Editorial – Regulation of Metabolism Special Issue DOI Open Access
Alisdair R. Fernie, Lee Sweetlove

The Plant Journal, Год журнала: 2023, Номер 114(5), С. 999 - 1000

Опубликована: Май 30, 2023

There has been a resurgence of interest in plant metabolic systems driven by research projects aiming to re-engineer metabolism for improvement the efficiency and productivity crops. is also growing understanding more general importance signalling during development. While there have many reviews on crop aspects engineering, fundamentals regulation somewhat overlooked despite key advances multiple fronts. This TPJ special issue gathers 11 high-impact that cover all regulation, from gene expression, protein degradation, protein–protein interaction, redox processes allostery, as well responses specific nutrients cofactors. The contains developmental metabolism, cell type-specific specialised epigenome within between plants other organisms. Here we provide brief overview each review. Interaction emerged an important mechanism which may be brought about. review Lu et al. (2023) tackles metabolites, detailing how primary intermediates such S-adenosyl methionine, acetyl-CoA, alpha-ketoglutarate NAD+ are required substrates or cofactors chromatin modification. It provides insight into this, turn, controls cellular metabolism. As this thoroughly modern control growth. In doing so it sets scene beautifully rest issue. continues with three articles define our current role enzyme cofactors, effectors post-translational modifications regulation. first these, da Fonseca-Pereira explain several some were already defined epigenetic regulators, regulate They comprehensive physiological known participates. illustrate cofactor highlighting recent discoveries regarding broad range stress-related contexts. Similar allosteric long history. their article, Hartmann briefly describe history but place main focus discussing classical biochemical studies can best married post-genomic techniques study proteomics. choose eight pathways this. they chronicle allosterically regulated enzymes pathway defining novel identifying protein–metabolite interactions. complementary article Balparda extent regulatory impact modification process photosynthetic carbon assimilation. By focusing examples where empirical evidence functional changes associated modification, demonstrate only at beginning deciphering network. Another aspect spatiotemporal coupling sequential enzymes. Such dynamic enzyme–enzyme interactions studied almost 50 years plants. Over time particular placed assemblies metabolons perform substrate channelling. described Dahmani (2023), four unambiguously due difficulty obtaining supporting evidence. used suggest developments offer appropriate strategies identify metabolons. advocate field should aim become quantitative better integrated biology order deeper types cells present require matches fluxes demands those different types. review, Daloso difficulties information landscape distinct technical limitations ability rapidly purify one type another manner individual not perturbed. methods applied, namely isolation, situ microscopy silico modelling. Finally, discuss factors affect flux distribution detail augur future feature multicellular At whole level, long-standing question growth coordinated. Cai long-distance metabolite signals orchestrate differential patterns tissues. so, detailed inventory suggesting could found. knowledge engineer improved health resilience. development quiescence, division repressed reversible manner. actively monitored influenced environmental stimuli. Considine Foyer quiescence tuned energy, nutrient oxygen status sense transmit these signals. argue mitochondrial function intrinsic reactive species play orchestration quiescence. final collection engineering natural products, defence philosophical whether approach network perspective. Selma multigene including editing transcriptional approaches. technologies uncharacterised biosynthetic pathways, degradation mechanisms, interaction feedback synthesis routes inform attempts improve product synthesis. metabolites its defence. much focused volatile organic compounds context, Luo non-volatile insect herbivores. interplay nutritional core defensive noting ‘that feeding tends elicit evolutionarily conserved specialized whereas effect varies widely based interacting species’. vast gap perspective filled emergent technologies. end Lanier uses terpene case address fact rarely look simple linear when rather complex intertwined networks. For purpose, encompassing genomics transformative view indeed far advanced genome era reinforces fundamental genetic foundations laid last century.

Язык: Английский

Metabolomics of early blight (Alternaria solani) susceptible tomato (Solanum lycopersicum) unfolds key biomarker metabolites and involved metabolic pathways DOI Creative Commons
Dhananjaya P. Singh,

Sudarshan Maurya,

Suresh Reddy Yerasu

и другие.

