Journal of Experimental Botany,
Год журнала:
2024,
Номер
75(18), С. 5568 - 5584
Опубликована: Июнь 18, 2024
Abstract
In
the
last
20
years,
several
techniques
have
been
developed
for
quantifying
DNA
methylation,
most
studied
epigenetic
marks
in
eukaryotes,
including
gold
standard
method,
whole-genome
bisulfite
sequencing
(WGBS).
WGBS
quantifies
genome-wide
methylation
but
has
inconveniences
rendering
it
less
suitable
population-scale
studies.
The
high
cost
of
deep
and
large
amounts
data
generated
prompted
us
to
seek
an
alternative
approach.
Restricting
studies
parts
genome
would
be
a
satisfactory
had
there
not
major
limitation:
need
select
upstream
targets
corresponding
differentially
methylated
regions
as
targets.
Given
study
numbers
samples,
we
propose
strategy
investigating
variation
natural
populations,
taking
into
account
structural
complexity
genomes,
their
size,
content
unique
coding
versus
repeated
transposable
elements.
We
first
identified
highly
variable
subset
genotypes
representative
biological
diversity
population
by
WGBS.
then
analysed
variations
these
targeted
at
level
capture
(SeqCapBis).
entire
was
validated
applying
another
species.
Our
proof
concept
on
populations
two
forest
species:
Populus
nigra
Quercus
petraea.
Frontiers in Plant Science,
Год журнала:
2024,
Номер
14
Опубликована: Янв. 8, 2024
Climate
change
and
global
warming
represent
the
main
threats
for
many
agricultural
crops.
Tomato
is
one
of
most
extensively
grown
consumed
horticultural
products
can
survive
in
a
wide
range
climatic
conditions.
However,
high
temperatures
negatively
affect
both
vegetative
growth
reproductive
processes,
resulting
losses
yield
fruit
quality
traits.
Researchers
have
employed
different
parameters
to
evaluate
heat
stress
tolerance,
including
evaluation
leaf-
(stomatal
conductance,
net
photosynthetic
rate,
Fv/Fm),
flower-
(inflorescence
number,
flower
stigma
exertion),
pollen-related
traits
(pollen
germination
viability,
pollen
tube
growth)
per
plant.
Moreover,
several
authors
gone
even
further,
trying
understand
plants
molecular
response
mechanisms
this
stress.
The
present
review
focused
on
tomato
during
stage,
since
increase
above
optimum
usually
occurs
late
growing
season.
Reproductive-related
directly
affects
final
are
regulated
by
genes
such
as
transcriptional
factors,
shock
proteins,
related
flower,
flowering,
set,
epigenetic
involving
DNA
methylation,
histone
modification,
chromatin
remodelling
non-coding
RNAs.
We
provided
detailed
list
these
their
function
under
temperature
conditions
defining
with
aim
summarize
recent
findings
pose
attention
candidate
that
could
prompt
selection
constitution
new
thermotolerant
plant
genotypes
able
face
abiotic
challenge.
Biology,
Год журнала:
2021,
Номер
10(8), С. 766 - 766
Опубликована: Авг. 11, 2021
Epigenetics
has
emerged
as
an
important
research
field
for
crop
improvement
under
the
on-going
climatic
changes.
Heritable
epigenetic
changes
can
arise
independently
of
DNA
sequence
alterations
and
have
been
associated
with
altered
gene
expression
transmitted
phenotypic
variation.
By
modulating
plant
development
physiological
responses
to
environmental
conditions,
diversity—naturally,
genetically,
chemically,
or
environmentally
induced—can
help
optimise
traits
in
era
challenged
by
global
climate
change.
Beyond
variation,
modifications
may
contribute
breeding
providing
useful
markers
allowing
use
epigenome
diversity
predict
performance
increase
final
production.
Given
difficulties
transferring
knowledge
mechanisms
from
model
plants
crops,
various
strategies
emerged.
Among
those
are
modelling
frameworks
dedicated
predicting
epigenetically
controlled-adaptive
traits,
epigenetics
vitro
regeneration
accelerate
breeding,
specific
marks
that
modulate
interest.
The
key
challenge
agriculture
faces
21st
century
is
production
speeding
up
resilient
species.
Therefore,
provides
fundamental
molecular
information
potential
direct
applications
enhancement,
tolerance,
adaptation
within
context
Life,
Год журнала:
2023,
Номер
13(2), С. 533 - 533
Опубликована: Фев. 15, 2023
Poplar
(Populus
spp.)
is
a
high-value
crop
for
wood
and
biomass
production
model
organism
tree
physiology
genomics.
The
early
release,
in
2006,
of
the
complete
genome
sequence
P.
trichocarpa
was
followed
by
wealth
studies
that
significantly
enriched
our
knowledge
complex
pathways
inherent
to
woody
plants,
such
as
lignin
biosynthesis
secondary
cell
wall
deposition.
