Chromosome engineering points to thecis-acting mechanism of chromosome arm-specific telomere length setting and robustness of plant phenotype, chromatin structure and gene expression DOI Open Access
Ondřej Helia,

Barbora Matúšová,

Kateřina Havlová

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 11, 2024

Abstract The study investigates the impact of targeted chromosome engineering on telomere dynamics, chromatin structure, gene expression, and phenotypic stability in Arabidopsis thaliana . Using precise CRISPR/Cas-based engineering, reciprocal translocations arms were introduced between non-homologous chromosomes. subsequent homozygous generations plants assessed for phenotype, transcriptomic changes modifications near translocation breakpoints, length maintenance. Phenotypically, translocated lines indistinguishable from wild-type plants, as confirmed through morphological assessments principal component analysis. Gene expression profiling detected minimal differential with affected genes dispersed across genome, indicating negligible transcriptional impact. Similarly, ChIPseq analysis showed no substantial alterations enrichment key histone marks (H3K27me3, H3K4me1, H3K56ac) junction sites or genome. Finally, bulk arm-specific lengths remained stable multiple generations, except minor variations one line. These findings highlight remarkable genomic robustness A. despite large-scale chromosomal rearrangements. offers insights into cis -acting mechanisms underlying setting establishes feasibility studies plant genome evolution crop improvement strategies. Significance statement This demonstrates maintaining stability, integrity, phenotype translocations. It underscores potential advancing research improvement, contributes to a deeper understanding opens new avenues precision breeding plants.

Язык: Английский

Precise deletion, replacement and inversion of large DNA fragments in plants using dual prime editing DOI Creative Commons

Yidi Zhao,

Zhengwei Huang,

Ximeng Zhou

и другие.

Nature Plants, Год журнала: 2025, Номер unknown

Опубликована: Янв. 13, 2025

Язык: Английский

Процитировано

3

Can a plant biologist fix a thermostat? DOI Creative Commons
Todd P. Michael

New Phytologist, Год журнала: 2025, Номер unknown

Опубликована: Янв. 2, 2025

Summary The shift to reductionist biology at the dawn of genome era yielded a ‘parts list’ plant genes and nascent understanding complex biological processes. Today, with genomics in full swing, advances high‐definition enabled precise temporal spatial analyses systems down single‐cell level. These insights, coupled artificial intelligence‐driven silico design, are propelling development first synthetic plants. By integrating approaches, researchers not only reimagining plants as sources food, fiber, fuel but also ‘environmental thermostats’ capable mitigating impacts changing climate.

Язык: Английский

Процитировано

0

Recent advances in plant kinetochore research DOI Creative Commons
Elena Kozgunova

Frontiers in Cell and Developmental Biology, Год журнала: 2025, Номер 12

Опубликована: Янв. 22, 2025

Faithful chromosome segregation is crucial for cell division in eukaryotes, facilitated by the kinetochore, a multi-subunit protein complex that connects chromosomes to spindle microtubules. Recent research has significantly advanced our understanding of kinetochore function plants, including surprising findings about assembly checkpoint, composition inner and unique arrangement holocentric Cuscuta species. Additionally, some proteins plants have been implicated roles beyond segregation, such as cytokinesis regulation involvement developmental processes. This review summarizes recent insights into plant biology, compares kinetochores with those animals fungi, highlights key open questions potential future directions field.

Язык: Английский

Процитировано

0

Epigenetic state and gene expression remain stable after CRISPR/Cas‐mediated chromosomal inversions DOI Creative Commons
Solmaz Khosravi,

Rebecca Hinrichs,

Michelle Rönspies

и другие.

New Phytologist, Год журнала: 2025, Номер unknown

Опубликована: Янв. 29, 2025

Summary The epigenetic state of chromatin, gene activity and chromosomal positions are interrelated in plants. In Arabidopsis thaliana , chromosome arms DNA‐hypomethylated enriched with the euchromatin‐specific histone mark H3K4me3, while pericentromeric regions DNA‐hypermethylated heterochromatin‐specific H3K9me2. We aimed to investigate how location affects stability expression by engineering. Two inversions different sizes were induced using CRISPR/Cas9 move heterochromatic, pericentric sequences into euchromatic regions. status these lines was investigated whole‐genome bisulfite sequencing chromatin immunoprecipitation. Gene changes following induction studied via transcriptome analysis. Both had a minimal impact on global distribution marks DNA methylation patterns, although minor observed across genome. Notably, inverted their borders retained original profiles. analysis showed that only 0.5–1% genes differentially expressed genome‐wide inversions. CRISPR/Cas‐induced minimally affect landscape expression, preserving profiles subsequent generations.

Язык: Английский

Процитировано

0

Chromosome engineering points to the cis‐acting mechanism of chromosome arm‐specific telomere length setting and robustness of plant phenotype, chromatin structure and gene expression DOI Creative Commons
Ondřej Helia,

Barbora Matúšová,

Kateřina Havlová

и другие.

