Genomic enrichment data illuminate rapid and reticulate evolution of Ampelopsis (Vitaceae) in East Asia DOI
Da Wang, Ying Meng, Menghua Zhang

и другие.

Taxon, Год журнала: 2025, Номер unknown

Опубликована: Май 14, 2025

Abstract Ampelopsis is a genus of the grape family Vitaceae, discontinuously distributed in temperate to subtropical zones Northern Hemisphere but mostly diversified East Asia. Previous phylogenetic studies on have mainly been based few chloroplast markers, resulting unresolved relationships for Asian taxa. Here, we carried out reconstruction and intrageneric reticulate evolution analyses first time extensive single or low‐copy nuclear genomic data obtained by Hyb‐Seq approach. Both strongly support monophyly with its sequential division into several lineages corresponding their biogeographic distribution from North America including Mexico, Europe West Asia, respectively. The largely grouped two major clades characterized topological conflicts among individual gene trees. plastid tree also showed high incongruence Gene estimation error flow were identified as source within lineage, which most likely resulted recent rapid divergence. Our results emphasize that divergence accompanied introgression played significant role complex diversification pattern may be present many other plant

Язык: Английский

Phylogenetic Analysis and Expression Patterns of Triterpenoid Saponin Biosynthesis Genes in 19 Araliaceae Plants DOI Open Access
Chi Ma,

Yu Lin,

Jianwei Yin

и другие.

International Journal of Molecular Sciences, Год журнала: 2025, Номер 26(7), С. 3439 - 3439

Опубликована: Апрель 7, 2025

The Araliaceae family has significant economic and medicinal value. However, the phylogenetic relationships expression patterns of key genes active triterpenoid substance within this are still unclear. In study, we employed comparative transcriptomics to analyze transcriptomes 19 species from 11 genera Araliaceae, aiming elucidate evolutionary history in ginsenoside biosynthesis pathway. Our results divide into two subfamilies: Aralioideae Hydrocotyloideae. is further classified three groups: Aralia-Panax group, Polyscias-Pseudopanax Asian Palmate group. PhyloNet analysis reveals that common ancestor Panax ginseng, quinquefolius, japonicus was an allopolyploid, likely resulting hybridization between notoginseng pseudoginseng. Additionally, all underwent pg-β event, which may be critical for biosynthesis. We discovered exhibit distinct enzyme (β-AS, DDS, CYP450, UGTs) compared other species. These show independent lineages gene trees, suggesting unique functional adaptations enable efficiently synthesize ginsenosides. This study provides a theoretical foundation conservation utilization germplasm resources.

Язык: Английский

Процитировано

0
Genomic enrichment data illuminate rapid and reticulate evolution of Ampelopsis (Vitaceae) in East Asia DOI
Da Wang, Ying Meng, Menghua Zhang

и другие.

Taxon, Год журнала: 2025, Номер unknown

Опубликована: Май 14, 2025

Abstract Ampelopsis is a genus of the grape family Vitaceae, discontinuously distributed in temperate to subtropical zones Northern Hemisphere but mostly diversified East Asia. Previous phylogenetic studies on have mainly been based few chloroplast markers, resulting unresolved relationships for Asian taxa. Here, we carried out reconstruction and intrageneric reticulate evolution analyses first time extensive single or low‐copy nuclear genomic data obtained by Hyb‐Seq approach. Both strongly support monophyly with its sequential division into several lineages corresponding their biogeographic distribution from North America including Mexico, Europe West Asia, respectively. The largely grouped two major clades characterized topological conflicts among individual gene trees. plastid tree also showed high incongruence Gene estimation error flow were identified as source within lineage, which most likely resulted recent rapid divergence. Our results emphasize that divergence accompanied introgression played significant role complex diversification pattern may be present many other plant

Язык: Английский

Процитировано

0