TGA transcription factors—Structural characteristics as basis for functional variability DOI Creative Commons
Špela Tomaž, Kristina Gruden, Anna Coll

и другие.

Frontiers in Plant Science, Год журнала: 2022, Номер 13

Опубликована: Июль 26, 2022

TGA transcription factors are essential regulators of various cellular processes, their activity connected to different hormonal pathways, interacting proteins and regulatory elements. Belonging the basic region leucine zipper (bZIP) family, TGAs operate by binding target DNA sequence as dimers through a conserved bZIP domain. Despite sharing core DNA-binding sequence, paralogues exert somewhat preferences. Sequence variability N- C-terminal protein parts indicates importance in defining functional specificity interactions with diverse proteins, affecting properties. In this review, we provide short concise summary on plant from structural point view, including relation characteristics roles regulation.

Язык: Английский

Speed–Specificity Trade-Offs in the Transcription Factors Search for Their Genomic Binding Sites DOI Open Access

Tamar Jana,

Sagie Brodsky,

Naama Barkai

и другие.

Trends in Genetics, Год журнала: 2021, Номер 37(5), С. 421 - 432

Опубликована: Янв. 8, 2021

Язык: Английский

Процитировано

55

The (unusual) heuristic value of Hox gene clusters; a matter of time? DOI Creative Commons
Denis Duboule

Developmental Biology, Год журнала: 2022, Номер 484, С. 75 - 87

Опубликована: Фев. 17, 2022

Ever since their first report in 1984, Antennapedia-type homeobox (Hox) genes have been involved such a series of interesting observations, particular due to conserved clustered organization between vertebrates and arthropods, that one may legitimately wonder about the origin this heuristic value. In essay, I consider different examples where Hox gene clusters instrumental providing conceptual advances, taken from various fields research mostly involving vertebrate embryos. These touch upon our understanding genomic evolution, revisiting 19th century views on relationships development evolution building new framework understand long-range pleiotropic regulation during development. then discuss whether high value family, when considered as an epistemic object, is related its structure (and absence thereof some animal species) and, if so, what it genetic oddities made them so generous scientific community with information.

Язык: Английский

Процитировано

35

Structural insights into p300 regulation and acetylation-dependent genome organisation DOI Creative Commons
Ziad Ibrahim, Tao Wang, Olivier Destaing

и другие.

Nature Communications, Год журнала: 2022, Номер 13(1)

Опубликована: Дек. 15, 2022

Histone modifications are deposited by chromatin modifying enzymes and read out proteins that recognize the modified state. BRD4-NUT is an oncogenic fusion protein of acetyl lysine reader BRD4 binds to acetylase p300 enables formation long-range intra- interchromosomal interactions. We here examine how acetylation reading writing enable such show NUT contains acidic transcriptional activation domain TAZ2 p300. use NMR investigate structure complex found has autoinhibitory role for NUT-TAZ2 interaction or mutations in cancer interfere with autoinhibition allosterically activate results a self-organizing, acetylation-dependent feed-forward reaction interactions bromodomain multivalent acetyl-lysine binding. discuss implications organisation, gene regulation dysregulation disease.

Язык: Английский

Процитировано

35

Elucidating the biology of transcription factor–DNA interaction for accurate identification of cis-regulatory elements DOI Creative Commons
Mohsen Hajheidari, Shao‐shan Carol Huang

Current Opinion in Plant Biology, Год журнала: 2022, Номер 68, С. 102232 - 102232

Опубликована: Июнь 6, 2022

Язык: Английский

Процитировано

28

TGA transcription factors—Structural characteristics as basis for functional variability DOI Creative Commons
Špela Tomaž, Kristina Gruden, Anna Coll

и другие.

Frontiers in Plant Science, Год журнала: 2022, Номер 13

Опубликована: Июль 26, 2022

TGA transcription factors are essential regulators of various cellular processes, their activity connected to different hormonal pathways, interacting proteins and regulatory elements. Belonging the basic region leucine zipper (bZIP) family, TGAs operate by binding target DNA sequence as dimers through a conserved bZIP domain. Despite sharing core DNA-binding sequence, paralogues exert somewhat preferences. Sequence variability N- C-terminal protein parts indicates importance in defining functional specificity interactions with diverse proteins, affecting properties. In this review, we provide short concise summary on plant from structural point view, including relation characteristics roles regulation.

Язык: Английский

Процитировано

28