The Plant Journal, Год журнала: 2025, Номер 121(4)

Опубликована: Фев. 1, 2025

SUMMARY The study investigates the impact of targeted chromosome engineering on telomere dynamics, chromatin structure, gene expression, and phenotypic stability in Arabidopsis thaliana . Using precise CRISPR/Cas‐based engineering, reciprocal translocations arms were introduced between non‐homologous chromosomes. subsequent homozygous generations plants assessed for phenotype, transcriptomic changes modifications near translocation breakpoints, length maintenance. Phenotypically, translocated lines indistinguishable from wild‐type plants, as confirmed through morphological assessments principal component analysis. Gene expression profiling detected minimal differential with affected genes dispersed across genome, indicating negligible transcriptional impact. Similarly, ChIPseq analysis showed no substantial alterations enrichment key histone marks (H3K27me3, H3K4me1, H3K56ac) junction sites or genome. Finally, bulk arm‐specific lengths remained stable multiple generations, except minor variations one line. These findings highlight remarkable genomic robustness A. despite large‐scale chromosomal rearrangements. offers insights into cis ‐acting mechanisms underlying setting establishes feasibility studies plant genome evolution crop improvement strategies.

Язык: Английский

Процитировано

0

Practical Applications of Minichromosomes in Modern Agriculture for Better Crops DOI
Muhammad Naeem Sattar,

Sallah A. Al Hashedi,

Muhammad Munir

и другие.

Опубликована: Янв. 1, 2025

Язык: Английский

Процитировано

0

Past innovations and future possibilities in plant chromosome engineering DOI Creative Commons

Yang Liu,

Qian Liu, Congyang Yi

и другие.

Plant Biotechnology Journal, Год журнала: 2024, Номер unknown

Опубликована: Ноя. 29, 2024

Summary Plant chromosome engineering has emerged as a pivotal tool in modern plant breeding, facilitating the transfer of desirable traits through incorporation alien fragments into plants. Here, we provide comprehensive overview past achievements, current methodologies and future prospects engineering. We begin by examining successful integration specific examples such rye segments (e.g. 1BL/1RS translocation), Dasypyrum villosum 6VS segment for powdery mildew resistance), Thinopyrum intermedium rust resistance genes) elongatum Fusarium head blight genes). In addition to trait transfer, advancements centromere have opened new possibilities chromosomal manipulation. This includes development minichromosomes via centromere‐mediated techniques, generation haploids CENH3 gene editing, induction aneuploidy using KaryoCreate. The advent CRISPR/Cas technology further revolutionized engineering, enabling large‐scale rearrangements, inversions translocations, well targeted insertion large DNA increasing genetic recombination frequency. These significantly expanded toolkit improvement plants, opening horizons breeding.

Язык: Английский

Процитировано

3

Plant kinetochore complex: composition, function, and regulation DOI Creative Commons

Yinghong Xie,

Mingliang Wang,

Beixin Mo

и другие.

Frontiers in Plant Science, Год журнала: 2024, Номер 15

Опубликована: Окт. 10, 2024

The kinetochore complex, an important protein assembly situated on the centromere, plays a pivotal role in chromosome segregation during cell division. Like animals and fungi, plant complex is for maintaining stability, regulating microtubule attachment, executing error correction mechanisms, participating signaling pathways to ensure accurate segregation. This review summarizes composition, function, regulation of emphasizing interactions proteins with centromeric DNAs (cenDNAs) RNAs (cenRNAs). Additionally, applications histone H3 variant (the core CENH3, first identified as CENP-A mammals) generation ploidy-variable plants synthesis artificial chromosomes (PACs) are discussed. serves comprehensive roadmap researchers delving into exploration, highlighting potential driving technological innovations synthetic genomics biotechnology.

Язык: Английский

Процитировано

1

The B Chromosome: An Optimum Platform For Maize Minichromosome Engineering DOI
Xin Liu,

Z Chen,

Xiaowen Shi

и другие.

Critical Reviews in Plant Sciences, Год журнала: 2024, Номер unknown, С. 1 - 16

Опубликована: Ноя. 13, 2024

The synthesis of maize artificial chromosomes/minichromosomes holds great promise in preparing worldwide production to address the challenges frequent extreme weather events, population growth, and evolving dietary patterns. Using chromosomes can mitigate drawbacks associated with conventional transgenic approaches, such as random integration, linkage drag, unpredictable expression levels. While application de novo assembly constructing plant has been constrained by complexity epigenetic nature centromeres, a promising strategy involves top-down approach through truncating nonessential supernumerary chromosome, B chromosome. This review summarizes genetic characteristics chromosome highlights advantages engineering it into minichromosome platform (miniB). We also progress, potential applications, prospects miniB engineering. Taken together, development engineered shows for breeding high-yield, high-quality, multiple stress-tolerant varieties.

Язык: Английский

Процитировано

1

CARROT (DAUCUS CAROTA L.) CHROMOSOME ANALYSIS AND THEIR IMPACT ON GENETIC DIVERSITY DOI Open Access

GR ARISTYA

SABRAO Journal of Breeding and Genetics, Год журнала: 2024, Номер 56(6), С. 2321 - 2330

Опубликована: Дек. 31, 2024

Carrot (Daucus carota L.) is a widely cultivated root crop due to its substantial nutritional values, including elevated levels of essential vitamins and antioxidants.The apposite study aimed determine the chromosomes' mitotic time numbers.The research used modified squash method, chromosomes preparation steps, such as fixation, maceration, staining.The comparison two carrot cultivars, i.e., Berastagi Ta-Fung, highlighted similarities in chromosome morphology, size, karyotype formulas, with some disparity formula unveiling their unique genetic attributes distinctions.The established times chromosomal formulas emerged 09:00 AM-10:00 AM (2n = 2x 18 m) AM-10:10 14 m + 4 sm) for cultivars respectively, respective karyotypes ideograms.In count, congruence between highlights shared foundation and, albeit structural variations.Such primary data presented lays future breeding improvement both cultivars.

Язык: Английский

Процитировано

1