Scientific Reports, Год журнала: 2023, Номер 13(1)

Опубликована: Ноя. 29, 2023

Abstract Tomato ( Solanum lycopersicum ) is among the most important commercial horticultural crops worldwide. The crop quality and production largely hampered due to fungal pathogen Alternaria solani causing necrotrophic foliage early blight disease. Crop plants usually respond biotic challenges with altered metabolic composition physiological perturbations. We have deciphered metabolite composition, modulated pathways identified biomarkers in A. -challenged susceptible tomato variety Kashi Aman using Liquid Chromatography-Mass Spectrometry (LC–MS) based metabolomics. Alteration feature of pathogen-challenged m/z 9405) non-challenged 9667) plant leaves including 8487 infection-exclusive 8742 non-infection exclusive features was observed. Functional annotation revealed putatively annotated metabolites pathway mapping indicated their enrichment pathways, biosynthesis secondary metabolites, ubiquinone terpenoid-quinones, brassinosteroids, steroids, terpenoids, phenylpropanoids, carotenoids, oxy/sphingolipids metabolism biotin porphyrin. PCA, multivariate PLS-DA OPLS-DA analysis showed sample discrimination. Significantly up regulated 481 down 548 were on fold change (threshold ≥ 2.0). model variable importance projection (VIP scores) FC threshold (> 2.0) 41 discriminant as sphingosine, fecosterol, melatonin, serotonin, glucose 6-phosphate, zeatin, dihydrozeatin zeatin-β- d -glucoside. Similarly, 23 included histidinol, 4-aminobutyraldehyde, propanoate, tyramine linalool. Melatonin serotonin two indoleamines being reported for first time response pathogen. Receiver operating characteristic (ROC)-based biomarker apigenin-7-glucoside, uridine, adenosyl-homocysteine, cGMP, tyrosine, pantothenic acid, riboflavin (as regulated) adenosine, homocyctine azmaline biomarkers. These results could aid development metabolite-quantitative trait loci (mQTL). Furthermore, stress-induced biosynthetic may be potential targets modifications through breeding programs or genetic engineering improving performance fields.

Язык: Английский

Процитировано

13

Integrated Physiological, Transcriptomic and Metabolomic Analyses of the Response of Rice to Aniline Toxicity DOI Open Access
Jingjing Wang, Ruixin Wang, Lei Liu

и другие.

International Journal of Molecular Sciences, Год журнала: 2025, Номер 26(2), С. 582 - 582

Опубликована: Янв. 11, 2025

The accumulation of aniline in the natural environment poses a potential threat to crops, and thus, investigating effects on plants holds practical implications for agricultural engineering its affiliated industries. This study combined physiological, transcriptomic, metabolomic methods investigate growth status molecular-level response mechanisms rice under stress from varying concentrations aniline. At concentration 1 mg/L, exhibited slight growth-promoting effect rice. However, higher significantly inhibited even caused notable damage seedlings. Physiological data indicated that stress, membrane underwent oxidative damage. Furthermore, when was excessively high, cells suffered severe damage, resulting inhibition antioxidant enzyme synthesis activity. Transcriptomic analyses phenylpropanoid biosynthesis pathway became quite active with alterations various enzymes metabolites related lignin synthesis. In addition pathway, amino acid metabolism, lipid purine metabolism were also critical pathways rice’s stress. Significant changes occurred expression levels multiple genes (e.g., PRX, C4H, GST, ilvH, among others) associated functions such as activity, remodeling, signal transduction, nitrogen supply. Similarly, observed (for instance, glutamic acid, phosphatidic phosphatidylglycerol, asparagine, etc.) these functions. Our research findings have unveiled compounds phenylpropanoids acids assisting cope A more in-depth detailed exploration specific by which substances function process plant resistance utilizing carbon-14 isotope tracing monitor metabolic within plants) will facilitate cultivation varieties are resistant undoubtedly benefit activities ensuring food production quality aniline-contaminated environments, well remediation aniline-polluted environments.

Язык: Английский

Процитировано

0

Non-canonical plant metabolism DOI
Lee Sweetlove, R. George Ratcliffe, Alisdair R. Fernie

и другие.

Nature Plants, Год журнала: 2025, Номер unknown

Опубликована: Март 31, 2025

Язык: Английский

Процитировано

0

Transcriptomic and metabolomic analysis of fludioxonil-induced stress response and resistance in the poplar leaf blight fungus (Alternaria alternata) DOI
M. Hayat, Zhanbin Wang, Xiaojing Liu

и другие.

Journal of Forestry Research, Год журнала: 2025, Номер 36(1)

Опубликована: Май 4, 2025

Язык: Английский

Процитировано

0

Integrative phenomics, metabolomics, and flavoromics reveal key quality indicators during the formation of flavor and bioactive compounds in Alpinia hainanensis (Zingiberaceae) fruit DOI
Xiaolu Chen, Tian Qin, Zhen‐Xia Chen

и другие.

