Systematic Biology,
Год журнала:
2015,
Номер
65(3), С. 449 - 464
Опубликована: Дек. 17, 2015
The
molecular
clock
hypothesis
is
fundamental
in
evolutionary
biology
as
by
assuming
constancy
of
the
rate
it
provides
a
timeframe
for
evolution.
However,
increasing
evidence
shows
time
dependence
inferred
rates
with
inflated
values
obtained
using
recent
calibrations.
As
demographic
calibrations
are
virtually
non-existent
most
species,
older
phylogenetic
calibration
points
(>1
Ma)
commonly
used,
which
overestimate
parameters.
To
obtain
more
reliable
evolution
population
studies,
I
propose
transition
(CDT)
method,
uses
timing
climatic
changes
over
late
glacial
warming
period
to
calibrate
expansions
various
species.
Simulation
approaches
and
empirical
data
sets
from
diversity
species
(from
mollusk
humans)
confirm
that,
when
compared
other
genealogy-based
methods,
CDT
robust
broadly
applicable
genetics.
resulting
also
heterogeneity
among
taxa.
Comparisons
expansion
dates
ecological
inaccuracy
phylogenetically
derived
divergence
dating
population-level
events.
method
opens
opportunities
addressing
issues
such
responses
past
climate
change
origin
related
taxa,
genes,
time,
genetic
information
content.
Journal of Biogeography,
Год журнала:
2015,
Номер
43(1), С. 13 - 30
Опубликована: Окт. 19, 2015
Abstract
Aim
The
geological
and
palaeo‐climatic
forces
that
produced
the
unique
biodiversity
in
Red
Sea
are
a
subject
of
vigorous
debate.
Here,
we
review
evidence
for
against
hypotheses
that:
(1)
fauna
was
extirpated
during
glacial
cycles
Pleistocene
(2)
coral
reef
found
refuge
within
or
just
outside
low
sea
level
stands
when
conditions
were
inhospitable.
Location
Western
Indian
Ocean.
Methods
We
literature
on
palaeontological,
geological,
biological
genetic
allow
us
to
explore
competing
origins
maintenance
shallow‐water
Sea.
Results
Palaeontological
(microfossil)
indicates
some
areas
central
devoid
most
plankton
due
hypersaline
caused
by
almost
complete
isolation
from
However,
two
may
have
retained
adequate
survival:
Gulf
Aqaba
southern
In
addition
Sea,
which
separated
northern
faunas,
strong
barrier
also
operate
region:
cold,
nutrient‐rich
water
upwelling
at
boundary
Aden
Arabian
Biological
data
either
inconclusive
support
these
putative
barriers
refugia,
but
no
set,
know
rejects
them.
Genetic
suggests
many
endemic
lineages
diverged
their
Ocean
counterparts
long
before
recent
glaciations
and/or
restricted
narrow
areas,
especially
Main
conclusions
High
endemism
observed
appears
multiple
origins.
A
separates
rest
whereas
strait
Aden,
each
providing
potential
isolating
barriers.
Additional
arise
environmental
gradients,
circulation
patterns
constriction
mouth
Aqaba.
Endemics
evolved
basin
had
survive
relatively
salinity
refugia.
It
therefore
those
characteristics
Peninsula
region
as
whole,
drive
divergence
populations
via
combination
selection.
National Science Review,
Год журнала:
2018,
Номер
6(2), С. 275 - 288
Опубликована: Июль 22, 2018
Allopatric
speciation
requiring
an
unbroken
period
of
geographical
isolation
has
been
the
standard
model
neo-Darwinism.
While
doubts
have
repeatedly
raised,
strict
allopatry
without
any
gene
flow
remains
a
plausible
mechanism
in
most
cases.
To
rigorously
reject
allopatry,
genomic
sequences
superimposed
on
geological
records
well-delineated
barrier
are
necessary.
The
Strait
Malacca,
narrowly
connecting
Pacific
and
Indian
Ocean
coasts,
serves
at
different
times
either
as
or
conduit
for
coastal/marine
species.
We
surveyed
1700
plants
from
29
populations
5
common
mangrove
species
by
large-scale
DNA
sequencing
added
several
whole-genome
assemblies.
Speciation
between
two
oceans
is
driven
cycles
due
to
fluctuations
sea
level
leading
opening/closing
ocean
currents.
Because
time
required
mangroves
longer
than
phases,
these
proceeded
through
many
mixing-isolation-mixing,
MIM,
cycles.
MIM
mechanism,
relaxing
condition
no
flow,
can
promote
more
features
can.
Finally,
also
efficient,
potentially
yielding
mn
(m
>
1)
ather
n
cycles.Mechanisms
formation
always
conundrum.
that
fully
geographically
isolated,
allopatric
speciation,
solution
last
50
years.
Complete
with
possibility
however,
often
untenable
inefficient
generating
enormous
biodiversity.
By
studying
Indo-Malayan
global
hotspot
coastal
biodiversity,
we
were
able
combine
data
Indo-Pacific
Barrier
separates
coasts.
discovered
novel
call
mixingisolation-mixing
(MIM)
permitting
intermittent
during
speciation,MIMcycles
generate
exponential
rate,
thus
combining
biodiversity
unified
framework.
Abstract
Sea-level
change
is
an
important
parameter
controlling
the
expansion
of
oxygen-depleted
conditions
in
neritic
settings
during
oceanic
anoxic
events
(OAEs).
