The
influence
of
geologic
and
Pleistocene
glacial
cycles
might
result
in
morphological
genetic
complex
scenarios
the
biota
Mesoamerican
region.We
tested
whether
berylline,
blue-tailed
steely-blue
hummingbirds,
Amazilia
beryllina,
cyanura
saucerottei,
show
evidence
historical
or
current
introgression
as
their
plumage
colour
variation
suggest.We
also
analysed
role
past
present
climatic
events
promoting
species
diversification.We
collected
mitochondrial
DNA
(mtDNA)
sequence
data
microsatellite
loci
scores
for
populations
throughout
range
three
species,
well
ecological
data.Haplotype
network,
Bayesian
phylogenetic
divergence
time
inference,
demography,
palaeodistribution
modelling,
niche
tests
were
used
to
reconstruct
evolutionary
history
this
complex.An
isolation-withmigration
coalescent
model
assignment
analysis
assessed
determine
admixture.mtDNA
haplotypes
geographically
unstructured,
with
from
disparate
areas
interdispersed
on
a
shallow
tree
an
unresolved
haplotype
network.Assignment
nuclear
genome
(nuDNA)
supported
groups
signs
admixture,
corresponding
to:
(1)
A.
beryllina
located
west
Isthmus
Tehuantepec,
(2)
between
Tehuantepec
Nicaraguan
Depression
(Nuclear
Central
America),
(3)
saucerottei
southeast
Depression.Gene
flow
estimates,
demographic
patterns
suggest
mediated
by
Quaternary
fluctuations.High
levels
gene
indicated
mtDNA
asymmetrical
isolation-with-migration,
whereas
analyses
found
clusters
distributions
isolation
admixture.Historical
migration
genetically
distinct
estimated
using
microsatellites
higher
than
contemporary
migration.These
results
support
scenario
secondary
contact
during
periods
strongly
imply
that
high
structure
currently
observed
are
consequence
limited
Biological Journal of the Linnean Society,
Год журнала:
2018,
Номер
126(1), С. 1 - 15
Опубликована: Сен. 22, 2018
The
highlands
of
Mesoamerica
harbour
some
the
highest
biodiversity
in
world,
especially
cloud
forests,
but
landscape
drivers
this
diversification
are
not
well
known.
Taxonomy
region
has
been
challenging
owing
to
a
lack
consensus
about
how
test
species
limits.
We
apply
integrative
taxonomy
an
emblematic
Mesoamerican
unicolored
jay
(Aphelocoma
unicolor).
assess
divergence
along
three
complementary
axes
(genetics,
phenotype
and
ecological
niche),
finding
evidence
for
differentiation
among
five
lineages,
currently
described
as
subspecies,
isolated
forest
patches.
DNA
suggests
that
these
lineages
have
long
histories
divergence.
Multivariate
analysis
phenotype,
with
objective
method
detecting
phenotypic
clusters,
suggest
at
least
four
diagnosable.
There
was
also
pattern
increasing
through
time.
observed
is
comparable
other
species-level
divergences
genus,
arguing
elevation
two,
many
four,
within
A.
unicolor
rank.
According
our
time
tree,
patches
became
starting
Pliocene
continuing
into
Pleistocene,
suggesting
glacial
cycles
main
speciation.
Molecular Ecology,
Год журнала:
2020,
Номер
29(18), С. 3543 - 3559
Опубликована: Июнь 5, 2020
Abstract
Mitonuclear
discordance
is
a
frequently
encountered
pattern
in
phylogeographic
studies
and
occurs
when
mitochondrial
nuclear
DNA
display
conflicting
signals.
Discordance
among
these
genetic
markers
can
be
caused
by
several
factors
including
confounded
taxonomies,
gene
flow,
incomplete
lineage
sorting.
In
this
study,
we
present
strong
case
of
mitonuclear
species
complex
toads
(Bufonidae:
Incilius
coccifer
complex)
found
the
Chortís
Block
Central
America.
