Insights Gained from RNA Editing Targeted by the CRISPR-Cas13 Family DOI Open Access
Li Liu, De‐Sheng Pei

International Journal of Molecular Sciences, Год журнала: 2022, Номер 23(19), С. 11400 - 11400

Опубликована: Сен. 27, 2022

Clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein (Cas) systems, especially type II (Cas9) have been widely developed for DNA targeting and formed a set of mature precision gene-editing systems. However, the basic research application CRISPR-Cas system in RNA is still its early stages. Recently, discovery CRISPR-Cas13 VI has provided possibility expansion technology, which broad prospects. Most Cas13 effectors dinuclease activity that catalyzes pre-crRNA into crRNA produces strong cleavage activity. can specifically recognize targeted fragments to activate Cas13/crRNA complex collateral To date, Cas13X smallest effector family, with 775 amino acids, promising platform due lack protospacer flanking sequence (PFS) restrictions, ease packaging, absence permanent damage. This study highlighted latest progress editing by discussed research, nucleic acid diagnosis, tracking, genetic disease treatment. Furthermore, we clarified structure family their molecular mechanism, proposed future vision family.

Язык: Английский

High-fidelity Cas13 variants for targeted RNA degradation with minimal collateral effects DOI
Huawei Tong, Jia Huang, Qingquan Xiao

и другие.

Nature Biotechnology, Год журнала: 2022, Номер 41(1), С. 108 - 119

Опубликована: Авг. 11, 2022

Язык: Английский

Процитировано

132

Assessing and advancing the safety of CRISPR-Cas tools: from DNA to RNA editing DOI Creative Commons
Jianli Tao, Daniel E. Bauer, Roberto Chiarle

и другие.

Nature Communications, Год журнала: 2023, Номер 14(1)

Опубликована: Янв. 13, 2023

CRISPR-Cas gene editing has revolutionized experimental molecular biology over the past decade and holds great promise for treatment of human genetic diseases. Here we review development CRISPR-Cas9/Cas12/Cas13 nucleases, DNA base editors, prime RNA focusing on assessment improvement their precision safety, pushing limit specificity efficiency. We summarize capabilities limitations each CRISPR tool from to editing, highlight opportunities future improvements applications in basic research, as well therapeutic clinical considerations use patients.

Язык: Английский

Процитировано

100

CRISPR technologies for genome, epigenome and transcriptome editing DOI
Lukas Villiger,

Julia Joung,

Luke W. Koblan

и другие.

Nature Reviews Molecular Cell Biology, Год журнала: 2024, Номер 25(6), С. 464 - 487

Опубликована: Фев. 2, 2024

Язык: Английский

Процитировано

67

Prediction of on-target and off-target activity of CRISPR–Cas13d guide RNAs using deep learning DOI
Hans‐Hermann Wessels,

Andrew Stirn,

Alejandro Méndez‐Mancilla

и другие.

Nature Biotechnology, Год журнала: 2023, Номер 42(4), С. 628 - 637

Опубликована: Июль 3, 2023

Язык: Английский

Процитировано

56

The collateral activity of RfxCas13d can induce lethality in a RfxCas13d knock-in mouse model DOI Creative Commons
Yunfei Li, Junjie Xu, Xuefei Guo

и другие.

Genome biology, Год журнала: 2023, Номер 24(1)

Опубликована: Фев. 1, 2023

The CRISPR-Cas13 system is an RNA-guided RNA-targeting and has been widely used in transcriptome engineering with potentially important clinical applications. However, it still controversial whether Cas13 exhibits collateral activity mammalian cells.

Язык: Английский

Процитировано

48

Gene therapy for CNS disorders: modalities, delivery and translational challenges DOI
Jingjing Gao,

Swetharajan Gunasekar,

Ziting Xia

и другие.

Nature reviews. Neuroscience, Год журнала: 2024, Номер 25(8), С. 553 - 572

Опубликована: Июнь 19, 2024

Язык: Английский

Процитировано

19

A high-fidelity CRISPR-Cas13 system improves abnormalities associated with C9ORF72-linked ALS/FTD DOI Creative Commons
Tristan X. McCallister, Colin K.W. Lim,

Madhurima Singh

и другие.