Despite
this
fundamental
role,
it
remains
on
a
short
timescale
(<1
Myr)
one
least
constrained
parameters
for
numerous
OAEs.
Here
we
present
sedimentological
and
geochemical
evidence
from
Morocco
East
Greenland
showing
that
forced
regression
shortly
precedes
(ca.10
2
kyr)
major
transgression
associated
with
Toarcian
OAE.
The
can
be
correlated
over
distances
greater
than
3000
km
Tethyan
Boreal
basins,
indicating
relative
sea-level
was
driven
by
eustastic
fluctuations.
amplitude
(>50
m)
duration
suggests
most
likely
related
to
transient
waxing
waning
polar
ice
sheet.
We
suggest
short-lived
glaciation
might
have
genetic
link
inception
Indeed,
deglaciation
accompanying
rise,
thawing
permafrost
may
released
quantities
methane
into
atmosphere
would
contributed
OAE
rapid
warming
its
characteristic
negative
carbon
isotope
excursion.
This
study
offers
hypothesis
how
some
hyperthermal
rooted
“cold-snap”
episodes.
Global Ecology and Biogeography,
Год журнала:
2019,
Номер
28(7), С. 943 - 960
Опубликована: Апрель 22, 2019
Abstract
Aim
To
test
hypothesized
biogeographic
partitions
of
the
tropical
Indo‐Pacific
Ocean
with
phylogeographic
data
from
56
taxa,
and
to
evaluate
strength
nature
barriers
emerging
this
test.
Location
The
Ocean.
Time
period
Pliocene
through
Holocene.
Major
taxa
studied
Fifty‐six
marine
species.
Methods
We
tested
eight
hypotheses
for
partitioning
using
a
novel
modification
analysis
molecular
variance.
Putative
gene
flow
were
evaluated
pairwise
Φ
ST
,
these
distributions
compared
randomized
datasets
simple
coalescent
simulations
vicariance
arising
Last
Glacial
Maximum.
then
weighed
relative
contribution
distance
versus
environmental
or
geographic
distance‐based
redundancy
(dbRDA).
Results
observed
diversity
outcomes,
although
majority
species
fit
few
broad
regions.
Repeated
simulation
model
yielded
wide
distribution
that
was
very
similar
empirical
across
five
putative
flow.
Three
had
median
significantly
larger
than
random
expectation.
Only
21
52
analysed
dbRDA
rejected
null
model.
Among
these,
15
overwater
as
significant
predictor
while
11
other
distance.
Main
conclusions
Although
there
is
support
three
previously
described
barriers,
discordance
in
indicates
incongruity
between
processes
shaping
at
population
levels.
many
possible
causes
incongruity,
genetic
drift
provides
most
compelling
explanation:
given
massive
effective
sizes
species,
even
hard
tens
thousands
years
can
yield
values
range
0
nearly
0.5.
Proceedings of the Royal Society B Biological Sciences,
Год журнала:
2019,
Номер
286(1908), С. 20190745 - 20190745
Опубликована: Июль 31, 2019
Functional
diversity
is
an
important
aspect
of
biodiversity,
but
its
relationship
to
species
in
time
and
space
poorly
understood.
Here
we
compare
spatial
patterns
functional
taxonomic
across
marine
terrestrial
systems
identify
commonalities
their
respective
ecological
evolutionary
drivers.
We
placed
species-level
traits
into
comparable
multi-dimensional
frameworks
for
two
model
systems,
bivalves
birds,
used
global
species-occurrence
data
examine
the
distribution
with
latitude
longitude.
In
both
tropical
faunas
show
high
total
richness
(FR)
low
evenness
(FE)
(i.e.
tropics
contain
a
highly
skewed
among
groups).
groups
that
persist
toward
poles
become
more
uniform
richness,
such
FR
declines
FE
rises
systems.
Temperate
assemblages
are
functionally
even
than
subsampled
temperate
levels
suggesting
reflects
degree
specialization
within
few
and/or
factors
favour
recent
speciation
or
reduced
extinction
rates
those
groups.
Nature Communications,
Год журнала:
2021,
Номер
12(1)
Опубликована: Фев. 17, 2021
Seahorses
have
a
circum-global
distribution
in
tropical
to
temperate
coastal
waters.
Yet,
seahorses
show
many
adaptations
for
sedentary,
cryptic
lifestyle:
they
require
specific
habitats,
such
as
seagrass,
kelp
or
coral
reefs,
lack
pelvic
and
caudal
fins,
give
birth
directly
developed
offspring
without
pronounced
pelagic
larval
stage,
rendering
long-range
dispersal
by
conventional
means
inefficient.
Here
we
investigate
seahorses'
worldwide
biogeographic
patterns
based
on
de
novo
genome
assembly
of
Hippocampus
erectus
well
358
re-sequenced
genomes
from
21
species.
evolved
the
late
Oligocene
subsequent
colonization
routes
are
identified
linked
changing
dynamics
ocean
currents
paleo-temporal
seaway
openings.
Furthermore,
genetic
basis
recurring
"bony
spines"
adaptive
phenotype
is
independent
substitutions
key
developmental
gene.
Analyses
thus
suggest
that
rafting
via
compensates
poor
rapid
adaptation
facilitates
colonizing
new
habitats.