A single-cell map of antisense oligonucleotide activity in the brain
Nucleic Acids Research,
Год журнала:
2023,
Номер
51(14), С. 7109 - 7124
Опубликована: Май 16, 2023
Abstract
Antisense
oligonucleotides
(ASOs)
dosed
into
cerebrospinal
fluid
(CSF)
distribute
broadly
throughout
the
central
nervous
system
(CNS).
By
modulating
RNA,
they
hold
promise
of
targeting
root
molecular
causes
disease
and
potential
to
treat
myriad
CNS
disorders.
Realization
this
requires
that
ASOs
must
be
active
in
disease-relevant
cells,
ideally,
monitorable
biomarkers
also
reflect
ASO
activity
these
cells.
The
biodistribution
such
centrally
delivered
have
been
deeply
characterized
rodent
non-human
primate
(NHP)
models,
but
usually
only
bulk
tissue,
limiting
our
understanding
distribution
across
individual
cells
diverse
cell
types.
Moreover,
human
clinical
trials,
target
engagement
is
a
single
compartment,
CSF.
We
sought
deeper
how
types
contribute
tissue
signal
CNS,
are
linked
CSF
biomarker
outcomes.
employed
nucleus
transcriptomics
on
from
mice
treated
with
RNase
H1
against
Prnp
Malat1
NHPs
an
PRNP.
Pharmacologic
was
observed
every
type,
though
sometimes
substantial
differences
magnitude.
Single
RNA
count
distributions
implied
suppression
sequenced
cell,
rather
than
intense
knockdown
some
Duration
action
up
12
weeks
post-dose
differed
types,
being
shorter
microglia
neurons.
Suppression
neurons
generally
similar
to,
or
more
robust
than,
tissue.
In
macaques,
PrP
lowered
40%
conjunction
PRNP
all
including
neurons,
arguing
readout
likely
pharmacodynamic
effect
neuronal
disorder.
Our
results
provide
reference
dataset
for
establish
sequencing
as
method
evaluating
type
specificity
oligonucleotide
therapeutics
other
modalities.
Язык: Английский
NG2 glia protect against prion neurotoxicity by inhibiting microglia-to-neuron prostaglandin E2 signaling
Nature Neuroscience,
Год журнала:
2024,
Номер
27(8), С. 1534 - 1544
Опубликована: Май 27, 2024
Oligodendrocyte-lineage
cells,
including
NG2
glia,
undergo
prominent
changes
in
various
neurodegenerative
disorders.
Here,
we
identify
a
neuroprotective
role
for
glia
against
prion
toxicity.
were
activated
after
infection
cerebellar
organotypic
cultured
slices
(COCS)
and
brains
of
prion-inoculated
mice.
In
both
model
systems,
depletion
exacerbated
prion-induced
neurodegeneration
accelerated
pathology.
Loss
enhanced
the
biosynthesis
prostaglandin
E2
(PGE2)
by
microglia,
which
augmented
neurotoxicity
through
binding
to
EP4
receptor.
Pharmacological
or
genetic
inhibition
PGE2
attenuated
COCS
mice,
reduced
NG2-glia-depleted
infection,
dampened
acceleration
disease
These
data
unveil
non-cell-autonomous
interaction
between
microglia
suggest
that
signaling
may
represent
an
actionable
target
diseases.
Язык: Английский
Region-Specific Homeostatic Identity of Astrocytes Is Essential for Defining Their Response to Pathological Insults
Natallia Makarava,
Olga Mychko,
Kara Molesworth
и другие.
Cells,
Год журнала:
2023,
Номер
12(17), С. 2172 - 2172
Опубликована: Авг. 30, 2023
The
transformation
of
astrocytes
into
reactive
states
constitutes
a
biological
response
the
central
nervous
system
under
variety
pathological
insults.
Astrocytes
display
diverse
homeostatic
identities
that
are
developmentally
predetermined
and
regionally
specified.
Upon
associated
with
neurodegenerative
diseases
other
neurological
disorders,
acquire
phenotypes.
However,
it
is
not
clear
whether
their
phenotypes
dictated
by
region-specific
identity
or
nature
an
insult.
To
address
this
question,
gene
expression
profiling
was
performed
for
four
brain
regions
(cortex,
hippocampus,
thalamus,
hypothalamus)
in
mice
using
custom
NanoString
panel
consisting
selected
sets
genes
astrocyte
functions
reactivity
five
conditions:
prion
disease,
traumatic
injury,
ischemia,
5XFAD
Alzheimer’s
disease
model
normal
aging.
states,
predominantly
were
found
to
respond
insults
manner.
