Molecular Ecology,
Год журнала:
2024,
Номер
33(15)
Опубликована: Июль 12, 2024
Abstract
Hybridization
between
divergent
lineages
can
result
in
losses
of
distinct
evolutionary
taxa.
Alternatively,
hybridization
lead
to
increased
genetic
variability
that
may
fuel
local
adaptation
and
the
generation
novel
traits
and/or
Here,
we
examined
single‐nucleotide
polymorphisms
generated
using
genotyping‐by‐sequencing
a
population
Dolly
Varden
char
(Pisces:
Salmonidae)
is
highly
admixed
within
contact
zone
two
subspecies
(
Salvelinus
malma
,
Northern
[NDV]
S.
m.
lordi
Southern
[SDV])
southwestern
Alaska
assess
spatial
distribution
hybrids
test
hypotheses
on
origin
population.
Ancestry
analysis
revealed
this
composed
advanced
NDV
SDV
or
backcrosses
SDV;
no
F
1
were
detected.
Coalescent‐based
demographic
modelling
supported
about
55,000
years
ago
by
secondary
with
low
levels
contemporary
gene
flow.
varies
watershed
ancestry
was
positively
associated
distance
upstream
from
sea,
contingent
habitat‐type
sampled,
negatively
number
migrations
individual
fish
made
sea.
Our
results
suggest
divergence
over
hundreds
thousands
not
be
significant
reproductive
isolation,
but
elevated
diversity
owing
have
contributed
adaptive
habitat
use
life
history.
Journal of Evolutionary Biology,
Год журнала:
2022,
Номер
35(9), С. 1143 - 1164
Опубликована: Сен. 1, 2022
Abstract
Reproductive
isolation
(RI)
is
a
core
concept
in
evolutionary
biology.
It
has
been
the
central
focus
of
speciation
research
since
modern
synthesis
and
basis
by
which
biological
species
are
defined.
Despite
this,
term
used
seemingly
different
ways,
attempts
to
quantify
RI
have
very
approaches.
After
showing
that
field
lacks
clear
definition
term,
we
attempt
clarify
key
issues,
including
what
is,
how
it
can
be
quantified
principle,
measured
practice.
Following
other
definitions
with
genetic
focus,
propose
quantitative
measure
effect
differences
between
populations
on
gene
flow.
Specifically,
compares
flow
neutral
alleles
presence
these
without
any
such
differences.
thus
greater
than
zero
when
reduce
populations.
We
show
range
scenarios.
A
conclusion
depends
strongly
circumstances—including
spatial,
temporal
genomic
context—making
difficult
compare
across
systems.
reviewing
methods
for
estimating
from
data,
conclude
discuss
our
findings
light
goals
encourage
use
integrate
organismal
biology
ways
efforts
data
vastly
In
this
paper,
issues
about
RI,
Proceedings of the National Academy of Sciences,
Год журнала:
2023,
Номер
120(40)
Опубликована: Сен. 25, 2023
Delimiting
and
naming
biodiversity
is
a
vital
step
toward
wildlife
conservation
research.
However,
species
delimitation
must
be
consistent
across
biota
so
that
the
limited
resources
available
for
nature
protection
can
spent
effectively
objectively.
To
date,
newly
discovered
lineages
typically
are
either
left
undescribed
thus
remain
unprotected
or
being
erroneously
proposed
as
new
despite
mixed
evidence
completed
speciation,
in
turn
contributing
to
emerging
problem
of
taxonomic
inflation.
Inspired
by
recent
conceptual
methodological
progress,
we
propose
standardized
workflow
combines
phylogenetic
hybrid
zone
analyses
genomic
datasets
(“genomic
taxonomy”),
which
phylogeographic
do
not
freely
admix
ranked
species,
while
those
have
remained
fully
genetically
compatible
subspecies.
In
both
cases,
encourage
their
formal
naming,
diagnosis,
description
promote
social
awareness
biodiversity.
The
use
loci
throughout
genome
overcomes
unreliability
widely
used
barcoding
genes
when
patterns
complex,
evaluation
divergence
reproductive
isolation
unifies
long-opposed
concepts
lineage
biological
species.
We
suggest
shift
assessments
from
single
level
(species)
two-level
hierarchy
(species
subspecies)
will
lead
more
balanced
perception
intraspecific
interspecific
diversity
valued
adequately
protected.
Journal of Biogeography,
Год журнала:
2024,
Номер
51(9), С. 1709 - 1722
Опубликована: Фев. 13, 2024
Abstract
An
accurate
species‐level
taxonomy
is
paramount
for
biogeographical
research,
and
conversely,
data
are
of
importance
species
delimitation.
We
here
review
recent
developments
future
perspectives
direct
relevance
biogeographers.
The
understanding
that
independently
evolving
segments
population‐level
lineages,
the
rise
integrative
approaches
to
delimit
such
advent
high‐throughput
sequencing
have
considerably
renewed
discipline
taxonomy.
