Background:
Hypoxia
is
an
important
factor
in
the
adaptation
of
tumor
cells
to
their
environment,
contributes
malignant
progression,
and
affects
prognosis
drug
sensitivity.
Although
there
a
wealth
transcriptomic
data
stored
public
databases,
lack
web-based
tools
for
analyzing
these
explore
link
between
hypoxia
mechanisms
tumorigenesis
progression.
Methods:
We
have
developed
interactive
tool
called
THER,
which
designed
help
users
easily
identify
potential
targets,
action
effective
drugs
treating
hypoxic
tumors.
THER
integrates
63
datasets
from
Gene
Expression
Omnibus
(GEO)
database,
covering
3
species,
18
types
42
cell
line
types.
Findings:
This
web
provides
five
modules
that
allow
perform
differential
expression
analysis,
profiling
correlation
enrichment
analysis
sensitivity
on
different
based
oxygen
statuses.
Users
can
use
autonomously
various
features
samples
under
hypoxia/normoxia
conditions
investigate
changes
occur
tumors
environments.Interpretation:
expect
will
be
able
valuable
biomarkers,
further
reveal
molecular
hypoxia,
drugs,
thus
providing
scientific
basis
diagnosis
treatment.
open
all
accessed
without
login
at
https://smuonco.shinyapps.io/THER/.Funding:
None.Declaration
Interest:
The
authors
declare
no
conflict
interest.
ACS Nano,
Год журнала:
2024,
Номер
18(5), С. 4360 - 4375
Опубликована: Янв. 26, 2024
Targeting
nutrient
metabolism
has
been
proposed
as
an
effective
therapeutic
strategy
to
combat
breast
cancer
because
of
its
high
requirements.
However,
metabolic
plasticity
enables
cells
survive
under
unfavorable
starvation
conditions.
The
key
mammalian
target
regulators
rapamycin
(mTOR)
and
hypoxia-inducible-factor-1
(HIF-1)
tightly
link
the
dynamic
glutamine
glucose
maintain
flux.
Blocking
flow
also
induces
autophagy
recycle
nutrients
in
autophagosome,
which
exacerbates
metastasis
tumor
progression.
Compared
other
common
cancers,
is
even
more
dependent
on
mTOR
HIF-1
orchestrate
network.
Therefore,
we
develop
a
cascade-boosting
integrated
nanomedicine
reprogram
complementary
coupled
with
cancer.
Glucose
oxidase
efficiently
consumes
glucose,
while
delivery
inside
limits
flux
uncouples
feedback
regulation
HIF-1.
hydroxyl
radical
generated
cascade
blocks
later
phase
without
recycling.
This
targeting
orchestrated
can
disrupt
coordination
amino
acids,
nucleotides,
lipids,
pathways
tissues,
effectively
improving
durable
antitumor
effect
prognosis
Overall,
system
provides
viable
address
cellular
efficient
enzyme
delivery.
Journal of Translational Medicine,
Год журнала:
2023,
Номер
21(1)
Опубликована: Июль 26, 2023
Ovarian
cancer
(OC)
is
the
most
lethal
malignant
gynecological
tumor
type
for
which
limited
therapeutic
targets
and
drugs
are
available.
Enhanced
mitochondrial
oxidative
phosphorylation
(OXPHOS),
enables
cell
growth,
migration,
stem
maintenance,
a
critical
driver
of
disease
progression
potential
intervention
target
OC.
However,
current
OXPHOS
strategy
mainly
suppresses
activity
electron
transport
chain
directly
cannot
effectively
distinguish
normal
tissues
from
tissues,
resulting
in
serious
side
effects
efficacy.We
screened
natural
product
libraries
to
investigate
anti-OC
that
OXPHOS.
Additionally,
LC-MS,
qRT-PCR,
western-blot,
clonogenic
assay,
Immunohistochemistry,
wound
scratch
xenograft
model
was
applied
evaluate
anti-tumor
mechanism
small
molecules
obtained
by
screening
OC.Gossypol
acetic
acid
(GAA),
widely
used
medicine,
out
drug
library
with
function
suppressing
OC
targeting
leucine-rich
pentatricopeptide
repeat
containing
(LRPPRC)
protein.
