Genome-Wide Identification and Characterization of the Soybean Snf2 Gene Family and Expression Response to Rhizobia DOI Open Access
Jianhao Wang,

Zhihui Sun,

Huan Liu

и другие.

International Journal of Molecular Sciences, Год журнала: 2023, Номер 24(8), С. 7250 - 7250

Опубликована: Апрель 14, 2023

Sucrose nonfermenting 2 (Snf2) family proteins are the core component of chromatin remodeling complexes that can alter structure and nucleosome position by utilizing energy ATP, playing a vital role in transcription regulation, DNA replication, damage repair. Snf2 have been characterized various species including plants, they found to regulate development stress responses Arabidopsis. Soybean (Glycine max) is an important food economic crop worldwide, unlike other non-leguminous crops, soybeans form symbiotic relationship with rhizobia for biological nitrogen fixation. However, little known about soybean. In this study, we identified 66 genes soybean could be classified into six groups like Arabidopsis, unevenly distributed on 20 chromosomes. Phylogenetic analysis Arabidopsis revealed these divided 18 subfamilies. Collinear showed segmental duplication was main mechanism expansion rather than tandem repeats. Further evolutionary indicated duplicated gene pairs had undergone purifying selection. All contained seven domains, each protein at least one SNF2_N domain Helicase_C domain. Promoter most cis-elements associated jasmonic acid, abscisic nodule specificity their promoter regions. Microarray data real-time quantitative PCR (qPCR) expression profiles were detected both root tissues, some them significantly downregulated after rhizobial infection. conducted comprehensive demonstrated responsiveness Rhizobia This provides insight potential roles nodulation.

Язык: Английский

WRKY transcription factors in plant defense DOI Open Access
Talha Javed, San‐Ji Gao

Trends in Genetics, Год журнала: 2023, Номер 39(10), С. 787 - 801

Опубликована: Авг. 25, 2023

Язык: Английский

Процитировано

128
Epigenetics for Crop Improvement in Times of Global Change DOI Creative Commons
Ioanna Kakoulidou, Evangelia V. Avramidou, Miroslav Baránek

и другие.

Biology, Год журнала: 2021, Номер 10(8), С. 766 - 766

Опубликована: Авг. 11, 2021

Epigenetics has emerged as an important research field for crop improvement under the on-going climatic changes. Heritable epigenetic changes can arise independently of DNA sequence alterations and have been associated with altered gene expression transmitted phenotypic variation. By modulating plant development physiological responses to environmental conditions, diversity—naturally, genetically, chemically, or environmentally induced—can help optimise traits in era challenged by global climate change. Beyond variation, modifications may contribute breeding providing useful markers allowing use epigenome diversity predict performance increase final production. Given difficulties transferring knowledge mechanisms from model plants crops, various strategies emerged. Among those are modelling frameworks dedicated predicting epigenetically controlled-adaptive traits, epigenetics vitro regeneration accelerate breeding, specific marks that modulate interest. The key challenge agriculture faces 21st century is production speeding up resilient species. Therefore, provides fundamental molecular information potential direct applications enhancement, tolerance, adaptation within context

Язык: Английский

Процитировано

95
Plant abiotic stress: New insights into the factors that activate and modulate plant responses DOI
Zhizhong Gong

Journal of Integrative Plant Biology, Год журнала: 2021, Номер 63(3), С. 429 - 430

Опубликована: Март 1, 2021

Язык: Английский

Процитировано

85
The vernalization-induced long non-coding RNA VAS functions with the transcription factor TaRF2b to promote TaVRN1 expression for flowering in hexaploid wheat DOI Creative Commons
Shujuan Xu, Qi Dong, Min Deng

и другие.

Molecular Plant, Год журнала: 2021, Номер 14(9), С. 1525 - 1538

Опубликована: Май 27, 2021

Язык: Английский

Процитировано

63
A review on CRISPR/Cas-based epigenetic regulation in plants DOI
Phanikanth Jogam, Dulam Sandhya, Anshu Alok

и другие.

International Journal of Biological Macromolecules, Год журнала: 2022, Номер 219, С. 1261 - 1271

Опубликована: Авг. 31, 2022

Язык: Английский

Процитировано

53
Gene-by-environment interactions in plants: Molecular mechanisms, environmental drivers, and adaptive plasticity DOI Open Access
Joseph D. Napier, Robert W. Heckman, Thomas Juenger

и другие.

