Archaea
are
one
of
the
least-studied
members
gut-dwelling
autochthonous
microbiota.
Few
studies
have
reported
dominance
methanogens
in
archaeal
microbiome
(archaeome)
human
gut,
although
limited
information
regarding
diversity
and
abundance
other
phylotypes
is
available.We
surveyed
archaeome
faecal
samples
collected
from
897
East
Asian
subjects
living
South
Korea.
In
total,
42.47%
were
positive
for
colonisation;
these
subsequently
subjected
to
16S
rRNA
gene
deep
sequencing
real-time
quantitative
polymerase
chain
reaction-based
estimation.
The
mean
relative
was
10.24
±
4.58%
total
bacterial
abundance.
We
observed
extensive
colonisation
haloarchaea
(95.54%)
archaea-positive
samples,
with
9.63%
communities.
Haloarchaea
relatively
more
abundant
than
some
samples.
presence
also
verified
by
fluorescence
situ
hybridisation
analysis.
Owing
large
inter-individual
variations,
we
categorised
gut
into
four
enterotypes.The
study
demonstrated
that
indigenous,
responsive,
functional,
expanding
our
understanding
signature
individuals.
Video
Abstract.
npj Parkinson s Disease,
Год журнала:
2021,
Номер
7(1)
Опубликована: Март 10, 2021
The
gut
microbiota
is
emerging
as
an
important
modulator
of
neurodegenerative
diseases,
and
accumulating
evidence
has
linked
microbes
to
Parkinson's
disease
(PD)
symptomatology
pathophysiology.
PD
often
preceded
by
gastrointestinal
symptoms
alterations
the
enteric
nervous
system
accompany
disease.
Several
studies
have
analyzed
microbiome
in
PD,
but
a
consensus
on
features
PD-specific
missing.
Here,
we
conduct
meta-analysis
re-analyzing
ten
currently
available
16S
datasets
investigate
whether
common
patients
exist
across
cohorts.
We
found
significant
PD-associated
microbiome,
which
are
robust
study-specific
technical
heterogeneities,
although
differences
structure
between
controls
small.
Enrichment
genera
Lactobacillus,
Akkermansia,
Bifidobacterium
depletion
bacteria
belonging
Lachnospiraceae
family
Faecalibacterium
genus,
both
short-chain
fatty
acids
producers,
emerged
most
consistent
alterations.
This
dysbiosis
might
result
pro-inflammatory
status
could
be
recurrent
affecting
patients.
Abstract
The
human
upper
respiratory
tract
(URT)
offers
a
variety
of
niches
for
microbial
colonization.
Local
communities
are
shaped
by
the
different
characteristics
specific
location
within
URT,
but
also
interaction
with
both
external
and
intrinsic
factors,
such
as
ageing,
diseases,
immune
responses,
olfactory
function,
lifestyle
habits
smoking.
We
summarize
here
current
knowledge
about
URT
microbiome
in
health
disease,
discuss
methodological
issues,
consider
potential
nasal
to
be
used
medical
diagnostics
target
therapy.
Frontiers in Physiology,
Год журнала:
2019,
Номер
10
Опубликована: Апрель 16, 2019
The
microbial
community
of
the
gut
conveys
significant
benefits
to
host
physiology.
A
clear
relationship
has
now
been
established
between
bacteria
and
metabolism
in
which
microbial-mediated
hormone
release
plays
an
important
role.
Within
lumen,
produce
a
number
metabolites
contain
structural
components
that
act
as
signaling
molecules
cell
types
within
mucosa.
Enteroendocrine
cells
mucosal
lining
synthesize
secrete
hormones
including
CCK,
PYY,
GLP-1,
GIP
5-HT,
have
regulatory
roles
key
metabolic
processes
such
insulin
sensitivity,
glucose
tolerance,
fat
storage
appetite.
Release
these
can
be
influenced
by
presence
their
such,
is
component
regulation
metabolism.
Dietary
or
pharmacological
interventions
alter
microbiome
therefore
pose
potential
therapeutics
for
treatment
human
disorders.
This
review
aims
describe
complex
interaction
intestinal
microbiota
enteroendocrine
cells,
highlight
how
influence
through
release.
FEMS Microbiology Letters,
Год журнала:
2018,
Номер
365(9)
Опубликована: Март 9, 2018
Ammonia
oxidation
is
a
fundamental
core
process
in
the
global
biogeochemical
nitrogen
cycle.
Oxidation
of
ammonia
(NH3)
to
nitrite
(NO2
-)
first
and
rate-limiting
step
nitrification
carried
out
by
distinct
groups
microorganisms.
essential
for
nutrient
turnover
most
terrestrial,
aquatic
engineered
ecosystems
plays
major
role,
both
directly
indirectly,
greenhouse
gas
production
environmental
damage.
Although
has
been
studied
over
century,
this
research
field
galvanised
past
decade
surprising
discoveries
novel
oxidising
This
review
reflects
on
date
discusses
gaps
remaining
our
knowledge
biology
oxidation.
From
protists
to
humans,
all
animals
and
plants
are
inhabited
by
microbial
organisms.
There
is
an
increasing
appreciation
that
these
resident
microbes
influence
the
fitness
of
their
plant
animal
hosts,
ultimately
forming
a
metaorganism
consisting
uni-
or
multicellular
host
community
associated
microorganisms.
Research
on
host–microbe
interactions
has
become
emerging
cross-disciplinary
field.
In
both
vertebrates
invertebrates
complex
microbiome
confers
immunological,
metabolic
behavioural
benefits;
conversely,
its
disturbance
can
contribute
development
disease
states.
However,
molecular
cellular
mechanisms
controlling
within
poorly
understood
many
key
between
organisms
remain
unknown.
this
perspective
article,
we
outline
some
issues
in
interspecies
particular
address
question
how
metaorganisms
react
adapt
inputs
from
extreme
environments
such
as
deserts,
intertidal
zone,
oligothrophic
seas,
hydrothermal
vents.