The
recurrence
of
similar
evolutionary
patterns
within
different
habitats
often
reflects
parallel
selective
pressures
acting
upon
either
standing
or
independently
occurring
genetic
variation
to
produce
a
convergence
phenotypes.
This
interpretation
(i.e.
divergences
adjacent
streams)
has
been
hypothesized
for
drainage-specific
morphological
‘ecotypes’
observed
in
polyploid
snowtrout
(Cyprinidae:
Schizothorax).
However,
differential
introgression
during
secondary
contact
is
viable
alternative
hypothesis.
Here,
we
utilized
ddRADseq
(N=35,319
de-novo
and
N=10,884
transcriptome-aligned
SNPs),
as
derived
from
Nepali/Bhutanese
samples
(N=48
each),
test
these
competing
hypotheses.
We
first
employed
genome-wide
allelic
depths
derive
appropriate
ploidy
models,
then
Bayesian
approach
yield
genotypes
statistically
consistent
under
the
inferred
expectations.
Elevational
were
geometric-morphometric
space,
but
with
phylogenetic
relationships
at
drainage-level,
sustaining
an
hypothesis
independent
emergence.
partitioned
analyses
phylogeny
admixture
identified
subsets
loci
selection
that
retained
genealogical
concordance
morphology,
suggesting
instead
apparent
morphological/phylogenetic
discordance
are
driven
by
widespread
genomic
homogenization.
effectively
‘masks’
previous
isolation.
Our
results
underscore
two
salient
factors:1)
Morphological
adaptations
despite
hybridization;
2)
degree
varies
across
tributaries,
presumably
concomitant
underlying
environmental
anthropogenic
factors.
PLoS ONE,
Год журнала:
2025,
Номер
20(2), С. e0315620 - e0315620
Опубликована: Фев. 5, 2025
Impoundment
construction
has
resulted
in
the
alternation
and
loss
of
fluvial
habitats,
threatening
persistence
many
native
fishes.
Compounding
this
threat,
non-native
species
stocked
into
impoundments
often
invade
interconnected
where
they
may
negatively
affect
species.
Black
basses
(genus
Micropteru
s)
are
popular
sportfishes
with
divergent
ecologies:
some
taxa
tolerant
widely
to
create
fishing
opportunities,
whereas
others
endemic
specialists
that
threatened
by
introgression
congeneric
taxa.
We
investigated
whether
facilitate
invasion
two
case
study
systems:
Lake
Lanier,
Georgia,
Tenkiller,
Oklahoma.
In
both
studies,
inhabited
upstream
tributaries
a
was
established
within
downstream
impoundment.
Results
from
longitudinal
surveys
provided
clear
evidence
non-natives
invaded
impoundments,
cases,
extensive
also
occurred.
Variation
spatial
trends
directionalities
across
studies
insights
eco-evolutionary
drivers.
Within
riverscapes
studied,
proximity
impoundment
appeared
influence
dynamics,
one
case,
stream
size
influential.
Introgression
rates
varied
markedly
pairs
studied–from
very
little
onset
hybrid
swarming–illustrating
importance
underlying
mechanisms
such
as
habitat
alteration,
propagule
pressure,
reproductive
isolation.
Our
results
underscore
need
consider
influences
them,
more
holistic
riverscape
conservation
plans
for
fishes,
including
black
basses.
North American Journal of Fisheries Management,
Год журнала:
2025,
Номер
unknown
Опубликована: Май 20, 2025
ABSTRACT
Objective
Loss
of
biodiversity
is
a
critical
factor
affecting
ecosystem
health.
Yet,
evaluating
the
presence
and
abundance
species
can
be
hampered
by
ability
to
identify
similar
co-occurring
species.
Although
molecular
approaches
are
being
increasingly
used
species,
quantifying
simplest
when
biologists
specimens
visually.
The
taxonomy
sucker
Pantosteus
western
North
America
has
recently
been
revised
based
on
phylogenetics
but
without
verified
means
identifying
they
captured
in
wild.
In
this
study,
we
pair
morphological
data
distinguishing
characteristics
between
Bluehead
Suckers
discobolus,
Green
P.
virescens,
Mountain
platyrhynchus.
Methods
We
collected
genetic
samples
populations
from
across
their
range
Snake
River,
Bonneville
Basin,
Colorado
River
United
States.
generated
mitochondrial
nuclear
DNA
sequence
paired
it
with
measurements
fish
digital
photographs
live
specimens.
Results
Mitochondrial
separated
Snake/Bonneville
watersheds
did
not
separate
watershed.
Nuclear
all
three
watersheds.
