Regulation of Metabolites by Nutrients in Plants DOI Open Access
Akash Tariq,

Fanjiang Zeng,

Corina Graciano

и другие.

Опубликована: Март 3, 2023

Chapter 1 Regulation of Metabolites by Nutrients in Plants Akash Tariq, Tariq Xinjiang Key Laboratory Desert Plant Roots Ecology and Vegetation Restoration, Institute Geography, Chinese Academy Sciences, Urumqi, China State Oasis Ecology, Cele National Station Observation Research for Desert-Grassland Ecosystems, Cele, University Beijing, ChinaSearch more papers this authorFanjiang Zeng, Fanjiang Zeng authorCorina Graciano, Corina Graciano Instituto de Fisiología Vegetal, Consejo Nacional Investigaciones Científicas y Técnicas, Universidad La Plata, Buenos Aires, ArgentinaSearch authorAbd Ullah, Abd Ullah authorSehrish Sadia, Sehrish Sadia Department Biological Veterinary Animal Lahore, PakistanSearch authorZeeshan Ahmed, Zeeshan Ahmed authorGhulam Murtaza, Ghulam Murtaza Faculty Environmental Science Engineering, Kunming Technology, Kunming, PR authorKhasan Ismoilov, Khasan Ismoilov CAS Biogeography Bioresource Arid Land, authorZhihao Zhang, Zhihao Zhang author Book Editor(s):Vijay Pratap Singh, Vijay Singh Allahabad, Prayagraj, IndiaSearch authorManzer H. Siddiqui, Manzer Siddiqui King Saud University, Riyadh, Saudi ArabiaSearch First published: 03 March 2023 https://doi.org/10.1002/9781119803041.ch1Citations: 2 AboutPDFPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShareShare a linkShare onEmailFacebookTwitterLinkedInRedditWechat Summary Mineral nutrition plays vital role plant growth metabolism. To date, 17 essential nutrients have been identified that are direly needed growth. Nitrogen (N), phosphorus (P), potassium (K) among the most important macronutrients, whereas micronutrients include chloride (Cl), copper (Cu), manganese (Mn), iron (Fe), zinc (Zn), cobalt (Co), molybdenum (Mo), nickel (Ni). Each mineral carries equal importance, deficiency any them can affect disrupt life cycle. treasure troves bioactive metabolites essentially regulate nearly all fundamental processes like growth, reproduction, environmental responses. These divided into two major categories, i.e. primary (PMs) secondary (SMs) according their functions. There is strong linkage between nutrients. Biosynthesis involves various metabolic pathways such as absorption, carbon assimilation, photosynthesis, protoplast formation, respiration, transpiration, translocation, storage. regulated available different forms soil solution. N necessary biosynthesis PMs (i.e. amino acids, chlorophyll, nucleic lipids, proteins, enzymes) SMs flavonoids phenolic compounds). P sugar phosphates, phospholipids, DNA, RNA, nucleotide synthesis well actively involved energy K mediates sugars, organic antioxidants also many regulatory roles. Similarly, (S, Ca, Mg, Fe, Cu, Mn, B, Cl) wide array flavonoids, phytohormones, vitamins, antioxidants, glucosinolates, cofactors crucial development. Availability composition profound effect on type amount produced. So there lies an increased interest unraveling roles metabolites. 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Язык: Английский

Soil metabolomics - current challenges and future perspectives DOI Creative Commons
Robert W. Brown, Michaela Reay, Florian Centler

и другие.