Mechanically,
LRPPRC
promotes
synthesis
subunits
binding
RNAs
encoded
DNA.
GAA
binds
induces
rapid
degradation
ubiquitin-independent
manner.
overexpressed
OC,
highly
correlated
poor
outcomes
could
promote
phenotype
cells
vitro
vivo.
management
inhibits
clonal
formation,
maintenance
vitro,
subcutaneous
graft
growth
vivo.Our
study
identified
provided
corresponding
inhibitor
OXPHOS-based
therapy.
complex
via
protein,
supporting
its
utility
as
agent
ovarian
cancer.
PLoS Genetics,
Год журнала:
2025,
Номер
21(2), С. e1011570 - e1011570
Опубликована: Фев. 10, 2025
Tibetan
adaptation
to
high-altitude
hypoxia
remains
a
classic
example
of
Darwinian
selection
in
humans.
Amongst
populations,
alleles
the
EPAS1
gene
-
whose
protein
product,
HIF-2α,
is
central
regulator
response
have
repeatedly
been
shown
carry
some
strongest
signals
positive
However,
selective
sweep
alone
may
only
account
for
phenotypes
that
differentiate
adapted
populations
from
closely
related
lowlanders.
Therefore,
there
pressing
need
functionally
probe
adaptive
and
their
impact
at
both
locus-specific
genome-wide
levels
across
cell
types
uncover
full
range
beneficial
traits.
To
this
end,
we
established
library
induced
pluripotent
stem
cells
(iPSCs)
derived
Han
Chinese
individuals,
robust
model
system
allowing
precise
exploration
allelic
effects
on
transcriptional
responses,
differentiated
them
into
vascular
endothelium.
Using
system,
focus
first
hypoxia-dependent
enhancer
(ENH5)
contributes
regulation
investigate
its
Then,
cast
wider
net,
harness
same
experimental
compare
transcriptome
find
evidence
angiogenesis,
energy
metabolism
immune
pathways
differ
between
these
two
with
different
histories
long-term
residence
high
altitude.
Coupled
polygenic
adaptations
targeting
pathways,
results
suggests
observed
differences
were
shaped
by
natural
selection.
Immunobiology,
Год журнала:
2025,
Номер
230(2), С. 152884 - 152884
Опубликована: Фев. 17, 2025
Immune-related
adverse
reactions
(irAEs)
are
common
after
immune
checkpoint
inhibitor
treatment,
impacting
the
universality
and
continued
use
of
immunotherapy.
Currently,
preclinical
models
to
investigate
mechanisms
underlying
these
effects
inadequate.
This
study
aims
develop
both
in
vitro
vivo
irAEs
advance
basic
research
on
reactions.
For
models,
we
designed
two
co-culture
systems:
"Lung
epithelial
cells-PBMC"
conditional
model
"organoid-PBMCs"
model.
These
involve
culturing
spheroids,
patient-derived
organoids
isolating,
expanding,
co-culturing
peripheral
blood
mononuclear
cells
(PBMCs).
model,
PD1
humanized
mice
were
used
establish
a
lung
carcinoma
situ
offspring,
with
blocked
checkpoints
induce
systemic
inflammatory
responses.
Mice
without
PD-1
blockade
served
as
control
group.
In
organoid
"lung
cell-PBMC"
compared
group,
PBMC+anti-PD1
group
exhibited
injury,
demonstrated
by
worst
activity,
increased
collagen
deposition,
elevated
mRNA
levels
αSMA
Vimentin,
higher
Fibronectin
expression,
factors
(IL6,
IL1β,
MPO)
culture
supernatant
(p
<
0.05).
also
showed
pulmonary
inflammation,
slower
weight
gain
affected
mice,
more
obvious
interstitial
thickening(Masson
staining
α-SMA
immunofluorescence
staining),
IL17A
alveolar
lavage
fluid
serum.
successfully
developed
using
technology,
conditioned
mouse
effectively
reproducing
injury
offering
valuable
tools
for
irAE
research.