Differences
body
depth,
head
size,
fin
length,
scales
lateral
line
were
variables
that
distinguished
develop
discriminant
function
predict
membership
high
accuracy.
Conclusions
Molecular
fishes
may
otherwise
go
unrecognized.
When
meristic
data,
inform
how
closely
related
suckers
offer
cost-effective
method
developing
monitoring
programs.
Evolutionary Applications,
Год журнала:
2020,
Номер
13(6), С. 1400 - 1419
Опубликована: Июнь 15, 2020
Admixture
in
natural
populations
is
a
long-standing
management
challenge,
with
population
genomic
approaches
offering
means
for
adjudication.
We
now
more
clearly
understand
the
permeability
of
species
boundaries
and
potential
admixture
promoting
adaptive
evolution.
These
issues
particularly
resonate
western
North
America,
where
tectonism
aridity
have
fragmented
reshuffled
rivers
over
millennia,
turn
reticulation
among
endemic
fishes,
situation
compounded
by
anthropogenic
habitat
modifications
non-native
introductions.
The
melding
historic
contemporary
has
both
confused
stymied
management.
underscore
this
case
study
that
quantifies
basin-wide
group
native
introduced
fishes
employing
double-digest
restriction
site-associated
DNA
(ddRAD)
sequencing.
Our
approach:
(a)
admixed
history
343
suckers
(10
Catostomidae)
across
Colorado
River
Basin;
(b)
gauges
within
context
phylogenetic
distance
"ecological
specialization";
(c)
extrapolates
drivers
introgression
hybrid
crosses
involve
as
well
invasive
species.
extends
an
entire
freshwater
basin
expands
previous
studies
limited
scope
geographically
taxonomically.
results
detected
involving
all
10
species,
alterations
not
only
accelerating
breakdown
reproductive
isolation,
but
also
introgression.
Hybridization
occurred
genus
despite
distance,
whereas
was
subgenera,
implicating
and/or
ecological
specialization
isolation.
Understanding
extent
isolation
multiple
serves
to
disentangle
their
reticulate
evolutionary
histories
provides
broadscale
perspective
conservation
Ecology and Evolution,
Год журнала:
2020,
Номер
10(19), С. 10798 - 10817
Опубликована: Сен. 1, 2020
Abstract
The
tips
in
the
tree
of
life
serve
as
foci
for
conservation
and
management,
yet
clear
delimitations
are
masked
by
inherent
variance
at
species–population
interface.
Analyses
using
thousands
nuclear
loci
can
potentially
sort
inconsistencies,
standard
categories
applied
to
this
parsing
themselves
conflicting
and/or
subjective
[e.g.,
DPS
(distinct
population
segments);
DUs
(Diagnosable
Units‐Canada);
MUs
(management
units);
SSP
(subspecies);
ESUs
(Evolutionarily
Significant
Units);
UIEUs
(uniquely
identified
evolutionary
units)].
One
potential
solution
consistent
categorization
is
create
a
comparative
framework
accumulating
statistical
results
from
independent
studies
evaluating
congruence
among
data
sets.
Our
study
illustrates
approach
speckled
dace
(Leuciscidae:
Rhinichthys
osculus
)
endemic
two
basins
(Owens
Amargosa)
Death
Valley
ecosystem.
These
fish
persist
Mojave
Desert
isolated
Plio‐Pleistocene
relicts
concern,
but
lack
formal
taxonomic
descriptions/designations.
Double
digest
RAD
(ddRAD)
methods
14,355
SNP
across
10
populations
(
N
=
140).
Species
delimitation
analyses
[multispecies
coalescent
(MSC)
unsupervised
machine
learning
(UML)]
delineated
four
putative
ESUs.
F
ST
outlier
106)
were
juxtaposed
uncover
localized
adaptations.
We
detected
one
hybrid
that
resulted
upstream
reconnection
habitat
following
contemporary
pluvial
periods,
whereas
remaining
represent
relics
ancient
tectonism
within
geographically
springs
groundwater‐fed
streams.
offers
three
salient
conclusions:
blueprint
multifaceted
units;
proposed
mechanism
which
criteria
intraspecific
biodiversity
be
standardized;
strong
argument
proactive
management
critically
endangered
ecosystem
fishes.
Proceedings of the Royal Society B Biological Sciences,
Год журнала:
2023,
Номер
290(1999)
Опубликована: Май 16, 2023
Hybridization
is
a
complicated,
oft-misunderstood
process.
Once
deemed
unnatural
and
uncommon,
hybridization
now
recognized
as
ubiquitous
among
species.
But
rates
within
communities
are
poorly
understood
despite
the
relevance
to
ecology,
evolution
conservation.
