Data Science Guiding Analysis of Organic Reaction Mechanism and Prediction DOI Open Access
Giovanna S. Tâmega,

Mateus Oliveira Costa,

Ariel de Araujo Pereira

и другие.

The Chemical Record, Год журнала: 2024, Номер unknown

Опубликована: Ноя. 5, 2024

Abstract Advancements in synthetic organic chemistry are closely related to understanding substrate and catalyst reactivities through detailed mechanistic studies. Traditional investigations labor‐intensive rely on experimental kinetic, thermodynamic, spectroscopic data. Linear free energy relationships (LFERs), exemplified by Hammett relationships, have long facilitated reactivity prediction despite their inherent limitations when using constants or incorporating comprehensive Data‐driven modeling, which integrates cheminformatics with machine learning, offers powerful tools for predicting interpreting mechanisms effectively handling complex multiparameter strategies. This review explores selected examples of data‐driven strategies investigating reaction mechanisms. It highlights the evolution application computational descriptors inference.

Язык: Английский

Rapid Prediction of Conformationally-Dependent DFT-Level Descriptors using Graph Neural Networks for Carboxylic Acids and Alkyl Amines DOI Creative Commons
Brittany C. Haas, Melissa A. Hardy, Shree Sowndarya S. V.

и другие.

Digital Discovery, Год журнала: 2024, Номер unknown

Опубликована: Ноя. 28, 2024

Data-driven reaction discovery and development is a growing field that relies on the use of molecular descriptors to capture key information about substrates, ligands, targets. Broad adaptation this strategy hindered by associated computational cost descriptor calculation, especially when considering conformational flexibility. Descriptor libraries can be precomputed agnostic application reduce burden data-driven development. However, as one often applies these models evaluate novel hypothetical structures, it would ideal predict compounds on-the-fly. Herein, we report DFT-level for ensembles 8528 carboxylic acids 8172 alkyl amines towards goal. Employing 2D 3D graph neural network architectures trained culminated in predictive molecule-level descriptors, well bond- atom-level conserved reactive site (carboxylic acid or amine). The predictions were confirmed robust an external validation set medicinally-relevant amines. Additionally, retrospective study correlating rate amide coupling reactions demonstrated suitability predicted downstream applications. Ultimately, enable high-fidelity vast number potential greatly increasing accessibility

Язык: Английский

Процитировано

2

Recent Advances in Nonprecious Metal Catalysis DOI
David J. Bernhardson, Aran K. Hubbell, Robert A. Singer

и другие.

Organic Process Research & Development, Год журнала: 2024, Номер unknown

Опубликована: Дек. 7, 2024

As the field of nonprecious metal catalysis continues to expand, we pursue a review series covering selected transformations in this area over short time interval highlight practical advancements. We seek raise awareness both current art and need continue development toward broader applications earth-abundant metals chemical pharmaceutical industries.

Язык: Английский

Процитировано

1

Cross-Coupling Reactions with Nickel, Visible Light, and tert-Butylamine as a Bifunctional Additive DOI Creative Commons
Jonas Düker,

Maximilian Philipp,

Thomas Lentner

и другие.

ACS Catalysis, Год журнала: 2024, Номер 15(2), С. 817 - 827

Опубликована: Дек. 27, 2024

Transition metal catalysis is crucial for the synthesis of complex molecules, with ligands and bases playing a pivotal role in optimizing cross-coupling reactions. Despite advancements ligand design base selection, achieving effective synergy between these components remains challenging. We present here general approach to nickel-catalyzed photoredox reactions employing tert-butylamine as cost-effective bifunctional additive, acting ligand. This method proves C-O C-N bond-forming diverse array nucleophiles, including phenols, aliphatic alcohols, anilines, sulfonamides, sulfoximines, imines. Notably, protocol demonstrates significant applicability biomolecule derivatization facilitates sequential one-pot functionalizations. Spectroscopic investigations revealed robustness dynamic catalytic system, while elucidation structure-reactivity relationships demonstrated how computed molecular properties both nucleophile electrophile correlated reaction performance, providing foundation outcome prediction.

Язык: Английский

Процитировано

1

Navigating the Maize: Cyclic and conditional computational graphs for molecular simulation DOI Creative Commons
Thomas Löhr,

Michele Assante,

Michael Dodds

и другие.

Digital Discovery, Год журнала: 2024, Номер unknown

Опубликована: Янв. 1, 2024

Maize is a workflow manager for computational chemistry and simulation tasks, allowing conditional cyclical execution.

Язык: Английский

Процитировано

0

Data Science Guiding Analysis of Organic Reaction Mechanism and Prediction DOI Open Access
Giovanna S. Tâmega,

Mateus Oliveira Costa,

Ariel de Araujo Pereira

и другие.

The Chemical Record, Год журнала: 2024, Номер unknown

Опубликована: Ноя. 5, 2024

Abstract Advancements in synthetic organic chemistry are closely related to understanding substrate and catalyst reactivities through detailed mechanistic studies. Traditional investigations labor‐intensive rely on experimental kinetic, thermodynamic, spectroscopic data. Linear free energy relationships (LFERs), exemplified by Hammett relationships, have long facilitated reactivity prediction despite their inherent limitations when using constants or incorporating comprehensive Data‐driven modeling, which integrates cheminformatics with machine learning, offers powerful tools for predicting interpreting mechanisms effectively handling complex multiparameter strategies. This review explores selected examples of data‐driven strategies investigating reaction mechanisms. It highlights the evolution application computational descriptors inference.

Язык: Английский

Процитировано

0