Genomic analysis of early ST32 Acinetobacter baumannii strains recovered in US military treatment facilities reveals distinct lineages and links to the origins of the Tn6168 ampC transposon DOI Creative Commons
Liam A. Tobin,

Eradah Abu Sabah,

François Lebreton

и другие.

Journal of Antimicrobial Chemotherapy, Год журнала: 2024, Номер unknown

Опубликована: Дек. 16, 2024

Abstract Objectives To study the population structure and genomic characteristics, including antimicrobial resistance genes, plasmid types surface polysaccharide type, of globally distributed Acinetobacter baumannii belonging to ST32 (Institut Pasteur scheme). Methods Antibiotic phenotype for 19 antibiotics was determined using Vitek 2. Whole-genome sequencing performed Illumina MiSeq platform. Genomes were assembled Newbler. Phylogenetic analysis done by determining core-genome alignments Panaroo v1.3, analysed in IQ-Tree2 v2.2.0.3 construct Maximum Likelihood trees RaxML software. Resistance genes IS identified Abricate programme, ISFinder databases. Results One hundred thirty-three (n = 133) A. isolates this study. These genomes originated mainly from US military treatment facilities 113), but also included additional publicly available GenBank 20) recovered a broad geographic distribution extending Asia South America. all 133 revealed at least four clades, with over 80 forming tightly clustered branch, suggesting they are likely represent outbreak strains. Analysis ampC region showed that strains played significant role formation widely transposon, Tn6168, supplying DNA segments containing an ISAba1-ampC ST32s via homologous recombination. Conclusions evolution antibiotic several sequence ST1 (global clone 1) ST3.

Язык: Английский

Targeting Acinetobacter baumannii resistance-nodulation-division efflux pump transcriptional regulators to combat antimicrobial resistance DOI Creative Commons
Ruwani L. Wimalasekara,

Dawn White,

Ayush Kumar

и другие.

npj Antimicrobials and Resistance, Год журнала: 2025, Номер 3(1)

Опубликована: Янв. 25, 2025

Regulatory elements controlling gene expression fine-tune bacterial responses to environmental cues, including antimicrobials, optimize survival. Acinetobacter baumannii, a pathogen notorious for antimicrobial resistance, relies on efficient efflux systems. Though the role of systems in antibiotic expulsion are well recognized, regulatory mechanisms their remain understudied. This review explores current understanding these regulators, aiming inspire strategies combat resistance and improve therapeutic outcomes.

Язык: Английский

Процитировано

1

Phenotypic and genetic heterogeneity of Acinetobacter baumannii in the course of an animal chronic infection DOI Creative Commons
Léa Bednarczuk,

Alexandre Chassard,

Julie Plantade

и другие.

Microbial Genomics, Год журнала: 2025, Номер 11(2)

Опубликована: Фев. 19, 2025

Acinetobacter baumannii is a nosocomial pathogen associated with various infections, including urinary tract infections (UTIs). In the course of an infection, A. known to rapidly become resistant antibiotic therapy, but much less about possible adaptation without pressure. Through retrospective study, we investigated within-host genetic diversity during subclinical 5-year UTI in animal-patient after withdrawal colistin treatment. We conducted whole-genome sequencing and phenotypic assays on 17 clonally related isolates from Sequence Type 25 lineage. Phylogenomic analysis revealed their proximity animal human strains same country suggesting zoonotic transmission (France). this case presented variations genome sizes nucleotide sequences. Over underwent reduction through insertion sequence (IS) recombination, phage excision or plasmid curing. Alongside global reduction, observed expansion IS17, initially located endogenous large plasmid. Genetic were mainly biofilm formation metabolism genes. repeated affecting three genes two adhesion operons weak biofilm-forming capacity. Conversely, only metabolic recurrently affected, indicated rather stable profile between minor adaptations its host. Lastly, overall decreased resistance - expected absence treatment contrasted conserved due pmrB mutation among isolates.

Язык: Английский

Процитировано

0

Comprehensive molecular epidemiology of Acinetobacter baumannii from diverse sources in Nigeria DOI Creative Commons
Samuel O. Ajoseh, AbdulAzeez Adeyemi Anjorin, Wasiu O. Salami

и другие.

