The need for an integrated multi‐OMICs approach in microbiome science in the food system DOI Creative Commons
Ilario Ferrocino, Kalliopi Rantsiou, Ryan McClure

и другие.

Comprehensive Reviews in Food Science and Food Safety, Год журнала: 2023, Номер 22(2), С. 1082 - 1103

Опубликована: Янв. 12, 2023

Microbiome science as an interdisciplinary research field has evolved rapidly over the past two decades, becoming a popular topic not only in scientific community and among general public, but also food industry due to growing demand for microbiome-based technologies that provide added-value solutions. expanded context of systems, strongly driven by methodological advances different -omics fields leverage our understanding microbial diversity function. However, managing integrating complex layers are still challenging. Within Coordinated Support Action MicrobiomeSupport (https://www.microbiomesupport.eu/), project supported European Commission, workshop "Metagenomics, Metaproteomics Metabolomics: need data integration microbiome research" gathered 70 participants from relevant discuss challenges promote switch descriptive studies functional studies, elucidating biology interactive roles microbiomes systems. A combination is proposed. This will reduce biases resulting each individual technology result more comprehensive view biological system whole. Although combinations datasets rare, advanced bioinformatics tools artificial intelligence approaches can contribute understanding, prediction, management microbiome, thereby providing basis improvement quality safety.

Язык: Английский

Climate change impacts on plant pathogens, food security and paths forward DOI Open Access
Brajesh K. Singh, Manuel Delgado‐Baquerizo, Eleonora Egidi

и другие.

Nature Reviews Microbiology, Год журнала: 2023, Номер 21(10), С. 640 - 656

Опубликована: Май 2, 2023

Язык: Английский

Процитировано

561

Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi DOI Creative Commons
Stefanie Lutz, Natacha Bodenhausen, Julia Heß

и другие.

Nature Microbiology, Год журнала: 2023, Номер 8(12), С. 2277 - 2289

Опубликована: Ноя. 29, 2023

Alternative solutions to mineral fertilizers and pesticides that reduce the environmental impact of agriculture are urgently needed. Arbuscular mycorrhizal fungi (AMF) can enhance plant nutrient uptake stress; yet, large-scale field inoculation trials with AMF missing, so far, results remain unpredictable. We conducted on-farm experiments in 54 fields Switzerland quantified effects on maize growth. Growth response was highly variable, ranging from -12% +40%. With few soil parameters mainly microbiome indicators, we could successfully predict 86% variation growth inoculation. The abundance pathogenic fungi, rather than availability, best predicted (33%) success. Our indicate indicators offer a sustainable biotechnological perspective success at beginning growing season. This predictability increases profitability engineering as tool for agricultural management.

Язык: Английский

Процитировано

94

Enhancing climate change resilience in agricultural crops DOI Creative Commons
Yoselin Benitez‐Alfonso, Beth K Soanes, Sibongile Zimba

и другие.

Current Biology, Год журнала: 2023, Номер 33(23), С. R1246 - R1261

Опубликована: Дек. 1, 2023

Climate change threatens global food and nutritional security through negative effects on crop growth agricultural productivity. Many countries have adopted ambitious climate mitigation adaptation targets that will exacerbate the problem, as they require significant changes in current agri-food systems. In this review, we provide a roadmap for improved production encompasses effective transfer of knowledge into plant breeding management strategies underpin sustainable agriculture intensification resilience. We identify main problem areas highlight outstanding questions potential solutions can be applied to mitigate impacts Although translation scientific advances lags far behind technology, consider holistic approach, combining disciplines collaborative efforts, drive better connections between research, policy, needs society.

Язык: Английский

Процитировано

61

The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application DOI Open Access
Francis Martin, Marcel G. A. van der Heijden

New Phytologist, Год журнала: 2024, Номер 242(4), С. 1486 - 1506

Опубликована: Янв. 31, 2024

Summary Mycorrhizal symbioses between plants and fungi are vital for the soil structure, nutrient cycling, plant diversity, ecosystem sustainability. More than 250 000 species associated with mycorrhizal fungi. Recent advances in genomics related approaches have revolutionized our understanding of biology ecology associations. The genomes 250+ been released hundreds genes that play pivotal roles regulating symbiosis development metabolism characterized. rDNA metabarcoding metatranscriptomics provide novel insights into ecological cues driving communities functions expressed by these associations, linking to traits such as acquisition organic matter decomposition. Here, we review genomic studies revealed involved uptake development, discuss adaptations fundamental evolution lifestyles. We also evaluated services provided networks how hold promise sustainable agriculture forestry enhancing stress tolerance. Overall, unraveling intricate dynamics is paramount promoting sustainability addressing current pressing environmental concerns. This ends major frontiers further research.

Язык: Английский

Процитировано

60

Unveiling the significance of rhizosphere: Implications for plant growth, stress response, and sustainable agriculture DOI Creative Commons

Wogene Solomon,

Tibor Janda, Zoltán Molnár

и другие.

Plant Physiology and Biochemistry, Год журнала: 2023, Номер 206, С. 108290 - 108290

Опубликована: Дек. 22, 2023

In the rhizosphere, activities within all processes and functions are primarily influenced by plant roots, microorganisms present in interactions between roots microorganisms. The a dynamic zone surrounding provides an ideal environment for diverse microbial community, which significantly shapes growth development. Microbial activity rhizosphere can promote increasing nutrient availability, influencing hormonal signaling, repelling or outcompeting pathogenic strains. Understanding associations soil has potential to revolutionize crop yields, improve productivity, minimize reliance on chemical fertilizers, sustainable technologies. microbiome could play vital role next green revolution contribute eco-friendly agriculture. However, there still knowledge gaps concerning root-environment interactions, particularly regarding Advances metabolomics have helped understand communication plants biota, yet challenges persist. This article overview of latest advancements comprehending interplay microbes, been shown impact crucial factors such as growth, gene expression, absorption, pest disease resistance, alleviation abiotic stress. By improving these aspects, agriculture practices be implemented increase overall productivity ecosystems.

