Molecular Ecology,
Год журнала:
2020,
Номер
29(5), С. 886 - 898
Опубликована: Фев. 3, 2020
Microbial
communities
associated
with
the
gut
and
skin
are
strongly
influenced
by
environmental
factors,
can
rapidly
adapt
to
change.
Historical
processes
may
also
affect
microbiome.
In
particular,
variation
in
microbial
colonisation
early
life
has
potential
induce
lasting
effects
on
assemblages.
However,
little
is
known
about
relative
extent
of
microbiome
plasticity
or
importance
historical
following
change,
especially
for
nonmammalian
species.
To
investigate
this
we
performed
a
reciprocal
translocation
Atlantic
salmon
between
artificial
semi-natural
conditions.
Wild
hatchery-reared
fry
were
transferred
three
common
garden
experimental
environments
6
weeks:
standard
hatchery
conditions,
conditions
an
enriched
diet,
simulated
wild
We
characterized
faecal
individual
fish
before
after
translocation,
using
BACI
(before-after-control-impact)
design.
found
evidence
extensive
both
skin,
greatest
changes
alpha
beta
diversity
largest
environment
diet.
Microbiome
richness
entirely
determined
environment,
no
detectable
origin,
there
was
near-complete
turnover
structure.
identified,
first
time
fish,
reflecting
early-life
experience,
including
ASVs
characteristic
captive
rearing.
These
results
have
important
implications
host
adaptation
local
selective
pressures,
highlight
how
experienced
during
long-term
influence
and,
potentially,
health.
Frontiers in Microbiology,
Год журнала:
2018,
Номер
9
Опубликована: Март 4, 2018
Diet
and
lifestyle
have
a
strong
influence
on
gut
microbiota,
which
in
turn
has
important
implications
variety
of
health-related
aspects.
Despite
great
advances
the
field,
it
remains
unclear
to
extent
composition
microbiota
is
modulated
by
intake
animal
derived
products,
compared
vegetable
based
diet.
Here
specific
impact
vegan,
vegetarian
omnivore
dietary
choicesfeeding
type
101
adults
was
investigated
among
groups
homogeneous
for
variables
known
role
modulating
microbial
such
as
age,
anthropometric
variables,
ethnicity
geographic
area.
The
results
displayed
picture
where
three
different
dietetic
profiles
could
be
well
distinguished
basis
participant's
regimen.
Regarding
microbiota;
vegetarians
had
significantly
greater
richness
omnivorous.
Moreover,
counts
Bacteroidetes
related
operational
taxonomic
units
were
vegans
omnivores.
Interestingly
considering
whole
bacterial
community
cohorts
unexpectedly
similar.
,
probably
due
their
common
terms
nutrients
rather
than
food,
e.g.
high
fat
content
reduced
protein
carbohydrate
intake.
This
finding
suggests
that
fundamental
nutritional
choices
or
omnivory
do
but
not
allow
infer
conclusions
composition,
suggested
possibility
preferential
other
general
life
style
shaping
human
spite
influence.
Consequently,
research
individuals
are
categorised
claimed
feeding
types
limited
use
scientific
studies,
since
appears
oversimplified.
Abstract
Background
Host-associated
microbiomes,
the
microorganisms
occurring
inside
and
on
host
surfaces,
influence
evolutionary,
immunological,
ecological
processes.
Interactions
between
microbiome
affect
metabolism
contribute
to
adaptation
changing
environments.
Meta-analyses
of
host-associated
bacterial
communities
have
potential
elucidate
global-scale
patterns
microbial
community
structure
function.
It
is
possible
that
surface-associated
(external)
microbiomes
respond
more
strongly
variations
in
environmental
factors,
whereas
internal
are
tightly
linked
factors.
Results
Here,
we
use
dataset
from
Earth
Microbiome
Project
accumulate
data
50
additional
studies
totaling
654
species
over
15,000
samples
examine
diversity
We
analyze
non-captive
hosts
sampled
natural
habitats
find
with
bioclimate
geophysical
as
well
land
use,
phylogeny,
trophic
level/diet.
Specifically,
external
best
explained
by
mean
daily
temperature
range
precipitation
seasonality.
In
contrast,
factors
such
phylogeny/immune
complexity
level/diet,
plus
climate.
Conclusions
Internal
predominantly
associated
top-down
effects,
while
climatic
stronger
determinants
surfaces.
Host
immunity
may
act
through
regulation
analogous
predators
non-microbial
ecosystems.
Noting
gaps
geographic
sampling,
this
combined
represents
a
global
baseline
available
for
interrogation
future
ecology
studies.
RSC Advances,
Год журнала:
2018,
Номер
8(74), С. 42380 - 42389
Опубликована: Янв. 1, 2018
The
human
gastrointestinal
tract
colonizes
a
large
number
of
microbial
microflora
to
participate
in
various
metabolic
processes
the
body,
and
plays
major
role
host
immune
response.
Microbiology and Molecular Biology Reviews,
Год журнала:
2020,
Номер
85(1)
Опубликована: Дек. 14, 2020
A
balanced
gut
microbiota
contributes
to
health,
but
the
mechanisms
maintaining
homeostasis
remain
elusive.
Microbiota
assembly
during
infancy
is
governed
by
competition
between
species
and
environmental
factors,
termed
habitat
filters,
that
determine
range
of
successful
traits
within
microbial
community.
Molecular Ecology,
Год журнала:
2020,
Номер
29(5), С. 886 - 898
Опубликована: Фев. 3, 2020
Microbial
communities
associated
with
the
gut
and
skin
are
strongly
influenced
by
environmental
factors,
can
rapidly
adapt
to
change.
Historical
processes
may
also
affect
microbiome.
In
particular,
variation
in
microbial
colonisation
early
life
has
potential
induce
lasting
effects
on
assemblages.
However,
little
is
known
about
relative
extent
of
microbiome
plasticity
or
importance
historical
following
change,
especially
for
nonmammalian
species.
To
investigate
this
we
performed
a
reciprocal
translocation
Atlantic
salmon
between
artificial
semi-natural
conditions.
Wild
hatchery-reared
fry
were
transferred
three
common
garden
experimental
environments
6
weeks:
standard
hatchery
conditions,
conditions
an
enriched
diet,
simulated
wild
We
characterized
faecal
individual
fish
before
after
translocation,
using
BACI
(before-after-control-impact)
design.
found
evidence
extensive
both
skin,
greatest
changes
alpha
beta
diversity
largest
environment
diet.
Microbiome
richness
entirely
determined
environment,
no
detectable
origin,
there
was
near-complete
turnover
structure.
identified,
first
time
fish,
reflecting
early-life
experience,
including
ASVs
characteristic
captive
rearing.
These
results
have
important
implications
host
adaptation
local
selective
pressures,
highlight
how
experienced
during
long-term
influence
and,
potentially,
health.