To
determine
cause
complex,
used
spatially
explicit
data
to
test
limits
relationships,
characterize
demographic
history,
quantify
flow.
We
extensive
three
recognized
within
group,
especially
populations
Highlands
Honduras.
Our
reveal
introgression
that
was
most
probably
driven
cyclical
range
expansions
due
climatic
fluctuations.
Though
determined
occurred
genome,
our
suggest
it
not
key
factor
driving
entire
complex.
Rather,
lack
discernible
geographic
between
DNA,
as
well
relatively
recent
divergence
time
concluded
has
been
study
provides
framework
sources
highlights
importance
using
multiple
marker
types
boundaries
cryptic
species.
The American Naturalist,
Год журнала:
2021,
Номер
198(3), С. E68 - E79
Опубликована: Май 21, 2021
AbstractContinental
mountain
areas
cover
<15%
of
global
land
surface,
yet
these
regions
concentrate
>80%
terrestrial
diversity.
One
prominent
hypothesis
to
explain
this
pattern
proposes
that
high
diversities
could
be
explained
by
higher
diversification
rates
in
topographic
complexity
(HTC).
While
speciation
mountains
has
been
detected
for
particular
clades
and
regions,
the
extent
which
lineages
experience
faster
remains
unknown.
Here
we
addressed
issue
using
amphibians
as
a
model
system
(>7,000
species),
found
families
showing
contain
proportion
species
distributed
mountains.
Moreover,
inhabiting
HTC
speciate
than
occupying
are
topographically
less
complex.
When
comparing
across
identified
same
five
biogeographical
realms
where
associated
with
levels
complex
topography.
Low-magnitude
differences
between
some
low
topographies
suggest
diversity
is
also
affected
extinction
and/or
colonization
rates.
Nevertheless,
our
results
bolster
importance
engines
at
different
geographical
scales
highlight
their
conservation
biodiversity.
PeerJ,
Год журнала:
2015,
Номер
4, С. e1556 - e1556
Опубликована: Янв. 12, 2015
The
influence
of
geologic
and
Pleistocene
glacial
cycles
might
result
in
morphological
genetic
complex
scenarios
the
biota
Mesoamerican
region.
We
tested
whether
berylline,
blue-tailed
steely-blue
hummingbirds,
Amazilia
beryllina
,
cyanura
saucerottei
show
evidence
historical
or
current
introgression
as
their
plumage
colour
variation
suggest.
also
analysed
role
past
present
climatic
events
promoting
species
diversification.
collected
mitochondrial
DNA
(mtDNA)
sequence
data
microsatellite
loci
scores
for
populations
throughout
range
three
species,
well
ecological
data.
Haplotype
network,
Bayesian
phylogenetic
divergence
time
inference,
demography,
palaeodistribution
modelling,
niche
tests
were
used
to
reconstruct
evolutionary
history
this
complex.
An
isolation-with-migration
coalescent
model
assignment
analysis
assessed
determine
admixture.
mtDNA
haplotypes
geographically
unstructured,
with
from
disparate
areas
interdispersed
on
a
shallow
tree
an
unresolved
haplotype
network.
Assignment
nuclear
genome
(nuDNA)
supported
groups
signs
admixture,
corresponding
to:
(1)
A.
located
west
Isthmus
Tehuantepec;
(2)
between
Tehuantepec
Nicaraguan
Depression
(Nuclear
Central
America);
(3)
southeast
Depression.
Gene
flow
estimates,
demographic
patterns
suggest
mediated
by
Quaternary
fluctuations.
High
levels
gene
indicated
asymmetrical
isolation-with-migration,
whereas
analyses
found
clusters
distributions
isolation
Historical
migration
genetically
distinct
estimated
using
microsatellites
higher
than
contemporary
migration.
These
results
support
scenario
secondary
contact
during
periods
strongly
imply
that
high
structure
currently
observed
are
consequence
limited
dispersal
these
hummingbirds
across
isthmus
depression
barriers.