Frontiers in Cell and Developmental Biology,
Год журнала:
2023,
Номер
11
Опубликована: Ноя. 14, 2023
Introduction:
Detachment
from
the
extracellular
matrix
(ECM)
is
first
step
of
metastatic
cascade.
It
a
regulated
process
involving
interaction
between
tumor
cells
and
microenvironment
(TME).
Iron
key
micronutrient
within
TME.
Here,
we
explored
role
iron
in
ability
ovarian
cancer
to
successfully
detach
ECM.
Methods:
HEY
PEO1
were
grown
3D
conditions.
To
mimic
an
rich
TME,
culture
media
supplemented
with
100
μM
Fe3+.
Cell
mortality
was
evaluated
by
cytofluorimetric
assay.
The
invasive
potential
spheroids
performed
Matrigel
documented
images
time-lapses.
metabolism
assessed
analyzing
expression
CD71
FtH1,
quantifying
intracellular
labile
pool
(LIP)
through
Calcein-AM
Ferroptosis
mitochondrial
reactive
oxygen
species
(ROS)
lipid
peroxidation
MitoSOX
BODIPY-C11
assays,
respectively.
markers
GPX4
VDAC2
measured
Western
blot.
FtH1
knockdown
using
siRNA.
Results:
generate
spheroids,
prevent
LIP
accumulation
upregulating
FtH1.
moderately
increases
only
slightly
reduced.
PEO1upregulate
results
significantly
diminished.
import
downregulating
CD71,
while
strongly
enhance
it.
Intracellular
ROS
drop
down
during
2D
transition
both
cell
lines,
but
more
cells.
Upon
supplementation,
continue
without
accumulating
do
not
undergo
ferroptosis.
HEY,
instead,
accumulate
LIP,
ferroptosis
attenuate
their
sphere-forming
invasiveness.
reduces
generation
although
sensitizing
them
Discussion:
reprogramming
event
spheroid
An
iron-rich
environment
impairs
causes
death
sensitive
A
better
understanding
sensitivity
could
be
useful
develop
effective
treatments
kill
ECM-detached
Cell Death and Disease,
Год журнала:
2024,
Номер
15(4)
Опубликована: Апрель 29, 2024
Scientific
literature
supports
the
evidence
that
cancer
stem
cells
(CSCs)
retain
inside
low
reactive
oxygen
species
(ROS)
levels
and
are,
therefore,
less
susceptible
to
cell
death,
including
ferroptosis,
a
type
of
death
dependent
on
iron-driven
lipid
peroxidation.
A
collection
lung
adenocarcinoma
(LUAD)
primary
lines
derived
from
malignant
pleural
effusions
(MPEs)
patients
was
used
obtain
3D
spheroids
enriched
for
stem-like
properties.
We
observed
ferroptosis
inducer
RSL3
triggered
peroxidation
in
LUAD
when
grown
2D
conditions;
however,
conditions,
all
underwent
phenotypic
switch,
exhibiting
substantial
resistance
and,
protection
against
ferroptotic
death.
Interestingly,
this
phenomenon
reversed
by
disrupting
growing
them
back
adherence,
supporting
idea
CSCs
plasticity,
which
holds
have
dynamic
ability
transition
between
CSC
state
non-CSC
state.
Molecular
analyses
showed
correlated
with
an
increased
expression
antioxidant
genes
high
proteins
involved
iron
storage
export,
indicating
oxidative
stress
availability
initiation
ferroptosis.
Moreover,
transcriptomic
highlighted
novel
subset
commonly
modulated
potentially
capable
driving
LUAD-CSCs,
thus
allowing
better
understand
mechanisms
CSC-mediated
drug
tumors.