Regardless
insult
insult-specificity
response,
strong
correlations
between
undirected
GSA
(gene
set
analysis)
scores
reporting
on
observed
within
each
individual
region.
insult-specific
signatures
did
separate
well
from
instead
partially
overlapped,
forming
continuums.
current
study
demonstrates
important
defining
Within
populations,
show
continuums
signatures,
overlapping
Язык: Английский
Selective Vulnerability to Neurodegenerative Disease: Insights from Cell Type-Specific Translatome Studies
Biology,
Год журнала:
2024,
Номер
13(2), С. 67 - 67
Опубликована: Янв. 23, 2024
Neurodegenerative
diseases
(NDs)
manifest
a
wide
variety
of
clinical
symptoms
depending
on
the
affected
brain
regions.
Gaining
insights
into
why
certain
regions
are
resistant
while
others
susceptible
is
vital
for
advancing
therapeutic
strategies.
While
gene
expression
changes
offer
clues
about
disease
responses
across
regions,
mixture
cell
types
therein
obscures
experimental
results.
In
recent
years,
methods
that
analyze
transcriptomes
individual
cells
(e.g.,
single-cell
RNA
sequencing
or
scRNAseq)
have
been
widely
used
and
provided
invaluable
specific
types.
Concurrently,
transgene-based
techniques
dissect
type-specific
translatomes
(CSTs)
in
model
systems,
like
RiboTag
bacTRAP,
unique
advantages
but
received
less
attention.
This
review
juxtaposes
merits
drawbacks
both
methodologies,
focusing
use
CSTs
understanding
conditions
amyotrophic
lateral
sclerosis
(ALS),
Huntington’s
(HD),
Alzheimer’s
(AD),
prion
fatal
familial
insomnia
(FFI),
genetic
Creutzfeldt–Jakob
(gCJD),
acquired
disease.
We
conclude
by
discussing
emerging
trends
observed
multiple
methods.
Язык: Английский
The Role of Glial Cells in Neurobiology and Prion Neuropathology
Cells,
Год журнала:
2024,
Номер
13(10), С. 832 - 832
Опубликована: Май 14, 2024
Prion
diseases
are
rare
and
neurodegenerative
that
characterized
by
the
misfolding
infectious
spread
of
prion
protein
in
brain,
causing
progressive
irreversible
neuronal
loss
associated
clinical
behavioral
manifestations
humans
animals,
ultimately
leading
to
death.
The
brain
has
a
complex
network
neurons
glial
cells
whose
crosstalk
is
critical
for
function
homeostasis.
Although
it
established
infection
necessary
disease
occur,
debate
remains
field
as
role
played
cells,
namely
astrocytes
microglia,
whether
these
beneficial
host
or
further
accelerate
disease.
Here,
we
review
current
literature
assessing
morphologies
between
two
cell
types,
prion-infected
brain.
Язык: Английский
Multiomic Analyses Direct Hypotheses for Creutzfeldt-Jakob Disease Risk Genes
medRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Июль 21, 2024
Abstract
Prions
are
assemblies
of
misfolded
prion
protein
that
cause
several
fatal
and
transmissible
neurodegenerative
diseases,
with
the
most
common
phenotype
in
humans
being
sporadic
Creutzfeldt-Jakob
disease
(sCJD).
Aside
from
variation
itself,
molecular
risk
factors
not
well
understood.
Prion
prion-like
mechanisms
thought
to
underpin
disorders
meaning
elucidation
could
have
broad
relevance.
Herein
we
sought
further
develop
our
understanding
confer
sCJD
using
a
systematic
gene
prioritization
functional
interpretation
pipeline
based
on
multiomic
integrative
analyses.
We
integrated
published
genome-wide
association
study
(GWAS)
summary
statistics
publicly
available
bulk
brain
cell
type
expression
datasets.
performed
multiple
transcriptome
proteome-wide
studies
(TWAS
&
PWAS)
Bayesian
genetic
colocalization
analyses
between
signals
quantitative
trait
loci
signals.
then
applied
obtained
results
nominated
prioritized
genes
risk-associated
manner.
Genetic
upregulation
both
syntaxin-6
(
STX6
)
was
associated
datasets,
regulation
specific
oligodendrocytes.
Similarly,
increased
disulfide
isomerase
family
A
member
4
PDIA4
),
involved
unfolded
response,
linked
risk,
particularly
excitatory
neurons.
Protein
mesencephalic
astrocyte
derived
neurotrophic
factor
MANF
protection
against
endoplasmic
reticulum
stress
sulfatide
binding
(linking
enzyme
final
step
synthesis,
encoded
by
GAL3ST1
identified
as
protective
sCJD.
In
total
32
were
into
two
tiers
level
evidence
confidence
for
studies.
This
provides
insights
genetically-associated
underlying
susceptibility
prioritizes
hypotheses
exploration
beyond
itself
previously
highlighted
through
newly
mechanisms.
These
findings
highlight
importance
glial
cells,
sulfatides
neuron
response
pathogenesis.