Abstract
Roads
are
vital
for
the
economic
development
of
countries
but
they
pose
major
problems
wildlife.
The
road
network
in
Central
America
is
expanding,
yet
information
about
wildlife–vehicle
collisions
scarce.
We
compiled
data
on
vertebrate
with
vehicles
Guatemala,
El
Salvador
and
Honduras,
from
projects
created
citizen
science
platform
iNaturalist,
to
provide
first
assessment
how
these
species
affected
by
roads
northern
America.
Our
gathered
670
wildlife
roadkill
records
that
had
been
logged
95
users
across
three
countries,
122
identified.
Mammals
reptiles
represented
44
30%
records,
respectively,
opossums
Didelphis
spp.
Philander
vossi
,
common
boa
Boa
constrictor
neotropical
whip
snake
Masticophis
mentovarius
being
most
frequently
reported
(112,
28,
43
23
respectively).
One
recorded
categorized
as
globally
Endangered
IUCN
Red
List,
two
Vulnerable,
four
Near
Threatened
have
not
evaluated.
Forty-six
listed
or
nationally.
This
study
which
both
members
public
specialists
contributed,
underscoring
value
engagement
science.
urge
further
impacts
this
region
using
standardized
methods
identify
rates
hotspots,
implementation
mitigation
measures
existing
planned
region.
Communications Biology,
Год журнала:
2025,
Номер
8(1)
Опубликована: Май 28, 2025
Abstract
Speciation
can
increase
regional
species
richness,
however,
our
knowledge
of
how
and
why
speciation
rates
vary
across
space
is
still
incomplete.
Using
comprehensive
information
on
distributions
their
phylogenetic
relationships,
we
describe
the
global
spatial
patterns
variation
in
amphibian
explore
ecological
determinants.
We
find
that
overall
mean
amphibians
with
latitude.
This
pattern
largely
determined
by
anurans,
most
diverse
order.
Salamanders,
nevertheless,
speciate
faster
tropics,
whereas
caecilians
did
not
exhibit
any
relationship
Despite
inverse
latitudinal
trend
amphibians,
tip-level
maximum
are
necessarily
restricted
to
higher
latitudes
be
found
different
regions
globe.
Among
bioregions,
associated
high
past
climatic
velocity
topographic
complexity,
both
factors
potentially
promoting
isolation,
an
important
primer
for
speciation.
Our
results
suggest
emerging
likely
driven
combination
a
few
rapidly
speciating
clades
distributed
numerous
lower
showing
heterogeneous
that,
when
averaged,
pull
down
estimations
areas
where
they
occur.
PeerJ,
Год журнала:
2019,
Номер
7, С. e6115 - e6115
Опубликована: Янв. 3, 2019
The
complex
geological
history
of
Central
America
has
been
useful
for
understanding
the
processes
influencing
distribution
and
diversity
multiple
groups
organisms.
Anurans
are
an
excellent
choice
such
studies
because
they
typically
exhibit
site
fidelity
reduced
movement.
objective
this
work
was
to
identify
impact
recognized
geographic
barriers
on
genetic
structure,
phylogeographic
patterns
divergence
times
a
wide-ranging
amphibian
species,
Hyalinobatrachium
fleischmanni.
We
amplified
three
mitochondrial
regions,
two
coding
(COI
ND1)
one
ribosomal
(16S),
in
samples
collected
from
coasts
Veracruz
Guerrero
Mexico
humid
forests
Chocó
Ecuador.
examined
biogeographic
species
through
spatial
clustering
analyses
(Geneland
sPCA),
Bayesian
maximum
likelihood
reconstructions,
spatiotemporal
diffusion
analysis.
