A long-term ecological research data set from the marine genetic monitoring programme ARMS-MBON 2018-2020 DOI Creative Commons
Nauras Daraghmeh, Katrina Exter, Justine Pagnier

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Сен. 27, 2024

ABSTRACT Molecular methods such as DNA/eDNA metabarcoding have emerged useful tools to document biodiversity of complex communities over large spatio-temporal scales. We established an international Marine Biodiversity Observation Network (ARMS-MBON) combining standardised sampling using autonomous reef monitoring structures (ARMS) with for genetic marine hard-bottom benthic communities. Here, we present the data our first campaign comprising 56 ARMS units deployed in 2018-2019 and retrieved 2018-2020 across 15 observatories along coasts Europe adjacent regions. describe open-access set (image, genetic, metadata) explore show its potential ecological research. Our analysis shows that recovered more than 60 eukaryotic phyla capturing diversity up ∼5,500 amplicon sequence variants ∼1,800 operational taxonomic units, ∼250 ∼50 species per observatory cytochrome c oxidase subunit I (COI) 18S rRNA marker genes, respectively. Further, detected threatened, vulnerable non-indigenous often targeted biological monitoring. while deployment duration does not drive estimates, effort sequencing depth do. recommend should be at least three six months during main growth season use resources efficiently possible post-sequencing curation is applied enable statistical comparison entities. suggest used programmes long-term research encourage adoption ARMS-MBON protocols.

Язык: Английский

A multidisciplinary approach to describe population structure of Solea solea in the Mediterranean Sea DOI Creative Commons

Rachele Corti,

Elisabetta Piazza,

Enrico Nicola Armelloni

и другие.

Frontiers in Marine Science, Год журнала: 2024, Номер 11

Опубликована: Май 1, 2024

Investigating marine species population structure in a multidisciplinary framework can reveal signatures of potential local adaptation and the consequences for management conservation. In this study we delineate common sole ( Solea solea ) Mediterranean Sea using genomic otolith data, based on single nucleotide polymorphism (SNPs) markers, shape trace element composition data. We correlated SNPs with environmental spatial variables to evaluate impact selected features actual structure. Specifically, used seascape genetics approach redundancy (RDA) genetic-environmental association (GEA) analysis identify loci potentially involved adaptation. Finally, putative functional annotation was investigated detect genes associated detected patterns neutral adaptive genetic variation. Results from both data suggested significant divergence among populations sole, confirming clear separation between Western Eastern Sea, as well distinct cluster corresponding Adriatic Sea. Evidence fine-scale observed at outlier level further differentiation Adriatic. Longitude salinity variation accounted most wide fine The GEA processes under highly structured differentiation. RDA distribution could partially explain Our not only indicates that is led primarily by because low connectivity due segregation limited dispersal, but it also suggests presence These results should be taken into account support optimize assessment stock units, including review possible redefinition fishery units.

Язык: Английский

Процитировано

3
A Long‐Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS‐MBON 2018–2020 DOI Creative Commons
Nauras Daraghmeh, Katrina Exter, Justine Pagnier

и другие.

Molecular Ecology Resources, Год журнала: 2025, Номер unknown

Опубликована: Янв. 31, 2025

Molecular methods such as DNA/eDNA metabarcoding have emerged useful tools to document the biodiversity of complex communities over large spatio-temporal scales. We established an international Marine Biodiversity Observation Network (ARMS-MBON) combining standardised sampling using autonomous reef monitoring structures (ARMS) with for genetic marine hard-bottom benthic communities. Here, we present data our first campaign comprising 56 ARMS units deployed in 2018-2019 and retrieved 2018-2020 across 15 observatories along coasts Europe adjacent regions. describe open-access set (image, metadata) explore show its potential ecological research. Our analysis shows that recovered more than 60 eukaryotic phyla capturing diversity up ~5500 amplicon sequence variants ~1800 operational taxonomic units, ~250 ~50 species per observatory cytochrome c oxidase subunit I (COI) 18S rRNA marker genes, respectively. Further, detected threatened, vulnerable non-indigenous often targeted biological monitoring. while deployment duration does not drive estimates, effort sequencing depth do. recommend should be at least 3-6 months during main growth season use resources efficiently possible post-sequencing curation is applied enable statistical comparison entities. suggest used programs long-term research encourage adoption ARMS-MBON protocols.

Язык: Английский

Процитировано

0
Seascape Genomics of Elacatinus punctiulatus (Ginsburg, 1938): Understanding the Historical and Contemporary Drivers of Population Structure in the Gulf of California DOI Open Access
Vladimir Salvador De Jesús‐Bonilla, Alejandra Quintero‐Grijalva, Pedro Cruz‐Hernández

и другие.

Molecular Ecology, Год журнала: 2025, Номер unknown

Опубликована: Янв. 31, 2025

The genomic diversity and population structure of marine species represents a complex mosaic shaped by historical contemporary environmental seascape features that maintain or alter it over time. Gulf California (GC) is an interior sea with dynamic history during its formation oceanographic complexity; hence, suitable system to test the effect factors on in species. We investigated redhead goby (Elacatinus puncticulatus; Ginsburg, 1938), cryptobenthic fish, gain insights into drivers shaping GC. A total 4802 SNPs markers were analysed, 3775 loci classified as neutral 27 outlier potentially under selection. Both demonstrated structure, showing two main groups corresponding northern southern locatities. identified additional genetic group emerging central area sampled localities. Genetic differentiation between North South regions demographic simulations was consistent ancient divergence (1.04 Mya) secondary contact (0.15 Mya). association analysis revealed possible adaptive scenario linked ocean temperature. study highlights importance events, factors, circulation E. puncticulatus populations

Язык: Английский

Процитировано

0
A Survey of Mammal and Fish Genetic Diversity Across the Global Protected Area Network DOI Creative Commons
Chloé Schmidt, Eleana Karachaliou, Amy G. Vandergast

и другие.