Soil Biology and Biochemistry, Год журнала: 2024, Номер 193, С. 109382 - 109382

Опубликована: Март 12, 2024

Soil is an extremely complex and dynamic matrix, in part, due to the wide diversity of organisms living within it. organic matter (SOM) fundamental substrate on which delivery ecosystem services depends, providing metabolic fuel drive soil function. As such, studying metabolome (the concentration low molecular weight metabolites), as a subset SOM, holds potential greatly expand our understanding behaviour, fate, interaction functional significance small molecules soil. Encompassing range chemical classes (including amino acids, peptides, lipids carbohydrates) large number individual (ca. n = 105 106), resultant (indirect) output several layers biological hierarchy, namely metagenome, metatranscriptome metaproteome. it may also provide support validation for these "multi-omics" datasets. We present case increased use untargeted metabolomics biochemistry, particularly furthering functions driving SOM composition biogeochemical cycling. Further, we discuss scale challenge terms metabolite extraction, analysis interpretation plant-soil-microbial systems. Lastly, highlight key knowledge gaps currently limit metabolomic approaches better understand processes, including: (i) datasets; (ii) source, emission fate soil-derived volatile compounds (VOCs), (iii) assessing temporal fluxes metabolites, (iv) monitoring ecological interactions rhizosphere. While application science still its relative infancy, importance biochemical system relation regulation, management underpinning further elucidating links between organisms, well ability community process cycle nutrients.

Язык: Английский

Процитировано

19

Metabolic GWAS‐based dissection of genetic bases underlying the diversity of plant metabolism DOI Open Access
Chuanying Fang, Jie Luo

The Plant Journal, Год журнала: 2018, Номер 97(1), С. 91 - 100

Опубликована: Сен. 19, 2018

Plants have served as sources providing humans with metabolites for food and nutrition, biomaterials living, treatment pain disease. produce a huge array of metabolites, an immense diversity at both the population individual levels. Dissection genetic bases metabolic has attracted increasing research attention. The concept genome-wide association study (GWAS) was extended to studies on plant metabolome that benefitted from development mass-spectrometry-based analytical systems genome sequencing technologies. Metabolic (mGWAS) is one most powerful tools global identification determinants metabolism. Recently, mGWAS been performed various species continuous improvements, deeper insights into diversity. In this review, we discuss fully achievements date remaining challenges are associated mGWAS-based multi-dimensional analysis. We begin summary GWAS its based statistical methods populations. As variation in targeted traits essential GWAS, review rise Subsequently, application plants corresponding discussed. address current knowledge analysis emerging

Язык: Английский

Процитировано

131

Systematic Multi-Omics Integration (MOI) Approach in Plant Systems Biology DOI Creative Commons
Ili Nadhirah Jamil,

Juwairiah Remali,

Kamalrul Azlan Azizan

и другие.

Frontiers in Plant Science, Год журнала: 2020, Номер 11

Опубликована: Июнь 26, 2020

Across all facets of biology, the rapid progress in high-throughput data generation has enabled us to perform multi-omics systems biology research. Transcriptomics, proteomics, and metabolomics can answer targeted biological questions regarding expression transcripts, proteins, metabolites, independently, but a systematic integration (MOI) comprehensively assimilate, annotate, model these large sets. Previous MOI studies reviews have detailed its usage practicality on various organisms including human, animals, microbes, plants. Plants are especially challenging due poorly annotated genomes, multi-organelles, diverse secondary metabolites. Hence, constructive methodological guidelines how for plants needed, particularly researchers newly embarking this topic. In review, we thoroughly classify verify workflows ensure successful omics with accurate representation. We also propose three levels MOI, namely element-based (level 1), pathway-based 2), mathematical-based 3). These described relation recent publications tools, highlight their function. The drawbacks limitations discussed future improvement toward more amenable strategies plant biology.

Язык: Английский

Процитировано

128

Metabolite signatures of diverse Camellia sinensis tea populations DOI Creative Commons
Xiaomin Yu, Jiajing Xiao, Si Chen

и другие.

Nature Communications, Год журнала: 2020, Номер 11(1)

Опубликована: Ноя. 4, 2020

Abstract The tea plant ( Camellia sinensis ) presents an excellent system to study evolution and diversification of the numerous classes, types variable contents specialized metabolites. Here, we investigate relationship among C. phylogenetic groups metabolites using transcriptomic metabolomic data on fresh leaves collected from 136 representative accessions in China. We obtain 925,854 high-quality single-nucleotide polymorphisms (SNPs) enabling refined grouping sampled into five major clades. Untargeted analyses detect 129 199 annotated that are differentially accumulated different positive negative ionization modes, respectively. Each group contains signature In particular, CSA featured with high accumulation diverse classes flavonoid compounds, such as flavanols, flavonol mono-/di-glycosides, proanthocyanidin dimers, phenolic acids. Our results provide insights genetic metabolite diversity useful for accelerated breeding.