Язык: Английский
Single-cell transcriptomics unveils molecular signatures of neuronal vulnerability in a mouse model of prion disease that overlap with Alzheimer’s disease
Nature Communications,
Год журнала:
2024,
Номер
15(1)
Опубликована: Ноя. 23, 2024
Язык: Английский
Excitatory neuron-prone prion propagation and excitatory neuronal loss in prion-infected mice
Temuulen Erdenebat,
Yusuke Komatsu,
Nozomi Uwamori
и другие.
Frontiers in Molecular Neuroscience,
Год журнала:
2024,
Номер
17
Опубликована: Дек. 12, 2024
The
accumulation
of
a
disease-specific
isoform
prion
protein
(PrP
Sc
)
and
histopathological
lesions,
such
as
neuronal
loss,
are
unevenly
distributed
in
the
brains
humans
animals
affected
with
diseases.
This
distribution
varies
depending
on
diseases
and/or
combinations
strain
experimental
animal.
brain
region-dependent
PrP
neuropathological
lesions
suggests
cell-type-dependent
propagation
vulnerability
to
infection.
However,
underlying
mechanism
is
largely
unknown.
In
this
study,
we
provided
evidence
that
22L
propagates
more
efficiently
excitatory
neurons
than
inhibitory
thalamus
vulnerable
was
less
intense
striatum,
where
GABAergic
predominate,
compared
cerebral
cortex
thalamus,
glutamatergic
predominant,
mice
intracerebrally
or
intraperitoneally
inoculated
strain.
stains
were
observed
along
needle
track
after
stereotaxic
injection
into
whereas
they
also
away
from
thalamus.
Consistent
inefficient
propagated
primary
cultures.
RNAscope
situ
hybridization
revealed
decrease
Vglut1
-
Vglut2
-expressing
ventral
posterolateral
nuclei
strain-infected
mice,
no
Vgat
adjacent
reticular
nucleus,
mainly
composed
interneurons.
neuron-prone
loss
shed
light
Язык: Английский
A single-cell map of antisense oligonucleotide activity in the brain
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Фев. 14, 2023
Antisense
oligonucleotides
(ASOs)
dosed
into
cerebrospinal
fluid
(CSF)
distribute
broadly
throughout
the
brain
and
hold
promise
of
treating
myriad
diseases
by
modulating
RNA.
CNS
tissue
is
not
routinely
biopsied
in
living
individuals,
leading
to
reliance
on
CSF
biomarkers
inform
drug
target
engagement.
Animal
models
can
link
parenchyma,
but
our
understanding
how
individual
cells
contribute
bulk
signal
limited.
Here
we
employed
single
nucleus
transcriptomics
from
mice
treated
with
RNase
H1
ASOs
against
Prnp
Malat1
macaques
an
ASO
PRNP
.
Activity
was
observed
every
cell
type,
though
sometimes
substantial
differences
magnitude.
Single
RNA
count
distributions
implied
suppression
sequenced
cell,
rather
than
intense
knockdown
only
some
cells.
Duration
action
up
12
weeks
post-dose
differed
across
types,
being
shorter
microglia
neurons.
Suppression
neurons
generally
similar
to,
or
more
robust
than,
tissue.
In
macaques,
PrP
lowered
40%
conjunction
all
types
including
neurons,
arguing
that
a
biomarker
readout
likely
reflect
disease-relevant
neuronal
disorder.
Язык: Английский
NG2 glia protect against prion neurotoxicity by inhibiting prostaglandin E2 signaling
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Апрель 4, 2023
Abstract
Oligodendrocyte-lineage
cells,
including
NG2
glia,
undergo
prominent
changes
in
various
neurodegenerative
disorders.
This
raises
the
question
of
how
myelinating
cells
interact
with
processes.
Here,
we
found
that
glia
were
activated
after
prion
infection
cerebellar
organotypic
cultured
slices
(COCS)
and
brains
prion-inoculated
mice.
In
both
model
systems,
depletion
exacerbated
prion-induced
neurodegeneration
accelerated
pathology.
Loss
unleashed
a
microglial
reaction
promoting
biosynthesis
prostaglandin
E2
(PGE2),
which
augmented
neurotoxicity
HovS
cell
line,
primary
neurons
COCS
through
binding
to
EP4
receptor.
Single-cell
RNA
sequencing
revealed
molecular
signatures
inflammatory,
disease-associated
MHC
+
microglia
but
not
interferon-responsiveness
PGE2-producing
Pharmacological
or
genetic
inhibition
PGE2
attenuated
mice,
reduced
enhanced
NG2-glia-depleted
infection,
dampened
acceleration
disease
These
data
unveil
non-cell-autonomous
interaction
between
suggest
signaling
may
represent
an
actionable
target
against
diseases.
Язык: Английский