Язык: Английский

Процитировано

58

Emerging Pathways for Engineering the Rhizosphere Microbiome for Optimal Plant Health DOI
Shengdie Yang, Hongwei Liu,

Penghao Xie

и другие.

Journal of Agricultural and Food Chemistry, Год журнала: 2023, Номер 71(11), С. 4441 - 4449

Опубликована: Март 8, 2023

The increasing impacts of global climate change on crop performance pose a significant threat to food security. rhizosphere microbiomes intimately interact with the plant and can largely facilitate plants in growth promotion stress resistance via multiple mechanisms. This review focuses approaches for harnessing produce beneficial effects toward enhanced productivity, including use organic inorganic amendments, microbial inoculants. Emerging methods, such as utilization synthetic consortia, host-mediated microbiome engineering, prebiotics made from specific root exudates, breeding promote plant–microbiome interactions, are highlighted. Updating our knowledge this field is critical understanding improving thereby enhancing adaptiveness changing environmental conditions.

Язык: Английский

Процитировано

55

Biotic stress-induced changes in root exudation confer plant stress tolerance by altering rhizospheric microbial community DOI Creative Commons
Indrani Sharma, Sampurna Kashyap, Niraj Agarwala

и другие.

Frontiers in Plant Science, Год журнала: 2023, Номер 14

Опубликована: Март 10, 2023

Every organism on the earth maintains some kind of interaction with its neighbours. As plants are sessile, they sense varied above-ground and below-ground environmental stimuli decipher these dialogues to microbes neighbouring via root exudates as chemical signals resulting in modulation rhizospheric microbial community. The composition depends upon host genotype, cues, other biotic factors. Crosstalk agents such herbivores, microbes, can change plant exudate composition, which may permit either positive or negative interactions generate a battlefield rhizosphere. Compatible utilize carbon sources their organic nutrients show robust co-evolutionary changes changing circumstances. In this review, we have mainly focused different factors responsible for synthesis alternative leading rhizosphere microbiota. Understanding stress-induced community help us devise strategies engineering microbiomes enhance adaptive capabilities stressful environment.

Язык: Английский

Процитировано

55

Deep discovery informs difficult deployment in plant microbiome science DOI Creative Commons
Dor Russ, Connor R. Fitzpatrick, Paulo José Pereira Lima Teixeira

и другие.

Cell, Год журнала: 2023, Номер 186(21), С. 4496 - 4513

Опубликована: Окт. 1, 2023

Plant-associated microbiota can extend plant immune system function, improve nutrient acquisition and availability, alleviate abiotic stresses. Thus, naturally beneficial microbial therapeutics are enticing tools to productivity. The basic definition of across species ecosystems, combined with the development reductionist experimental models manipulation phenotypes microbes, has fueled interest in its translation agriculture. However, great majority microbes exhibiting plant-productivity traits lab greenhouse fail field. Therapeutic must reach détente, establishment uneasy homeostasis, system, invade heterogeneous pre-established plant-associated communities, persist a new potentially remodeled community. Environmental conditions alter community structure thus impact engraftment therapeutic microbes. We survey recent breakthroughs, challenges, opportunities translating from

Язык: Английский

Процитировано

52

Microbiome Interconnectedness throughout Environments with Major Consequences for Healthy People and a Healthy Planet DOI
Angela Sessitsch, Steven A. Wakelin, Michael Schloter

и другие.

Microbiology and Molecular Biology Reviews, Год журнала: 2023, Номер 87(3)

Опубликована: Июнь 27, 2023

Microbiomes have highly important roles for ecosystem functioning and carry out key functions that support planetary health, including nutrient cycling, climate regulation, water filtration. are also intimately associated with complex multicellular organisms such as humans, other animals, plants, insects perform crucial the health of their hosts. Although we starting to understand microbiomes in different systems interconnected, there is still a poor understanding microbiome transfer connectivity. In this review show how connected within transferred between habitats discuss functional consequences these connections. Microbiome occurs abiotic (e.g., air, soil, water) biotic environments, can either be mediated through vectors or food) direct interactions. Such processes may include transmission pathogens antibiotic resistance genes. However, here, highlight fact positive effects on human where transmitted microorganisms potentially providing novel adaptation ecosystems.

Язык: Английский

Процитировано

51

Nanobiotechnology to advance stress resilience in plants: Current opportunities and challenges DOI Creative Commons
Munazza Ijaz, Fahad Khan, Temoor Ahmed

и другие.

Materials Today Bio, Год журнала: 2023, Номер 22, С. 100759 - 100759

Опубликована: Авг. 6, 2023

A sustainable and resilient crop production system is essential to meet the global food demands. Traditional chemical-based farming practices have become ineffective due increased population pressures extreme climate variations. Recently, nanobiotechnology considered be a promising approach for by improving targeted nutrient delivery, pest management efficacy, genome editing efficiency, smart plant sensor implications. This review provides deeper mechanistic insights into potential applications of engineered nanomaterials improved stress resilience productivity. We also discussed technology readiness level nano-based strategies provide clear picture our current perspectives field. Current challenges implications in way upscaling are along with regulatory requirements mitigate associated risks facilitate public acceptability order develop research objectives that nano-enabled Agri-tech revolution. Conclusively, this not only highlights importance approaches health, but demonstrated their roles counter security concerns.

Язык: Английский

Процитировано

49