Recently,
attempt
cope
with
challenges
posed
ongoing
climate
change,
fundamental
breeding
programs
poplar
have
gradually
shifted
their
focus
address
responses
abiotic
stresses,
particularly
drought.
Taking
advantage
from
set
modern
genomic
phenotyping
tools,
these
are
now
shedding
light
on
important
processes,
including
embolism
formation
(the
entry
expansion
air
bubbles
xylem)
repair,
impact
drought
stress
yield
quality,
long-term
effects
events.
In
this
review,
we
summarize
status
research
molecular
bases
poplar.
We
highlight
how
can
be
exploited
select
more
tolerant
genotypes
it
translated
other
species
improve
understanding
forest
dynamics
under
rapidly
changing
environmental
conditions.
Agriculture,
Год журнала:
2024,
Номер
14(4), С. 579 - 579
Опубликована: Апрель 5, 2024
Olive
(Olea
europaea
L.)
is
a
crop
of
enormous
economic
and
cultural
importance.
Over
the
years,
worldwide
production
olive
oil
has
been
decreasing
due
to
various
biotic
abiotic
factors.
The
current
drop
in
resulting
from
climate
change
raises
concerns
regarding
fulfillment
our
daily
demand
for
led
significant
increase
market
prices.
In
future,
there
will
be
higher
chance
that
we
face
severe
shortage
oil,
which
could
harm
both
sector
food
supply.
As
groves
cover
more
than
5
million
hectares
European
Union
alone,
need
preserve
context
extreme
climatic
events
imperative.
drought
considered
one
most
limiting
factors
agriculture,
drought-resistant
varieties
sustainable
irrigation
strategies
are
being
developed
mitigate
impact
on
productivity
secure
future
supply
oil.
This
review
focuses
recently
gained
insights
into
stress
trees
through
omics
phenomics
approaches
unravelling
mechanisms
may
lead
developing
new
tolerant
against
elicited
by
changes
growing
systems.
Abstract
Background
In
plants,
epigenetic
stress
memory
has
so
far
been
found
to
be
largely
transient.
Here,
we
wanted
assess
the
heritability
of
heat
stress-induced
and
transcriptomic
changes
following
woodland
strawberry
(
Fragaria
vesca
)
reproduction.
Strawberry
is
an
ideal
model
study
inheritance
because
it
presents
two
modes
reproduction:
sexual
(self-pollinated
plants)
asexual
(clonally
propagated
plants
named
daughter
plants).
Taking
advantage
this
model,
investigated
whether
DNA
methylation
can
transmitted
via
Results
Our
genome-wide
provides
evidence
for
acquisition
maintenance
in
F.
.
We
that
specific
marks
or
epimutations
are
stably
over
at
least
three
generations.
Some
were
associated
with
transcriptional
after
stress.
Conclusion
findings
show
methylome
transcriptome
respond
a
high
level
flexibility
Notably,
independent
acquired
same
those
inherited
by
their
progenies.
Overall,
progenies
retain
some
information
genome
past
stresses
encountered
progenitors.
This
molecular
memory,
also
documented
level,
might
involved
functional
plasticity
adaptation.
Finally,
these
may
contribute
novel
breeding
approaches
climate-ready
plants.
International Journal of Molecular Sciences,
Год журнала:
2024,
Номер
25(15), С. 8229 - 8229
Опубликована: Июль 28, 2024
Drought
significantly
challenges
global
food
security,
necessitating
a
comprehensive
understanding
of
plant
molecular
responses
for
effective
mitigation
strategies.
Epigenetic
modifications,
such
as
DNA
methylation
and
histone
are
key
in
regulating
genes
hormones
essential
drought
response.
While
microRNAs
(miRNAs)
primarily
regulate
gene
expression
post-transcriptionally,
they
can
also
interact
with
epigenetic
pathways
potential
effectors
that
influence
chromatin
remodeling.
Although
the
role
miRNAs
memory
is
still
being
explored,
their
contribution
to
response
requires
examining
these
indirect
effects
on
modifications.
A
aspect
this
exploration
drought-adapted
plants,
offering
insights
into
transgenerational
inheritance
adaptive
traits.
Understanding
mechanisms
govern
maintenance
erasure
imprints
provides
nuanced
how
plants
balance
stability
flexibility
epigenomes.
major
focus
dynamic
interaction
between
hormonal
pathways—such
those
abscisic
acid
(ABA),
ethylene,
jasmonates,
salicylic
(SA)—and
mechanisms.
This
interplay
crucial
fine-tuning
during
stress,
leading
physiological
morphological
adaptations
enhance
resilience.
review
highlights
transformative
advanced
technologies,
bisulfite
sequencing
CRISPR-Cas9,
providing
water
deficit
conditions.
These
technologies
pave
way
developing
drought-tolerant
crops,
which
vital
sustainable
agriculture.