Nature Communications, Год журнала: 2025, Номер 16(1)

Опубликована: Янв. 8, 2025

Abstract An abnormal expansion of a GGGGCC (G 4 C 2 ) hexanucleotide repeat in the C9ORF72 gene is most common genetic cause amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), two debilitating neurodegenerative disorders driven part by gain-of-function mechanisms involving transcribed forms expansion. By utilizing Cas13 variant with reduced collateral effects, we develop here high-fidelity RNA-targeting CRISPR-based system for C9ORF72-linked ALS/FTD. When delivered to brain transgenic rodent model, this Cas13-based platform curbed expression G repeat-containing RNA without affecting normal levels, which turn decreased formation foci, production dipeptide protein, reversed transcriptional deficits. This possessed improved transcriptome-wide specificity compared its native form mediated targeting motor neuron-like cells derived from patient ALS. These results lay foundation implementation CRISPR technologies

Язык: Английский

Процитировано

3

Dual-targeting CRISPR-CasRx reduces C9orf72 ALS/FTD sense and antisense repeat RNAs in vitro and in vivo DOI Creative Commons
Liam Kempthorne, Deniz Vaizoglu, Alexander J. Cammack

и другие.

Nature Communications, Год журнала: 2025, Номер 16(1)

Опубликована: Янв. 8, 2025

Abstract The most common genetic cause of frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS) is an intronic G 4 C 2 repeat expansion in C9orf72 . repeats undergo bidirectional transcription to produce sense antisense RNA species, which are translated into dipeptide proteins (DPRs). As toxicity has been associated with both repeat-derived DPRs, targeting strands may provide the effective therapeutic strategy. CRISPR-Cas13 systems mature their own guide arrays, allowing multiple species from a single construct. We show CRISPR-Cas13d variant CasRx effectively reduces overexpressed transcripts DPRs HEK cells. In patient-derived iPSC-neuron lines, CRISPR-CasRx endogenous RNAs protects against glutamate-induced excitotoxicity. AAV delivery two distinct mouse models significantly reduced repeat-containing transcripts. This highlights potential RNA-targeting CRISPR as therapeutics for ALS/FTD.

Язык: Английский

Процитировано

2

Advanced Delivery Systems for Gene Editing: A Comprehensive Review from the GenE-HumDi COST Action Working group DOI Creative Commons
Alessia Cavazza, Francisco J Molina-Estevez, Álvaro Plaza Reyes

и другие.

Molecular Therapy — Nucleic Acids, Год журнала: 2025, Номер 36(1), С. 102457 - 102457

Опубликована: Янв. 18, 2025

Язык: Английский

Процитировано

2

Variability in SOD1-associated amyotrophic lateral sclerosis: geographic patterns, clinical heterogeneity, molecular alterations, and therapeutic implications DOI Creative Commons
Miaodan Huang, Yong Liu, Xiaoli Yao

и другие.

Translational Neurodegeneration, Год журнала: 2024, Номер 13(1)

Опубликована: Май 29, 2024

Abstract Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease characterized by progressive loss of motor neurons, resulting in global health burden and limited post-diagnosis life expectancy. Although primarily sporadic, familial ALS (fALS) cases suggest genetic basis. This review focuses on SOD1 , the first gene found to be associated with fALS, which has been more recently confirmed genome sequencing. While informative, databases such as ALSoD STRENGTH exhibit regional biases. Through systematic examination mutations from 1993 2023, we different geographic distributions clinical presentations. Even though variants are expressed at protein levels have half-lives dismutase activities, these alterations lead function that not consistently correlated severity. Gain toxic aggregates mutated emerged one key contributors ALS. Therapeutic interventions specifically targeting gain mutant SOD1, including RNA interference antibodies, show promise, but cure remains elusive. provides comprehensive perspective -associated describes molecular features complex landscape highlighting its importance determining diverse manifestations observed patients emphasizing need for personalized therapeutic strategies.

Язык: Английский

Процитировано

14