Biosynthetic Gene Cluster Diversity Across Native and Introduced Populations of an Ectomycorrhizal Fungus, Suillus luteus DOI Creative Commons
Brooke M. Allen,

C. Stevens,

Rytas Vilgalys

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Сен. 20, 2024

Abstract Non-pathogenic fungi are being increasingly recognized for their involvement in biological invasions, where they have the potential to cause ecological and economical harm. One notable example is ectomycorrhizal (EcM) fungus, Suillus luteus , which commonly found co-invading with non-native pines that escaped from commercial pine plantations across Southern Hemisphere. In such selection pressures imposed by novel plants, soil microbes, environmental conditions, as well impoverished assemblages of EcM fungi, may exert particularly strong selective effects contribute driving evolutionary divergence traits. We investigated impact this global co-introduction on biosynthetic gene cluster (BGC) diversity native introduced populations S. . demonstrated higher BGC at both clan levels compared populations. Additionally, we identified a collection unique BGCs 24 highly conserved clans, including two featuring known pathways, within Furthermore, our study confirmed presence three previously clades distinct family (GCF) diversity. Thus, concludes introduction has driven changes its BGCs, underscoring broader implications co-introductions fungal adaptation new environments.

Язык: Английский

Metagenomic approaches and opportunities in arid soil research DOI
Muhammad Ejaz, Kareem Rady Badr, Zahoor Ul Hassan

и другие.

The Science of The Total Environment, Год журнала: 2024, Номер 953, С. 176173 - 176173

Опубликована: Сен. 10, 2024

Язык: Английский

Процитировано

5
Exploring DNA degradation in situ and in museum storage through genomics and metagenomics DOI Creative Commons
Anne Eriksen, Juan Antonio Rodríguez, Frederik Valeur Seersholm

и другие.

Communications Biology, Год журнала: 2025, Номер 8(1)

Опубликована: Фев. 10, 2025

Язык: Английский

Процитировано

0
Current Approaches and Implications in Discovery of Novel Bioactive Products from Microbial Sources DOI
Ankesh Pandey,

Juveriya Israr,

Janmejay Pandey

и другие.

Current Microbiology, Год журнала: 2025, Номер 82(6)

Опубликована: Апрель 22, 2025

Язык: Английский

Процитировано

0
The prominence of Biosynthetic Gene Clusters in the Halophilic Bacteria DOI
Amit Kumar,

R. Nivetha

Geomicrobiology Journal, Год журнала: 2025, Номер unknown, С. 1 - 9

Опубликована: Апрель 23, 2025

Язык: Английский

Процитировано

0
Symbiont community assembly shaped by insecticide exposure and feedback on insecticide resistance of Spodoptera frugiperda DOI Creative Commons
Yunhua Zhang,

Kaikai Mao,

Keyi Chen

и другие.

Communications Biology, Год журнала: 2024, Номер 7(1)

Опубликована: Сен. 27, 2024

Язык: Английский

Процитировано

3
Metagenomic Insights into Potential Impacts of Antibacterial Biosynthesis and Anthropogenic Activity on Nationwide Soil Resistome DOI
Zhiguo Zhang, Xinyu Zhu, Jian‐Qiang Su

и другие.

Journal of Hazardous Materials, Год журнала: 2024, Номер 473, С. 134677 - 134677

Опубликована: Май 23, 2024

Язык: Английский

Процитировано

2
The soil bacterial communities show resilience in composition and function for 30 years of pine self-reforestation on agricultural lands in Western Russia DOI
О. V. Shopina,

Aleksey I. Bondar,

Елена Тихонова

и другие.

Applied Soil Ecology, Год журнала: 2024, Номер 202, С. 105570 - 105570

Опубликована: Авг. 7, 2024

Язык: Английский

Процитировано

1
Biosynthetic gene clusters from uncultivated soil bacteria of the Atacama Desert DOI Creative Commons

Constanza M. Andreani-Gerard,

Verónica Cambiazo, Maurício González

и другие.

mSphere, Год журнала: 2024, Номер unknown

Опубликована: Сен. 17, 2024

ABSTRACT Soil microorganisms mediate several biological processes through the secretion of natural products synthesized in specialized metabolic pathways, yet functional characterization ecological contexts remains challenging. Using culture-independent metagenomic analyses microbial DNA derived directly from soil samples, we examined potential biosynthetic gene clusters (BGCs) six bacterial communities distributed along an altitudinal gradient Andes Mountains Atacama Desert. We mined 38 metagenome-assembled genomes (MAGs) and identified 168 BGCs. Results indicated that most predicted BGCs were classified as non-ribosomal-peptides (NRP), post-translational modified peptides (RiPP), terpenes, which mainly species Acidobacteriota Proteobacteria phyla. Based on BGC composition according to types core genes, MAGs observed, three them with predominance for a single phylum, two also showed specificity sampling site. Comparative accessory genes associations between membrane transporters other protein domains involved metabolism classes cores, such resistance-nodulation-cell division (RND) multidrug efflux pumps RiPPs iron-dependent transporter TonB terpenes. Our findings increase knowledge regarding uncultured bacteria inhabiting pristine locations one oldest driest nonpolar deserts Earth. IMPORTANCE Much what know about metabolites Desert, including Andean ecosystems, comes isolated intended drug development product discovery. To complement research microbes extreme environments, comparative annotations uncultivated carried out. general, encode structurally unique did not show obvious relationship their taxonomy or geographic distribution. Nevertheless, some members phylogenetic specific traits few Desulfobacterota exhibited niche adaptations. results emphasize studying environmental samples may significantly contribute elucidation structures, activities, roles molecules.

Язык: Английский

Процитировано

1
The impacts of ecological disturbances on the diversity of biosynthetic gene clusters in kauri (Agathis australis) soil DOI Creative Commons
Alexa K. Byers, Nick Waipara, Leo M. Condron

и другие.

Environmental Microbiome, Год журнала: 2024, Номер 19(1)

Опубликована: Сен. 11, 2024

Язык: Английский

Процитировано

0
Biosynthetic Gene Cluster Diversity Across Native and Introduced Populations of an Ectomycorrhizal Fungus, Suillus luteus DOI Creative Commons
Brooke M. Allen,

C. Stevens,

Rytas Vilgalys

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Сен. 20, 2024

Abstract Non-pathogenic fungi are being increasingly recognized for their involvement in biological invasions, where they have the potential to cause ecological and economical harm. One notable example is ectomycorrhizal (EcM) fungus, Suillus luteus , which commonly found co-invading with non-native pines that escaped from commercial pine plantations across Southern Hemisphere. In such selection pressures imposed by novel plants, soil microbes, environmental conditions, as well impoverished assemblages of EcM fungi, may exert particularly strong selective effects contribute driving evolutionary divergence traits. We investigated impact this global co-introduction on biosynthetic gene cluster (BGC) diversity native introduced populations S. . demonstrated higher BGC at both clan levels compared populations. Additionally, we identified a collection unique BGCs 24 highly conserved clans, including two featuring known pathways, within Furthermore, our study confirmed presence three previously clades distinct family (GCF) diversity. Thus, concludes introduction has driven changes its BGCs, underscoring broader implications co-introductions fungal adaptation new environments.

Язык: Английский

Процитировано

0