such
knowledge
gaps
particularly
acute
amphibians,
the
threatened
group
of
vertebrates,
which
new
continue
to
be
described
at
a
high
rate.
Herein,
using
molecular-based
approaches,
we
provide
estimates
frogs
(Anura)
New
Guinea
nearby
islands,
one
biologically
diverse
regions
world.
We
first
characterised
geographic
sampling
all
available
mitochondrial
DNA
sequences
from
native
frog
species.
This
led
us
identify
important
molecular
western
half
that
partially
filled
by
adding
534
(16S
rRNA).
Large
territories
uncharted,
westernmost
part
central
cordillera
Guinea.
Using
our
16S
rRNA
dataset,
then
delimited
Molecular
Operational
Taxonomic
Units
(MOTUs),
subset
was
bioacoustically
analysed.
From
total
369
MOTUs,
found
190
could
not
assigned
any
taxon.
Amongst
these,
123
represented
specimens
collected
19
were
supported
as
distinct
bioacoustics,
confirming
this
portion
island
is
home
many
unrecognised
Based
estimated
level
undescribed
taxa
areas
data
available,
extrapolate
neighbouring
islands
host
800–1,200
species,
with
only
560
date.
assembled
comprehensive
dataset
date
rRNA)
islands.
candidate
bioacoustic
data.
actual
number
between
800
1,200.
Parts
exhibit
species-diversity
levels
comparable
similarly
sized
Amazonia
Madagascar.
Most
region
likely
confined
restricted
geographical
and,
thus,
sensitive
both
land
use
climate
change.
Язык: Английский
A new microendemic gecko from the small forest fragments of south-eastern Madagascar (Squamata, Gekkonidae, Paragehyra)
ZooKeys,
Год журнала:
2025,
Номер
1240, С. 1 - 38
Опубликована: Июнь 2, 2025
Historically,
herpetological
research
in
Madagascar
has
largely
overlooked
small
forest
fragments
outside
the
country
protected
area
network.
Despite
substantial
declines
species
diversity
compared
to
large
continuous
forests,
these
continue
sustain
diverse
communities
and
frequently
harbour
microendemic
species.
We
describe
a
new
gecko
belonging
genus
Paragehyra
,
apparently
isolated
surrounding
Andringitra
Massif
south-eastern
Madagascar.
tsaranoro
sp.
nov.
is
different
from
its
congeneric
based
on
genetic
distances
mitochondrial
markers
(16S
COI),
phylogenetic
position,
lack
of
haplotype
sharing
at
one
nuclear
locus
(POMC).
The
also
distinguishable
congeners
combination
14
morphological
characters.
New
data
are
provided
for
sympatric
P.
felicitae
we
propose
assessment
conservation
status
within
IUCN
Red
List.
mostly
found
managed
by
local
(community-managed
reserves)
legally
areas.
This
study
highlights
importance
community-based
management
herpetofauna,
particularly
regions
heavily
impacted
anthropogenic
pressure
unsuitable
forest-dwelling
findings
emphasise
conducting
fragments,
as
they
essential
completing
inventory
Malagasy
herpetofauna.
Язык: Английский
In Vouchers We (Hope to) Trust: Unveiling Hidden Errors in GenBank's Tetrapod Taxonomic Foundations
Molecular Ecology,
Год журнала:
2025,
Номер
unknown
Опубликована: Июнь 3, 2025
ABSTRACT
Genetic
repositories
are
invaluable
resources
foundational
to
various
biological
disciplines.
While
their
data
and
metadata
reliability
essential
for
robust
research
outcomes,
numerous
studies
have
highlighted
quality
consistency
issues.
Here,
we
detect
quantify
errors
at
the
most
fundamental
level
by
analysing
congruence
of
sequences
derived
from
same
genetic
marker
specimen
voucher
across
tetrapods.
Our
analysis
reveals
that
32%
re‐sequenced
vouchers
(with
identical
field
or
museum
numbers)
yield
unequal
sequences,
ranging
a
few
mutations
significant
divergences
(0.06%–33.95%).
These
may
result
sample
misidentification,
labelling
errors,
fidelity
disparities
between
sequencing
methods,
contamination
stages
process.
findings
demonstrate
within
GenBank
its
basal
suggest
that,
although
undetectable,
similar
error
rate
likely
exists
in
non‐re‐sequenced
data.
previously
overlooked
concerning
because
they
arise
replicated
experiments,
which
uncommon,
raise
serious
questions
about
specimens.
Such
can
compromise
accuracy
biodiversity
assessments
(e.g.,
taxonomic
assessment,
eDNA
barcoding),
phylogenetic
analyses
conservation
planning
artificially
inflating
intraspecific
divergence
misidentifying
(to‐be‐described)
species.
Additionally,
large‐scale
rely
on
such
be
compromised.
results
call
protocols
ensuring
traceability
specimens
tissues
during
whole
process
generation,
deposition
database.
We
propose
third‐party
annotation
system
individual
records
would
allow
flagging
common
alert
both
original
submitter
all
users
potential
problems
without
modifying
records.
Язык: Английский
Kimboza, a Small Lowland Forest With an Outstanding Herpetofauna Diversity in East Africa
Ecology and Evolution,
Год журнала:
2024,
Номер
14(10)
Опубликована: Окт. 1, 2024
ABSTRACT
The
Eastern
Arc
Mountains
(EAM)
and
Coastal
forests
of
Tanzania
are
renowned
for
harboring
large
number
threatened
endemic
vertebrate
species,
yet
most
these
areas
have
been
partially
studied.
Kimboza
Nature
Forest
Reserve
(KNFR)
is
a
small
forest
which
in
transition
between
the
EAM
forests,
among
poorly
surveyed
amphibians
reptiles.
We
conducted
systematic
surveys
across
KNFR
2012
2020
2023
using
range
approaches
with
aim
establishing
comprehensive
updated
list
reptile
amphibian
species
assess
contribution
to
KNFR's
herpetofauna.
identified
77
29
48
reptiles,
substantially
updating
previous
lists.
Three
(
Kinyongia
magomberae
,
Trachylepis
boulengeri
Philothamnus
macrops
)
represent
extensions
from
previously
known
ranges.
Fourteen
East
Africa,
11
them
being
restricted
Tanzania.
These
results
make
richest
reserve
herpetofauna
per
square
km
Tanzania,
similar
its
composition
Coastal,
rather
than
forests.
With
caveats
concerning
taxonomic
uncertainties
inequalities
sampling
intensity
region,
this
study
shows
that
an
important
area
deserves
conservation
attention.
KNFR,
like
other
under
significant
pressure
anthropogenic
activities
call
urgent
action
protect
but
rich
forest.
Язык: Английский