Plant metabolomics: applications and challenges in the era of multi-omics big data

aBIOTECH, Год журнала: 2025, Номер 6(1), С. 116 - 132

Опубликована: Янв. 23, 2025

Abstract Plant metabolites are crucial for the growth, development, environmental adaptation, and nutritional quality of plants. metabolomics, a key branch systems biology, involves comprehensive analysis interpretation composition, variation, functions these metabolites. Advances in technology have transformed plant metabolomics into sophisticated process involving sample collection, metabolite extraction, high-throughput analysis, data processing, multidimensional statistical analysis. In today’s era big data, field is witnessing an explosion acquisition, offering insight complexity dynamics metabolism. Moreover, multiple omics strategies can be integrated to reveal interactions regulatory networks across different molecular levels, deepening our understanding biological processes. this review, we highlight recent advances challenges emphasizing roles technique improving crop varieties, enhancing value, increasing stress resistance. We also explore scientific foundations its applications medicine, ecological conservation.

Язык: Английский

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The coordinated interaction or regulation between floral pigments and volatile organic compounds

Horticultural Plant Journal, Год журнала: 2024, Номер unknown

Опубликована: Янв. 1, 2024

Floral color and scent are crucial for plant-environment interactions, especially in reproduction by attracting pollinators fertilization. They also have wide applications cosmetic, pharmaceutical, nutraceutical industries. Plant pigments typically classified as chlorophylls, flavonoids, carotenoids, betalains, while volatile organic compounds (VOCs) grouped terpenes, phenylpropanoids/benzenoids, fatty acid derivatives. Significant progresses been made understanding the biosynthesis regulation of these floral VOCs. Despite differences their biosynthetic pathways, VOCs biochemically connected exhibit synergistic interactions during flower development response to biotic abiotic stresses, suggesting existence pleiotropic regulators or complex mechanisms co-regulating biosynthesis. In this review, we summarize outline metabolite pathways mainly integrating phenylpropanoids/benzenoids. We provide a series scenarios illustrating coordinated scent. Finally, suggest areas future research. hope review will spark interest research direction stimulate further studies.

Язык: Английский

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Agrobacterium rhizogenes-mediated marker-free transformation and gene editing system revealed that AeCBL3 mediates the formation of calcium oxalate crystal in kiwifruit

Molecular Horticulture, Год журнала: 2024, Номер 4(1)

Опубликована: Янв. 2, 2024

Abstract The transformation and gene editing of the woody species kiwifruit are difficult time-consuming. fast marker-free genetic modification system for has not been developed yet. Here, we establish a rapid efficient mediated by Agrobacterium rhizogenes kiwifruit. Moreover, removing-root-tip method was to significantly increase regeneration efficiency transgenic hairy roots. Through A. -mediated CRISPR/Cas9 editing, efficiencies CEN4 AeCBL3 achieved 55 50%, respectively. And several homozygous knockout lines both genes were obtained. Our successfully applied in two different ( Actinidia chinensis ‘Hongyang’ A.eriantha ‘White’). Next, used study formation calcium oxalate (CaOx) crystals To date, little is known about how CaOx crystal formed plants. results indicated that overexpression enhanced formation, but its via impaired Together, maker-free highly CRISPR-Cas9 our work revealed novel mediating provided clue elaborate underlying mechanisms. Graphical abstract

Язык: Английский

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Postharvest treatment with Bacillus velezensis LX mitigates disease incidence and alters the microbiome on kiwifruit surface

Postharvest Biology and Technology, Год журнала: 2024, Номер 211, С. 112843 - 112843

Опубликована: Фев. 22, 2024

Язык: Английский

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Analysis of WD40 genes in kiwifruit reveals the key role of the light-induced AcTTG1-AcMYB75-AcbHLH2 complex in anthocyanin accumulation

International Journal of Biological Macromolecules, Год журнала: 2025, Номер 297, С. 139758 - 139758

Опубликована: Янв. 12, 2025

Язык: Английский

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The potential function of chalcone isomerase (CHI) gene on flavonoid accumulation in Amomum tsao-ko fruit by transcriptome and metabolome

International Journal of Biological Macromolecules, Год журнала: 2025, Номер 297, С. 139897 - 139897

Опубликована: Янв. 14, 2025

Язык: Английский

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Key role of hormone signal transduction and lipid metabolism in the development of Nitraria sibirica leaves: An integrated metabolomic and transcriptomic analysis

Industrial Crops and Products, Год журнала: 2024, Номер 212, С. 118322 - 118322

Опубликована: Март 1, 2024

Язык: Английский

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Flavonoid profile of Anoectochilus roxburghii (Wall.) Lindl. Under short-term heat stress revealed by integrated metabolome, transcriptome, and biochemical analyses

Plant Physiology and Biochemistry, Год журнала: 2023, Номер 201, С. 107896 - 107896

Опубликована: Июль 14, 2023

Язык: Английский

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Deep inside the genetic regulation of ascorbic acid during fruit ripening and postharvest storage

Postharvest Biology and Technology, Год журнала: 2023, Номер 204, С. 112436 - 112436

Опубликована: Июнь 28, 2023

Язык: Английский

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Exploring the roles of microorganisms and metabolites in the 30-year aging process of the dried pericarps of Citrus reticulata 'Chachi' based on high-throughput sequencing and comparative metabolomics

Food Research International, Год журнала: 2023, Номер 172, С. 113117 - 113117

Опубликована: Июнь 12, 2023

GuangChenpi (GCP), the dried pericarps of Citrus reticulata 'Chachi', has been consumed daily as a food and dietary supplement in China for centuries. Its health benefits are generally recognized to be dependent on storage time. However, specific roles microorganisms metabolites during long-term still unclear. In this study, comparative metabolomics high-throughput sequencing techniques were used investigate effects co-existing GCP stored from 1 30 years. total, 386 identified characterized. Most compounds flavonoids (37%), followed by phenolic acids (20%). Seventeen differentially upregulated potential key GCP, 8 them screened out active ingredients Venn diagram analyses verified network pharmacology molecular docking. addition, could promote accumulation secondary metabolites. Regarding microbiota, Xeromyces dominated whole 30-year aging process.Moreover, Spearman correlation analysis indicated that Bacillus thuringiensis bisporus, dominant bacterial fungal species, strongly associated with Our results suggested change caused microbial is one mechanisms affecting process. study provides novel functional insights research perspectives microorganism-associated metabolite changes may improve

Язык: Английский

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