Chromosome‐level genome assembly and population genomic analysis provide insights into the genetic diversity and adaption of Schizopygopsis younghusbandi on the Tibetan Plateau DOI Creative Commons

Chaowei ZHOU,

Yan Zhou, Luohao Xu

и другие.

Integrative Zoology, Год журнала: 2024, Номер unknown

Опубликована: Сен. 30, 2024

Abstract The Yarlung Tsangpo River on the Tibetan Plateau provides a unique natural environment for studying fish evolution and ecology. However, genomes genetic diversity of plateau species have been rarely reported. Schizopygopsis younghusbandi , highly specialized Schizothoracine economically important inhabiting River, is threatened by overfishing biological invasion. Herein, we generated chromosome‐level genome S. whole‐genome resequencing data 59 individuals from six locations river. results showed that divergence time between other primitive was ∼4.2 Mya, coinciding with major phase Neogene uplift. expanded gene families enriched in DNA integration replication, ion binding transport, energy storage, metabolism likely contribute to adaption this species. may diverged Zanda basin during Pliocene epoch, which underwent population reduction possibly due drastic climate change last glacial period. Population analysis indicated ancient might originated upstream before gradually adapting evolve into populations mid‐stream downstream regions River. In conclusion, provide valuable resources evolution, ecology, conservation studies endemic fishes Plateau.

Язык: Английский

Whole-genome resequencing reveals the selection of adaptive evolution during the domestication of pearl oyster Pinctada maxima DOI
Teng Zhang, Jiawei Zhang, Chuangye Yang

и другие.

Comparative Biochemistry and Physiology Part D Genomics and Proteomics, Год журнала: 2025, Номер unknown, С. 101494 - 101494

Опубликована: Март 1, 2025

Язык: Английский

Процитировано

0
Whole genome re-sequence reveals genetic structure and selection signals of different populations in Megalobrama amblycephala DOI
Shilong Wang, Lifei Luo, Yue Yu

и другие.

Aquaculture, Год журнала: 2024, Номер 595, С. 741548 - 741548

Опубликована: Сен. 2, 2024

Язык: Английский

Процитировано

2
Chromosome‐level genome assembly and population genomic analysis provide insights into the genetic diversity and adaption of Schizopygopsis younghusbandi on the Tibetan Plateau DOI Creative Commons

Chaowei ZHOU,

Yan Zhou, Luohao Xu

и другие.

Integrative Zoology, Год журнала: 2024, Номер unknown

Опубликована: Сен. 30, 2024

Abstract The Yarlung Tsangpo River on the Tibetan Plateau provides a unique natural environment for studying fish evolution and ecology. However, genomes genetic diversity of plateau species have been rarely reported. Schizopygopsis younghusbandi , highly specialized Schizothoracine economically important inhabiting River, is threatened by overfishing biological invasion. Herein, we generated chromosome‐level genome S. whole‐genome resequencing data 59 individuals from six locations river. results showed that divergence time between other primitive was ∼4.2 Mya, coinciding with major phase Neogene uplift. expanded gene families enriched in DNA integration replication, ion binding transport, energy storage, metabolism likely contribute to adaption this species. may diverged Zanda basin during Pliocene epoch, which underwent population reduction possibly due drastic climate change last glacial period. Population analysis indicated ancient might originated upstream before gradually adapting evolve into populations mid‐stream downstream regions River. In conclusion, provide valuable resources evolution, ecology, conservation studies endemic fishes Plateau.

Язык: Английский

Процитировано

1