Using
genome‐scale
molecular
datasets,
extent
admixture
across
hybrid
zones
can
now
be
effectively
assessed
evolutionary
independence
lineages
inferred,
leading
more
reliable
comparable
delimitation
criteria.
Substantially
divergent
but
admixing
phylogeographical
conveniently
named
as
subspecies,
thus
avoiding
taxonomic
oversplitting
inflation.
At
same
time,
comprehensive
DNA
barcoding
metabarcoding
efforts
uncovering
an
enormous
proportion
undiscovered
biotic
diversity,
we
encourage
development
bioinformatic
pipelines
combine
discovery
with
diagnosis
scientific
naming,
approach
a
inventory
globe
without
abandoning
established
Linnaean
system.
Cold Spring Harbor Perspectives in Biology,
Год журнала:
2024,
Номер
16(12), С. a041445 - a041445
Опубликована: Март 4, 2024
Joshua
V.
Peñalba1,
Anna
Runemark2,
Joana
I.
Meier3,4,
Pooja
Singh5,6,
Guinevere
O.U.
Wogan7,
Rosa
Sánchez-Guillén8,
James
Mallet9,
Sina
J.
Rometsch10,11,
Mitra
Menon12,
Ole
Seehausen5,6,
Jonna
Kulmuni13,14,16
and
Ricardo
Pereira15,16
1Museum
für
Naturkunde,
Leibniz
Institute
for
Evolution
Biodiversity
Science,
Center
Integrative
Discovery,
10115
Berlin,
Germany
2Department
of
Biology,
Lund
University,
22632
Lund,
Sweden
3Tree
Life,
Wellcome
Sanger
Institute,
Hinxton,
Cambridgeshire
CB10
1SA,
United
Kingdom
4Department
Zoology,
University
Cambridge,
CB2
3EJ,
5Department
Aquatic
Ecology,
Ecology
Evolution,
Bern,
3012
Switzerland
6Center
&
Biogeochemistry,
Swiss
Federal
Science
Technology
(EAWAG),
CH-8600
Kastanienbaum,
7Department
Oklahoma
State
Stillwater,
74078,
USA
8Red
de
Biología
Evolutiva,
INECOL,
Xalapa,
Veracruz,
CP
91073,
Mexico
9Organismal
Evolutionary
Harvard
Massachusetts
02138,
10Department
Yale
New
Haven,
Connecticut
06511,
11Yale
Biospheric
Studies,
12Department
California
Davis,
95616,
13Department
Population
Ecosystem
Dynamics,
Amsterdam,
1098
XH
The
Netherlands
14Organismal
Biology
Research
Programme,
Helsinki,
Biocenter
3,
Finland
15Department
Museum
Natural
History
Stuttgart,
Stuttgart
70191,
Correspondence:
ricardojn.pereira{at}gmail.com
↵16
These
authors
contributed
equally
to
this
work.
Evolution,
Год журнала:
2022,
Номер
76(10), С. 2228 - 2243
Опубликована: Июль 15, 2022
Speciation
is
driven
by
the
evolution
of
reproductive
isolating
barriers
that
reduce,
and
ultimately
prevent,
substantial
gene
flow
between
lineages.
Despite
its
central
role
in
evolutionary
biology,
process
can
be
difficult
to
study
because
it
proceeds
differently
among
groups
may
occur
over
long
timescales.
Due
this
complexity,
we
typically
rely
on
generalizations
empirical
data
describe
understand
process.
Previous
reviews
isolation
(RI)
flowering
plants
have
suggested
prezygotic
or
extrinsic
generally
a
stronger
effect
reducing
compared
postzygotic
intrinsic
barriers.
Past
conclusions
rested
relatively
few
estimates
RI;
however,
RI
become
increasingly
abundant
past
15
years.
We
analyzed
from
recent
studies
quantifying
multiple
pre-
postmating
strengths
across
89
taxa
pairs
using
standardized
metrics.
Individual
were
average
than
individual
barriers,
total
strength
was
approximately
twice
RI.
These
findings
corroborate
ecological
divergence
factors,
as
opposed
solely
accumulation
genetic
incompatibilities,
are
important
speciation
maintenance
species
boundaries
plants.
an
emphasis
literature
asymmetric
RI,
found
acted
equally
asymmetrically.
Overall,
variability
12
highlights
great
diversity
mechanisms
contribute
plant
diversification.
Cold Spring Harbor Perspectives in Biology,
Год журнала:
2024,
Номер
16(8), С. a041432 - a041432
Опубликована: Янв. 8, 2024
Erik
B.
Dopman1,
Kerry
L.
Shaw2,
Maria
R.
Servedio3,
Roger
K.
Butlin4,5
and
Carole
M.