Food Chemistry, Год журнала: 2025, Номер 486, С. 144602 - 144602

Опубликована: Май 8, 2025

Язык: Английский

Процитировано

0

The Main Functions of Plastids DOI
Marcel Kuntz, Laura Dimnet,

Sara Pullara

и другие.

Methods in molecular biology, Год журнала: 2024, Номер unknown, С. 89 - 106

Опубликована: Янв. 1, 2024

Язык: Английский

Процитировано

2

Exploring the Impact of Ampelopsis Grossedentata Flavonoids on Growth Performance, Ruminal Microbiota, and Plasma Physiology and Biochemistry of Kids DOI Creative Commons
Junhong Zhu,

Xingneng Liu,

Ying Lu

и другие.

Animals, Год журнала: 2023, Номер 13(15), С. 2454 - 2454

Опубликована: Июль 29, 2023

This study was conducted to evaluate the influences of supplementing Ampelopsis grossedentata flavonoids (AGF) on rumen bacterial microbiome, plasma physiology and biochemistry, growth performance goats. Twenty-four Nubian kids were randomly allocated three dietary treatments: control (CON, basal diet), 1.0 g/kg AGF treatment (AGF), 12.5 mg/kg monensin (MN). trial consisted 10 days for adaptation 90 data sample collection. The results reveal that Bacteroidetes, Firmicutes, Proteobacteria are dominant phyla in kids’ rumen. Compared with CON group, alpha diversity MN groups significantly increased (p < 0.01). Beta-diversity shows microbial composition is more similar groups. LEfSe analysis Prevotella_1 group higher than those group. high-density lipoprotein cholesterol glucose levels 0.05), whereas low-density cholesterol, glutamic-pyruvic transaminase, alkaline phosphatase exhibited opposite trend. average daily gains increased, while feed-to-gain ratios decreased 0.05). suggest adding diet improves has important implications studying juvenile livestock improving economic benefits.

Язык: Английский

Процитировано

5

Emergence of Photomodulated Protometabolism by Short Peptide-Based Assemblies DOI
Antara Reja, Sumit Pal,

Kishalay Mahato

и другие.

Journal of the American Chemical Society, Год журнала: 2023, Номер 145(38), С. 21114 - 21121

Опубликована: Сен. 14, 2023

In the early Earth, rudimentary enzymes must have utilized available light energy source to modulate protometabolic processes. Herein, we report light-responsive C-C bond manipulation via short peptide-based assemblies bound photosensitive molecular cofactor (azo-based photoswitch) where of regulated binding sites which subsequently modulated retro-aldolase activity. presence a continual high-energy photons, temporal realization catalytically more proficient state could be achieved under nonequilibrium conditions. Further, hydrophobic surface peptide facilitated an orthogonal catalyst that showed augmented activity (promiscuous hydrolytic activity) upon binding. This latent was for in situ generation light-sensitive activity, thus creating reaction network.

Язык: Английский

Процитировано

4

How metabolism and development are intertwined in space and time DOI Creative Commons
Camila Caldana, Fernando Carrari, Alisdair R. Fernie

и другие.

The Plant Journal, Год журнала: 2023, Номер 116(2), С. 347 - 359

Опубликована: Июль 12, 2023

Developmental transitions, occurring throughout the life cycle of plants, require precise regulation metabolic processes to generate energy and resources necessary for committed growth processes. In parallel, establishment new cells, tissues, even organs, alongside their differentiation provoke profound changes in metabolism. It is increasingly being recognized that there a certain degree feedback between components products pathways developmental regulators. The generation large-scale metabolomics datasets during combination with molecular genetic approaches has helped further our knowledge on functional importance development. this perspective article, we provide insights into studies elucidate interactions metabolism development at temporal spatial scales. We additionally discuss how influences cell growth-related also highlight intermediates function as signaling molecules direct plant response changing internal external conditions.

Язык: Английский

Процитировано

3

Exploring the Rice Root Metabolome to Unveil the Key Biomarkers Under the Stress of Meloidogyne Graminicola DOI
Vedant Gautam,

Ravi Nagar,

Pradeep Barai

и другие.

Опубликована: Янв. 1, 2024

Download This Paper Open PDF in Browser Add to My Library Share: Permalink Using these links will ensure access this page indefinitely Copy URL DOI

Язык: Английский

Процитировано

0