Journal of Experimental & Clinical Cancer Research,
Год журнала:
2024,
Номер
43(1)
Опубликована: Июнь 14, 2024
Abstract
Background
Pancreatic
ductal
adenocarcinoma
(PDAC)
is
the
most
lethal
cancer
with
an
aggressive
metastatic
phenotype
and
very
poor
clinical
prognosis.
Interestingly,
a
lower
occurrence
of
PDAC
has
been
described
in
individuals
severe
long-standing
asthma.
Here
we
explored
potential
link
between
glucocorticoid
(GC)
budesonide,
first-line
therapy
to
treat
Methods
We
tested
effect
budesonide
classical
GCs
on
morphology,
proliferation,
migration
invasiveness
patient-derived
cells
pancreatic
cell
lines,
using
2D
3D
cultures
vitro.
Furthermore,
xenograft
model
was
used
investigate
tumor
growth
vivo.
Finally,
combined
genome-wide
transcriptome
analysis
genetic
pharmacological
approaches
explore
mechanisms
underlying
activities
different
environmental
conditions.
Results
found
that
culture
settings,
high
micromolar
concentrations
reduced
mesenchymal
invasive/migrating
features
cells,
without
affecting
proliferation
or
survival.
This
activity
specific
independent
Glucocorticoid
Receptor
(GR).
Conversely,
more
physiological
environment,
low
nanomolar
strongly
GR-dependent
manner.
Accordingly,
Mechanistically,
demonstrated
environment
drives
towards
general
metabolic
reprogramming
involving
protein,
lipid,
energy
metabolism
(e.g.,
increased
glycolysis
dependency).
change
sensitizes
anti-proliferative
which
instead
induces
opposite
changes
mitochondrial
oxidative
phosphorylation).
provide
evidence
inhibits
growth,
at
least
part,
through
suppressor
CDKN1C/p57Kip2.
Conclusions
Collectively,
our
study
reveals
microenvironment
influences
susceptibility
provides
unprecedented
for
conditions,
vitro
Our
findings
may
explain,
reason
asthmatic
patients
suggest
suitability
trials
as
therapeutic
approach
fight
cancer.
Genomics,
Год журнала:
2024,
Номер
116(5), С. 110904 - 110904
Опубликована: Июль 29, 2024
Recently,
elevated
seawater
temperatures
have
resulted
numerous
adverse
effects,
including
significant
mortality
among
bivalves.
The
dwarf
surf
clam,
Mulinia
lateralis,
is
considered
a
valuable
model
species
for
bivalve
research
due
to
its
rapid
growth
and
short
generation
time.
successful
cultivation
in
laboratory
setting
throughout
entire
life
cycle
makes
it
an
ideal
candidate
exploring
the
potential
mechanisms
underlying
responses
thermal
stress.
In
this
study,
total
of
600
clams
were
subjected
17-day
stress
experiment
at
temperature
30
°C
which
semi-lethal
species.
Ninety
individuals
who
perished
initially
classified
as
heat-sensitive
populations
(HSP),
while
89
survived
heat-tolerant
(HTP).
Subsequently,
179
then
sequenced,
21,292
single
nucleotide
polymorphisms
(SNPs)
genotyped
downstream
analysis.
heritability
estimate
survival
status
was
found
be
0.375
±
0.127
suggesting
genetic
basis
tolerance
trait.
Furthermore,
genome-wide
association
study
(GWAS)
identified
three
SNPs
10
genes
associated
with
trait
M.
lateralis.
These
involved
ETHR/EHF
signaling
pathway
played
pivotal
role
signal
sensory,
cell
adhesion,
oxidative
stress,
DNA
damage
repair,
etc.
Additionally,
qPCR
results
indicated
that,
excluding
MGAT4A,
ZAN,
RFC1
genes,
all
others
exhibited
significantly
higher
expression
HTP
(p
<
0.05),
underscoring
critical
involvement
lateralis'
tolerance.
unveil
presence
standing
variations
highlighting
regulatory
bivalve's
response
contribute
comprehension