Smadja6
1Department
of
Biology,
Tufts
University,
Medford,
Massachusetts
02155,
USA
2Department
Neurobiology
Behavior,
Cornell
Ithaca,
New
York
14853,
3Department
University
North
Carolina,
Chapel
Hill,
Carolina
27599,
4Ecology
Evolutionary
School
Biosciences,
The
Sheffield,
Western
Bank,
Sheffield
S10
2TN,
United
Kingdom
5Department
Marine
Sciences,
Gothenburg,
Gothenburg
40530,
Sweden
6Institut
des
Sciences
de
l'Evolution
Montpellier
ISEM,
Universite
Montpellier,
CNRS,
IRD,
34095,
France
Correspondence:
erik.dopman{at}tufts.edu
Zoological Journal of the Linnean Society,
Год журнала:
2021,
Номер
195(3), С. 695 - 760
Опубликована: Сен. 8, 2021
Abstract
Biodiversity
analyses
can
greatly
benefit
from
coherent
species
delimitation
schemes
and
up-to-date
distribution
data.
In
this
article,
we
have
made
the
daring
attempt
to
delimit
map
described
undescribed
lineages
of
anuran
amphibians
in
Eastern
Palaearctic
(EP)
region
its
broad
sense.
Through
a
literature
review,
evaluated
status
considering
reproductive
isolation
genetic
divergence,
combined
with
an
extensive
occurrence
dataset
(nearly
85k
localities).
Altogether
274
native
46
genera
ten
families
were
retrieved,
plus
eight
additional
introduced
other
realms.
Independent
hotspots
richness
concentrated
southern
Tibet
(Medog
County),
circum-Sichuan
Basin
region,
Taiwan,
Korean
Peninsula
main
Japanese
islands.
Phylogeographic
breaks
responsible
for
recent
situ
speciation
events
shared
around
Sichuan
Mountains,
across
Honshu
between
Ryukyu
Island
groups,
but
not
shallow
water
bodies
like
Yellow
Sea
Taiwan
Strait.
Anuran
compositions
suggested
restrict
zoogeographical
limits
EP
East
Asia.
rapidly
evolving
field,
our
study
provides
checkpoint
appreciate
patterns
diversity
under
single,
spatially
explicit,
framework
that
integrates
phylogeographic
data
taxonomic
research.
Molecular Ecology,
Год журнала:
2023,
Номер
32(8), С. 2041 - 2054
Опубликована: Янв. 18, 2023
Abstract
Understanding
the
phenotypic
and
genetic
architecture
of
reproductive
isolation
is
a
long‐standing
goal
speciation
research.
In
several
systems,
large‐effect
loci
contributing
to
barrier
phenotypes
have
been
characterized,
but
such
causal
connections
are
rarely
known
for
more
complex
architectures.
this
study,
we
combine
“top‐down”
“bottom‐up”
approaches
with
demographic
modelling
toward
an
integrated
understanding
across
monkeyflower
hybrid
zone.
Previous
work
suggests
that
pollinator
visitation
acts
as
primary
gene
flow
between
two
divergent
red‐
yellow‐flowered
ecotypes
Mimulus
aurantiacus
.
Several
candidate
isolating
traits
anonymous
single
nucleotide
polymorphism
under
selection
identified,
their
genomic
positions
remain
unknown.
Here,
report
findings
from
analyses
indicate
zone
formed
by
secondary
contact,
subsequent
was
restricted
widespread
genome.
Using
novel,
geographic
cline‐based
genome
scan,
demonstrate
broadly
distributed
genome,
rather
than
mapping
one
or
few
“islands
speciation.”
Quantitative
trait
locus
(QTL)
reveals
most
floral
highly
polygenic,
little
evidence
QTL
colocalize,
indicating
genetically
independent.
Finally,
find
overlap,
suggesting
some
contribute
other
forms
isolation.
Our
highlight
challenges
reveal
barriers
may
play
important
role
in
system.
Trends in Genetics,
Год журнала:
2024,
Номер
40(4), С. 337 - 351
Опубликована: Фев. 22, 2024
Speciation
is
a
key
evolutionary
process
that
not
yet
fully
understood.
Combining
population
genomic
and
ecological
data
from
multiple
diverging
pairs
of
marine
snails
(Littorina)
supports
the
search
for
speciation
mechanisms.
Placing
on
one-dimensional
continuum,
undifferentiated
populations
to
species,
obscured
complexity
speciation.
Adding
axes
helped
describe
either
routes
or
reproductive
isolation
in
snails.
Divergent
selection
repeatedly
generated
barriers
between
ecotypes,
but
appeared
less
important
completing
while
genetic
incompatibilities
played
role.
Chromosomal
inversions
contributed
barriers,
with
variable
impact.
A
multidimensional
(hypercube)
approach
supported
framing
questions
identification
knowledge
gaps
can
be
useful
understand
many
other
systems.