The 3D Revolution in Cancer Discovery DOI Open Access
Linghua Wang, Mingyao Li, Tae Hyun Hwang

и другие.

Cancer Discovery, Год журнала: 2024, Номер 14(4), С. 625 - 629

Опубликована: Апрель 4, 2024

Summary: The transition from 2D to 3D spatial profiling marks a revolutionary era in cancer research, offering unprecedented potential enhance diagnosis and treatment. This commentary outlines the experimental computational advancements challenges molecular profiling, underscoring innovation needed imaging tools, software, artificial intelligence, machine learning overcome implementation hurdles harness full of analysis field.

Язык: Английский

Spatial genomics: mapping human steatotic liver disease DOI
Kylie P. Matchett, J Paris, Sarah A. Teichmann

и другие.

Nature Reviews Gastroenterology & Hepatology, Год журнала: 2024, Номер 21(9), С. 646 - 660

Опубликована: Апрель 23, 2024

Язык: Английский

Процитировано

12

Deep-Tissue Spatial Omics: Imaging Whole-Embryo Transcriptomics and Subcellular Structures at High Spatial Resolution DOI Creative Commons
Valentina Gandin, Jun Kim,

Liang-Zhong Yang

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Май 17, 2024

Summary The inherent limitations of fluorescence microscopy, notably the restricted number color channels, have long constrained comprehensive spatial analysis in biological specimens. Here, we introduce cycleHCR technology that leverages multicycle DNA barcoding and Hybridization Chain Reaction (HCR) to surpass conventional barrier. facilitates high-specificity, single-shot imaging per target for RNA protein species within thick specimens, mitigating molecular crowding issues encountered with other imaging-based omics techniques. We demonstrate whole-mount transcriptomics 254 genes an E6.5∼7.0 mouse embryo, achieving precise three-dimensional gene expression cell fate mapping across a specimen depth ∼ 310 µm. Utilizing expansion microscopy alongside cycleHCR, unveil complex network 10 subcellular structures primary embryonic fibroblasts. Furthermore, hippocampal slice, image 8 targets profile transcriptome 120 genes, uncovering gradients cell-type specific nuclear structural variances. provides unifying framework multiplex imaging, offering quantitative solution elucidating regulations deep tissue contexts research potentially diagnostic applications.

Язык: Английский

Процитировано

11

Advances in mass spectrometry imaging for plant metabolomics—Expanding the analytical toolbox DOI
Zhibin Yin, Wenjie Huang, Kun Li

и другие.

The Plant Journal, Год журнала: 2024, Номер 119(5), С. 2168 - 2180

Опубликована: Июль 11, 2024

SUMMARY Mass spectrometry imaging (MSI) has become increasingly popular in plant science due to its ability characterize complex chemical, spatial, and temporal aspects of metabolism. Over the past decade, as emerging unique features various MSI techniques have continued support new discoveries studies metabolism closely associated with function physiology, spatial metabolomics based on positioned it at forefront metabolic studies, providing opportunity for far higher resolution than was previously available. Despite these efforts, profound challenges levels resolution, sensitivity, quantitative ability, chemical confidence, isomer discrimination, multi‐omics integration, undoubtedly remain. In this Perspective, we provide a contemporary overview emergent widely used sciences, particular emphasis recent advances methodological breakthroughs. Having established detailed context MSI, outline both golden opportunities key currently facing metabolomics, presenting our vision how enormous potential technologies will contribute progress coming years.

Язык: Английский

Процитировано

11

FICTURE: scalable segmentation-free analysis of submicron-resolution spatial transcriptomics DOI
Yichen Si, ChangHee Lee, Yongha Hwang

и другие.

Nature Methods, Год журнала: 2024, Номер unknown

Опубликована: Сен. 12, 2024

Язык: Английский

Процитировано

11

The 3D Revolution in Cancer Discovery DOI Open Access
Linghua Wang, Mingyao Li, Tae Hyun Hwang

и другие.

Cancer Discovery, Год журнала: 2024, Номер 14(4), С. 625 - 629

Опубликована: Апрель 4, 2024

Summary: The transition from 2D to 3D spatial profiling marks a revolutionary era in cancer research, offering unprecedented potential enhance diagnosis and treatment. This commentary outlines the experimental computational advancements challenges molecular profiling, underscoring innovation needed imaging tools, software, artificial intelligence, machine learning overcome implementation hurdles harness full of analysis field.

Язык: Английский

Процитировано

10