Conservation Letters, Год журнала: 2025, Номер 18(2)

Опубликована: Март 1, 2025

ABSTRACT Global conservation targets aim to expand protected areas and maintain species’ genetic diversity. Whether capture diversity is unclear. We examined this question using a global sample of nuclear population‐level microsatellite data comprising genotypes from 2513 sites, 134,183 individuals, 176 mammal marine fish species. The differentiation samples inside outside were similar, with some evidence for higher in small‐bodied mammals. Mammal populations, particularly large species, tended be more genetically diverse when near multiple areas, regardless whether collected or areas. Older populations. However, limited availability many regions hinders the systematic incorporation into area design. Focusing on minimizing population decline maintaining connectivity between remain essential proxies

Язык: Английский

Процитировано

0
Emerging issues in fisheries science by fisheries scientists DOI Open Access
David Murray,

Victoria Campón‐Linares,

Carl M. O’Brien

и другие.

Journal of Fish Biology, Год журнала: 2024, Номер 105(2), С. 557 - 563

Опубликована: Апрель 16, 2024

The current epoch in fisheries science has been driven by continual advances laboratory techniques and increasingly sophisticated approaches to analysing datasets. We now have the scientific knowledge tools proactively identify obstacles sustainable management of marine resources. However, addition technological advances, there are predicted global environmental changes, each with inherent implications for fisheries. 2023 symposium Fisheries Society British Isles called "open constructive exchange between scientists, stakeholders, managers policymakers" (https://fsbi.org.uk/symposium-2023/), a nexus collaborative groups best placed issues solutions. Arguably, Centre Environment, Aquaculture Science (Cefas) their Scientific Advice Management (SAFM) Team sit at centre such network. SAFM regularly engages undertakes research, provides advice UK government, leading experts within International Council Exploration Sea (ICES). As such, this paper is an opinion piece, linked individual authors specialisms, that aims highlight emerging affecting suggest where research efforts could be focused contribute

Язык: Английский

Процитировано

2
Connecting the dots: Applying multispecies connectivity in marine park network planning DOI Creative Commons
Katie Gates, Jonathan Sandoval‐Castillo, Andrea Barceló

и другие.

Biological Conservation, Год журнала: 2024, Номер 298, С. 110759 - 110759

Опубликована: Авг. 23, 2024

Язык: Английский

Процитировано

2
Seascape genetic study on Laminaria digitata underscores the critical role of sampling schemes DOI
Louise Fouqueau, Lauric Reynes, Fernando Tempera

и другие.

Marine Ecology Progress Series, Год журнала: 2024, Номер 740, С. 23 - 42

Опубликована: Июнь 17, 2024

Understanding connectivity patterns exhibited by endangered species living in fragmented habitats is fundamental to improving management and conservation actions. Such improvements can be particularly pressing at the trailing edges of these habitats, where populations are facing greatest challenges from climate change, appear even more crucial if commercially harvested. Seascape genetics have been increasingly used meet needs. In this study, we examined among 32 oarweed kelp Lam inaria digitata located species’ southern range limit. The distance (or sampling gap) between neighboring ranged a few km 100s km. By genotyping 11 microsatellite markers, aimed (1) refine analyses population structure; (2) test whether on-shelf islands genetically differentiated than mainland populations; (3) evaluate relative importance various abiotic conditions shaping genetic (4) each environmental factor varied according schemes. Our revealed positive relationship links diversity: with high levels were enriched while isolated showed signs erosion. impoverished corresponded southernmost as well along northern coast Brittany (Locquirec, Saint-Malo Bay) northernmost Pas-de-Calais. performing distance-based redundancy analysis on schemes, geographic appeared dominant influencing separated great distances, hydrodynamic processes main when analyzing final spatial resolution.

Язык: Английский

Процитировано

1
A long-term ecological research data set from the marine genetic monitoring programme ARMS-MBON 2018-2020 DOI Creative Commons
Nauras Daraghmeh, Katrina Exter, Justine Pagnier

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Сен. 27, 2024

ABSTRACT Molecular methods such as DNA/eDNA metabarcoding have emerged useful tools to document biodiversity of complex communities over large spatio-temporal scales. We established an international Marine Biodiversity Observation Network (ARMS-MBON) combining standardised sampling using autonomous reef monitoring structures (ARMS) with for genetic marine hard-bottom benthic communities. Here, we present the data our first campaign comprising 56 ARMS units deployed in 2018-2019 and retrieved 2018-2020 across 15 observatories along coasts Europe adjacent regions. describe open-access set (image, genetic, metadata) explore show its potential ecological research. Our analysis shows that recovered more than 60 eukaryotic phyla capturing diversity up ∼5,500 amplicon sequence variants ∼1,800 operational taxonomic units, ∼250 ∼50 species per observatory cytochrome c oxidase subunit I (COI) 18S rRNA marker genes, respectively. Further, detected threatened, vulnerable non-indigenous often targeted biological monitoring. while deployment duration does not drive estimates, effort sequencing depth do. recommend should be at least three six months during main growth season use resources efficiently possible post-sequencing curation is applied enable statistical comparison entities. suggest used programmes long-term research encourage adoption ARMS-MBON protocols.

Язык: Английский

Процитировано

1