BMC Microbiology, Год журнала: 2025, Номер 25(1)

Опубликована: Март 31, 2025

Abstract Background Acinetobacter baumannii , a Gram-negative bacterium, is public health threat due to its role in nosocomial infections and increasing antibiotic resistance. In Nigeria, data on the molecular epidemiology of A. scarce. This study investigates genetic diversity presence antimicrobial resistance determinants virulence-related genes whole-genome sequencing 189 Nigerian isolates deposited repositories. Genotypes were determined in-silico by multilocus sequence typing (MLST) core genome MLST (cgMLST). Further, (AMR) analyzed. Results Most (57.67%) originated from South-west Nigeria. Isolates human origin accounted for 33.86%, while environmental sources comprised 6.87%, 59.27% lacked information source isolation. The cgMLST analysis revealed multitude genomic lineages circulating Oxford scheme identified 44 types (STs) 62.96% strains, with ST1089 being most prevalent. Pasteur could assign 95.77% strains 49 STs, ST2(IC2) ST85(IC9) dominant. Antimicrobial detected 168 encoding 12 classes, cephalosporin, carbapenem, aminoglycoside Notably, bla ADC−79 (23.81%), OXA−23 (30.69%), aph (3″)-Ib (30%) frequent variants encountered. Seventeen multi-efflux system conferring multiple classes identified. Virulence gene 137 six mechanisms, nutritional factors, effector delivery systems, biofilm production Conclusion highlights AMR virulence emphasizing need ongoing surveillance inform infection control develop management strategies.

Язык: Английский

Процитировано

0

Unveiling transposon-mediated multidrug resistance in OXA-23-producing Acinetobacter baumannii ST79/ST233 subclone KL9-OCL10 in Brazil DOI
João Pedro Rueda Furlan, Micaela Santana Ramos, Rafael da Silva Rosa

и другие.

Gene, Год журнала: 2025, Номер 958, С. 149489 - 149489

Опубликована: Апрель 15, 2025

Язык: Английский

Процитировано

0

An Acinetobacter baumannii nasal carriage isolate recovered from an asymptomatic patient in Vietnam is extensively antibiotic resistant and produces a rare K71 type capsule DOI Creative Commons

Anna M. Shpirt,

Christopher J. Harmer,

Alexander S. Shashkov

и другие.

Microbiology Spectrum, Год журнала: 2024, Номер unknown

Опубликована: Окт. 22, 2024

is a leading cause of multidrug-resistant bacterial infections worldwide, and the capsular polysaccharide (CPS) major virulence determinant. A previous study

Язык: Английский

Процитировано

1

Genomic analysis of early ST32 Acinetobacter baumannii strains recovered in US military treatment facilities reveals distinct lineages and links to the origins of the Tn6168 ampC transposon DOI Creative Commons
Liam A. Tobin,

Eradah Abu Sabah,

François Lebreton

и другие.

Journal of Antimicrobial Chemotherapy, Год журнала: 2024, Номер unknown

Опубликована: Дек. 16, 2024

Abstract Objectives To study the population structure and genomic characteristics, including antimicrobial resistance genes, plasmid types surface polysaccharide type, of globally distributed Acinetobacter baumannii belonging to ST32 (Institut Pasteur scheme). Methods Antibiotic phenotype for 19 antibiotics was determined using Vitek 2. Whole-genome sequencing performed Illumina MiSeq platform. Genomes were assembled Newbler. Phylogenetic analysis done by determining core-genome alignments Panaroo v1.3, analysed in IQ-Tree2 v2.2.0.3 construct Maximum Likelihood trees RaxML software. Resistance genes IS identified Abricate programme, ISFinder databases. Results One hundred thirty-three (n = 133) A. isolates this study. These genomes originated mainly from US military treatment facilities 113), but also included additional publicly available GenBank 20) recovered a broad geographic distribution extending Asia South America. all 133 revealed at least four clades, with over 80 forming tightly clustered branch, suggesting they are likely represent outbreak strains. Analysis ampC region showed that strains played significant role formation widely transposon, Tn6168, supplying DNA segments containing an ISAba1-ampC ST32s via homologous recombination. Conclusions evolution antibiotic several sequence ST1 (global clone 1) ST3.

Язык: Английский

Процитировано

0