Our
data
suggest
American
origin
H.
fleischmanni
posterior
independent
dispersals
towards
North
South
regions.
first
clade
comprises
individuals
Colombia,
Ecuador,
Panama
sister
tatayoi;
shows
little
despite
presence
Andes
mountain
range
long
distances
between
sampling
sites.
second
consists
Costa
Rica,
Nicaragua,
eastern
Honduras
with
no
apparent
structure.
third
includes
western
Honduras,
Guatemala,
displays
deep
population
Herein,
we
synthesize
known
areas
that
act
as
glassfrog
dispersal
demonstrated
their
effect
differentiating
into
markedly
isolated
clades.
observed
structure
is
associated
initial
event
followed
by
vicariance
likely
occurred
during
Pliocene.
southern
characterized
very
recent
expansion,
related
sea-level
climatic
oscillations
Pleistocene,
whereas
northern
probably
driven
Isthmus
Tehuantepec
isolation
Motagua-Polochic-Jocotán
fault
system
Mexican
highlands.
Journal of Biogeography,
Год журнала:
2021,
Номер
48(8), С. 2037 - 2052
Опубликована: Май 13, 2021
Abstract
Aim
The
fauna
of
Mesoamerica
is
extraordinarily
species
rich
and
exhibits
a
high
degree
local,
regional
high‐elevation
endemism.
Traditionally,
this
area
has
been
seen
as
transition
zone
between
the
Nearctic
Neotropical
regions;
in
contrast,
new
data
suggest
that
centre
origin
taxonomic
diversification.
For
example,
diversity
genera
Passalidae
concentrated
montane
environments
there
are
many
locally
endemic
taxa;
thus,
suggested
diversification
for
group.
However,
hypothesis
not
formally
tested.
Location
New
World
tropics,
with
an
emphasis
on
Mesoamerica.
Taxon
Coleoptera,
(tribes
Passalini
Proculini)
Methods
We
studied
timing
geographic
patterns
Passalidae.
used
DNA
sequence
from
3
genes
(CAD,
Wingless,
28S)
93
Passalidae,
along
information
fossil
record,
to
generate
time‐calibrated
phylogeny
Additionally,
we
performed
Ancestral
Area
Estimation
State
Reconstruction
altitudinal
distribution
niche.
Results
divergence
time
analyses
recovered
much
older
estimated
events
than
previously
proposed.
origins
late
Jurassic
split
Proculini
during
mid‐Cretaceous.
Moreover,
observed
congruence
clade
major
paleogeographical
events;
crown
uplift
emergence
sea.
Main
conclusions
Orogenic
throughout
Paleogene
Neogene
played
role
Nuclear
Southern
centres
Proculini.
Biotropica,
Год журнала:
2021,
Номер
54(1), С. 157 - 169
Опубликована: Ноя. 21, 2021
Abstract
Emergent
infectious
disease
caused
by
the
fungal
pathogens
Batrachochytrium
dendrobatidis
(
Bd
)
and
salamandrivorans
Bsal
represents
one
of
major
causes
biodiversity
loss
in
amphibians.
While
has
affected
amphibians
worldwide,
remains
restricted
to
Asia
Europe,
but
also
could
be
a
threat
for
salamanders
Western
hemisphere,
including
320
bolitoglossine
species
described.
Here,
we
predict
suitable
areas
Neotropics
assess
its
potential
impact
on
diversity.
For
this,
determined
geographic
patterns
taxonomic,
phylogenetic,
functional
diversity
bolitoglossines
modeled
distribution
Neotropics.
We
identified
which
regions
at
risk
from
an
eventual
introduction
region,
quantified
degree
overlap
between
high
conditions
pathogen,
considered
IUCN
Red
List
status,
range
size.
found
that
are
concentrated
Trans‐Mexican
Volcanic
Belt,
Sierra
Madre
Oriental,
southern
portion
del
Sur
mountains
Oaxaca
México,
as
well
Chiapan‐Guatemalan
highlands,
Cordilleras
Costa
Rica
Panama.
Alarmingly,
over
75%
ranges
more
threatened
.
Given
unknown
vulnerability
these
species,
strongly
recommend
measures
avoid
continent.
Spanish
is
available
with
online
material.