The Plant Cell, Год журнала: 2022, Номер 35(1), С. 109 - 124

Опубликована: Ноя. 7, 2022

Abstract Plants demonstrate a broad range of responses to environmental shifts. One the most remarkable is plasticity, which ability single plant genotype produce different phenotypes in response stimuli. As with all traits, plasticity evolve depends on presence underlying genetic diversity within population. A common approach for evaluating role variation driving differences has been study genotype-by-environment interactions (G × E). G E occurs when genotypes phenotypic trait values environments. In this review, we highlight progress and promising methods identifying key drivers E. Specifically, methodological advances using algorithmic multivariate approaches understand combined new genomic innovations can greatly increase our understanding about molecular These developing be applied proliferating garden networks that capture natural gradients unravel mechanisms An increased used enhance resilience productivity agronomic systems.

Язык: Английский

Процитировано

50
Priming seeds for the future: Plant immune memory and application in crop protection DOI Creative Commons

Zige Yang,

Pengfei Zhi,

Cheng Chang

и другие.

Frontiers in Plant Science, Год журнала: 2022, Номер 13

Опубликована: Июль 29, 2022

Plants have evolved adaptive strategies to cope with pathogen infections that seriously threaten plant viability and crop productivity. Upon the perception of invading pathogens, immune system is primed, establishing an memory allows primed plants respond more efficiently upcoming attacks. Physiological, transcriptional, metabolic, epigenetic changes are induced during defense priming, which essential establishment maintenance memory. As environmental-friendly technique in protection, seed priming could effectively induce In this review, we highlighted recent advances mechanisms associated, discussed challenges exploiting on crops enhance disease resistance.

Язык: Английский

Процитировано

40
Loss of cold tolerance is conferred by absence of the WRKY34 promoter fragment during tomato evolution DOI Creative Commons
Mingyue Guo, Fengjun Yang, Li‐Juan Zhu

и другие.

Nature Communications, Год журнала: 2024, Номер 15(1)

Опубликована: Авг. 6, 2024

Natural evolution has resulted in reduced cold tolerance cultivated tomato (Solanum lycopersicum). Herein, we perform a combined analysis of ATAC-Seq and RNA-Seq cold-sensitive cold-tolerant wild (S. habrochaites). We identify that WRKY34 the most significant association with differential chromatin accessibility expression patterns under stress. find 60 bp InDel promoter causes differences its transcription among 376 accessions. This fragment contains GATA cis-regulatory element binds to SWIBs GATA29, which synergistically suppress Moreover, interferes CBF response pathway through regulating protein levels. Our findings emphasize importance polymorphisms regions their effects on structure gene during crop evolution.

Язык: Английский

Процитировано

14
Unveiling the impact of microplastics and nanoplastics on vascular plants: A cellular metabolomic and transcriptomic review DOI Creative Commons

Fugang Ren,

Jing Huang, Yongqing Yang

и другие.

Ecotoxicology and Environmental Safety, Год журнала: 2024, Номер 279, С. 116490 - 116490

Опубликована: Май 24, 2024

With increasing plastic manufacture and consumption, microplastics/nanoplastics (MP/NP) pollution has become one of the world's pressing global environmental issues, which poses significant threats to ecosystems human health. In recent years, sharp researches have confirmed that MP/NP had direct or indirect effects on vegetative growth sexual process vascular plant. But potential mechanisms remain ambiguous. particles can be adsorbed and/or absorbed by plant roots leaves thus cause diverse This holistic review aims discuss plant, with special emphasis changes metabolic molecular levels. alter substance energy metabolism, as well shifts in gene expression patterns. Key aspects affected stress include carbon nitrogen amino acids biosynthesis hormone signal transduction, related genes, metabolism those involved pathogen defense. Additionally, provides updated insights into physiological responses plants exposed MP/NP, encompassing phenomena such seed/spore germination, photosynthesis, oxidative stress, cytotoxicity, genotoxicity. By examining impact from both perspectives, this sets stage for future investigations complex interactions between pollutants.

Язык: Английский

Процитировано

11
Chromatin‐remodeling complexes: Conserved and plant‐specific subunits in Arabidopsis DOI

Ji‐Yun Shang,

Xin‐Jian He

Journal of Integrative Plant Biology, Год журнала: 2021, Номер 64(2), С. 499 - 515

Опубликована: Дек. 29, 2021

Adenosine triphosphate-dependent chromatin remodeling complexes are important for the regulation of transcription, DNA replication, and genome stability in eukaryotes. Although genetic studies have illustrated various biological functions core accessory subunits chromatin-remodeling plants, identification characterization plants is lagging behind that yeast animals. Recent determined whether how Arabidopsis SWI/SNF, ISWI, INO80, SWR1, CHD remodelers function multi-subunit Arabidopsis. Both conserved plant-specific been identified characterized. These findings provide a basis further molecular mechanisms by which plants.

Язык: Английский

Процитировано

51