To
clarify,
we
examined
across
75
freshwater
fish
Ozarks
of
North
American
Interior
Highlands
(USA)
by
single
nucleotide
polymorphism
(SNP)
genotyping
33
species
(
Biological reviews/Biological reviews of the Cambridge Philosophical Society,
Год журнала:
2024,
Номер
unknown
Опубликована: Авг. 2, 2024
ABSTRACT
Chemical
pollutants
and/or
climate
change
have
the
potential
to
break
down
reproductive
barriers
between
species
and
facilitate
hybridization.
Hybrid
zones
may
arise
in
response
environmental
gradients
secondary
contact
formerly
allopatric
populations,
or
due
introduction
of
non‐native
species.
In
freshwater
ecosystems,
field
observations
indicate
that
changes
water
quality
chemistry,
pollution
change,
are
correlated
with
an
increased
frequency
Physical
chemical
disturbances
can
alter
sensory
environment,
thereby
affecting
visual
communication
among
fish.
Moreover,
multiple
compounds
(e.g.
pharmaceuticals,
metals,
pesticides,
industrial
contaminants)
impair
fish
physiology,
potentially
phenotypic
traits
relevant
for
mate
selection
pheromone
production,
courtship,
coloration).
Although
warming
waters
led
documented
range
shifts,
is
ubiquitous
few
studies
tested
hypotheses
about
how
these
stressors
hybridization
what
this
means
biodiversity
conservation.
Through
a
systematic
literature
review
across
disciplines
(i.e.
ecotoxicology
evolutionary
biology),
we
evaluate
biological
interactions,
toxic
mechanisms,
roles
physical
change)
disrupting
preferences
inducing
interspecific
Our
study
indicates
change‐driven
impact
crucial
choice
thus
could
fishes
ecosystems.
To
inform
future
conservation
management,
emphasize
importance
further
research
identify
choice,
understand
mechanisms
behind
determine
concentrations
at
which
they
occur,
assess
their
on
individuals,
species,
diversity
Anthropocene.
PLoS ONE,
Год журнала:
2023,
Номер
18(10), С. e0289736 - e0289736
Опубликована: Окт. 24, 2023
Global
biodiversity
hotspots
are
often
remote,
tectonically
active
areas
undergoing
climatic
fluctuations,
such
as
the
Himalaya
Mountains
and
neighboring
Qinghai-Tibetan
Plateau
(QTP).
They
provide
biogeographic
templates
upon
which
endemic
can
be
mapped
to
infer
diversification
scenarios.
Yet,
this
process
somewhat
opaque
for
Himalaya,
given
substantial
data
gaps
separating
eastern
western
regions.
To
help
clarify,
we
evaluated
phylogeographic
phylogenetic
hypotheses
a
widespread
fish
(Snowtrout:
Cyprininae;
Schizothorax)
by
sequencing
1,140
base
pair
of
mtDNA
cytochrome-b
(cytb)
from
Central
samples
(Nepal:
N
=
53;
Bhutan:
19),
augmented
with
68
GenBank
sequences
(N
60
Schizothorax/N
8
outgroups).
Genealogical
relationships
132)
were
analyzed
via
maximum
likelihood
(ML),
Bayesian
(BA),
haplotype
network
clustering,
clade
divergence
estimated
TimeTree.
Snowtrout
seemingly
originated
in
Asia,
dispersed
across
QTP,
then
into
Bhutan
southward-flowing
tributaries
east-flowing
Yarlung-Tsangpo
River
(YLTR).
Headwaters
five
large
Asian
rivers
provided
dispersal
corridors
eastern/southeastern
Asia.
South
YLTR
transitions
Brahmaputra
River,
facilitating
successive
westward
colonization
Himalayan
drainages
first
Bhutan,
Nepal,
followed
far-western
subsequently
captured
(now)
westward-flowing
Indus
River.
Two
distinct
Bhutanese
groups
recovered:
Bhutan-1
(with
three
subclades)
represents
southward
QTP;
Bhutan-2
apparently
illustrates
northward
Lower
Brahmaputra.
The
close
phylogenetic/phylogeographic
between
(Pakistan)
Upper
Ganges
(India/Nepal)
potentially
implicate
an
historic,
now
disjunct
connection.
Greater
species-divergences
occurred
rather
than
within-basins,
suggesting
vicariance
driver.
is
component
Earth's
largest
glacial
reservoir
(i.e.,
"third-pole")
separate
Arctic/Antarctic.
Its
unique
aquatic
must
defined
conserved
through
broad,
trans-national
collaborations.
Our
study
provides
initial
baseline
process.