Язык: Английский

Процитировано

126

Metabolite‐based genome‐wide association study enables dissection of the flavonoid decoration pathway of wheat kernels DOI Creative Commons
Jie Chen, Xin Hu,

Taotao Shi

и другие.

Plant Biotechnology Journal, Год журнала: 2020, Номер 18(8), С. 1722 - 1735

Опубликована: Янв. 13, 2020

Summary The marriage of metabolomic approaches with genetic design has proven a powerful tool in dissecting diversity the metabolome and additionally enhanced our understanding complex traits. That said, such studies have rarely been carried out wheat. In this study, we detected 805 metabolites from wheat kernels profiled their relative contents among 182 accessions, conducting metabolite‐based genome‐wide association study (mGWAS) utilizing 14 646 previously described polymorphic SNP markers. A total 1098 mGWAS associations were large effects, within which 26 candidate genes tentatively designated for 42 loci. Enzymatic assay two candidates indicated they could catalyse glucosylation subsequent malonylation various flavonoids thereby major flavonoid decoration pathway kernel was dissected. Moreover, numerous high‐confidence associated metabolite provided, as well more subdivided networks are yet to be explored data. These combined efforts presented first step towards realizing metabolomics‐associated breeding

Язык: Английский

Процитировано

121

Lipidomic studies of membrane glycerolipids in plant leaves under heat stress DOI
Yasuhiro Higashi, Kazuki Saito

Progress in Lipid Research, Год журнала: 2019, Номер 75, С. 100990 - 100990

Опубликована: Июль 1, 2019

Язык: Английский

Процитировано

112

Specialized phenolic compounds in seeds: structures, functions, and regulations DOI
Massimiliano Corso, François Perreau, Grégory Mouille

и другие.

Plant Science, Год журнала: 2020, Номер 296, С. 110471 - 110471

Опубликована: Март 19, 2020

Язык: Английский

Процитировано

103

Metabolomics and genomics in natural products research: complementary tools for targeting new chemical entities DOI
Lindsay K. Caesar, Rana Montaser, Nancy P. Keller

и другие.

Natural Product Reports, Год журнала: 2021, Номер 38(11), С. 2041 - 2065

Опубликована: Янв. 1, 2021

Here we provide a comprehensive guide for studying natural product biosynthesis using genomics, metabolomics, and their integrated datasets. We emphasize strategies critical outlook on remaining challenges in the field.

Язык: Английский

Процитировано

94

Endophytic fungi residing in medicinal plants have the ability to produce the same or similar pharmacologically active secondary metabolites as their hosts DOI Creative Commons
Anastasia Venieraki,

Maria Dimou,

Panagiotis Katinakis

и другие.

Hellenic Plant Protection Journal, Год журнала: 2017, Номер 10(2), С. 51 - 66

Опубликована: Июль 18, 2017

Summary Medicinal plants have been used for thousands of years in folk medicines and still are their health benefits. In our days medicinal exploited the isolation plant-derived drugs as they very effective relatively less or no side effects. However, natural resources gradually exhausted access to plant bioactive compounds is challenged by low levels at which these products accumulate native plants. For instance, meet market demands 3 Kg per year vinca alkaloids, powerful anticancer drugs, 1.5×10 6 dry leaves required. this regard, review aims highlight fact that endophytic fungi residing capable biosynthesize pharmacologically active secondary metabolites similar identical those produced host plant. Furthermore, evolutionary origin genes involved metabolic pathways well approaches designed enhance production isolated also discussed.

Язык: Английский

Процитировано

89

Recent advances in cannabis biotechnology DOI
Mohsen Hesami, Marco Pepe, Milad Alizadeh

и другие.

Industrial Crops and Products, Год журнала: 2020, Номер 158, С. 113026 - 113026

Опубликована: Окт. 24, 2020

Язык: Английский

Процитировано

78