Viruses,
Год журнала:
2021,
Номер
14(1), С. 23 - 23
Опубликована: Дек. 23, 2021
Severe
Acute
Respiratory
Syndrome
Coronavirus
2
(SARS-CoV-2)
quickly
spread
worldwide
following
its
emergence
in
Wuhan,
China,
and
hit
pandemic
levels.
Its
tremendous
incidence
favoured
the
of
viral
variants.
The
current
genome
diversity
SARS-CoV-2
has
a
clear
impact
on
epidemiology
clinical
practice,
especially
regarding
transmission
rates
effectiveness
vaccines.
In
this
study,
we
evaluated
replication
different
isolates
representing
virus
genotypes
which
have
been
isolated
throughout
pandemic.
We
used
three
distinct
cell
lines,
including
Vero
E6
cells
originating
from
monkeys;
Caco-2
cells,
an
intestinal
epithelium
line
humans;
Calu-3
pulmonary
also
humans.
RT-qPCR
to
replicate
by
quantifying
released
culture
supernatant
infected
cells.
found
that
similarly
but
show
very
replicative
capacities
This
was
highlighted
for
lineages
B.1.1.7,
B.1.351
P.1,
are
considered
be
variants
concern.
These
results
underscore
importance
evaluation
characterisation
each
isolate
order
establish
patterns
before
performing
tests,
consideration
ideal
genotype-cell
type
pair
assay.
medRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2021,
Номер
unknown
Опубликована: Авг. 13, 2021
Abstract
Background
SARS-CoV-2
epidemiology
implicates
airborne
transmission;
aerosol
infectiousness
and
impacts
of
masks
variants
on
shedding
are
not
well
understood.
Methods
We
recruited
COVID-19
cases
to
give
blood,
saliva,
mid-turbinate
fomite
(phone)
swabs,
30-minute
breath
samples
while
vocalizing
into
a
Gesundheit-II,
with
without
at
up
two
visits
days
apart.
quantified
sequenced
viral
RNA,
cultured
virus,
assayed
sera
for
anti-spike
anti-receptor
binding
domain
antibodies.
Results
enrolled
49
seronegative
(mean
post
onset
3.8
±2.1),
May
2020
through
April
2021.
detected
RNA
in
45%
fine
(≤5
µm),
31%
coarse
(>5
µm)
aerosols,
65%
overall
all
from
four
alpha-variant
cases.
Masks
reduced
by
48%
(95%
confidence
interval
[CI],
3
72%)
77%
CI,
51
89%)
aerosols;
cloth
surgical
were
significantly
different.
The
alpha
variant
was
associated
43-fold
6.6
280-fold)
increase
compared
earlier
viruses,
that
remained
significant
18-fold
3.4
92-fold)
adjusting
other
potential
confounders.
Two
samples,
collected
participants
wore
masks,
culture-positive.
Conclusion
is
evolving
toward
more
efficient
generation
loose-fitting
provide
but
only
modest
source
control.
Therefore,
until
vaccination
rates
very
high,
continued
layered
controls
tight-fitting
respirators
will
be
necessary.
Key
Points
Cases
exhale
infectious
aerosols
evolution
favors
generation.
Loose-fitting
moderately
reduce
aerosol.
Ventilation,
filtration,
UV
air
sanitation,
needed
protect
vulnerable
people
public-facing
jobs
indoor
spaces.
Iranian Journal of Microbiology,
Год журнала:
2022,
Номер
unknown
Опубликована: Июнь 20, 2022
Background
and
Objectives:
SARS-CoV-2
variants
of
concern
(VOC)
interest
(VOI)
pose
a
significant
threat
to
pub-
lic
health
because
the
rapid
change
in
genome
can
alter
viral
phenotypes
such
as
virulence,
transmissi-
bility
ability
evade
host
response.
Hence,
quantification
techniques
are
essential
for
timely
diagnosis
follow-up.
Besides,
they
vital
understanding
pathogenesis,
antiviral
evaluation,
vaccine
de-
velopment.
Materials
Methods:
Five
isolates
SARS-CoV-2:
D614G
strain
(B.1),
three
VOC
(Alpha,
Gamma
Delta),
one
VOI
(Mu)
were
used
compare
quantification,
plaque
assay,
median
tissue
culture
infectiousdose
(TCID50)
real-time
RT-PCR.
Results:
Plaque
assay
showed
titers
between
0.15
±
0.01×107
1.95
0.09×107
PFU/mL
while
titer
by
TCID50
was
0.71
0.01×106
4.94
0.80×106
/mL
five
isolates.
The
obtained
calculated
from
assays
differed
0.61
log10,
0.59
log10
0.96
Alfa,
Gamma,
Delta,
Mu
(p≤0.0007),
respectively.
No
differences
observed
strain.
Real-time
PCR
exhibited
ranging
0.39
0.001×108
3.38
0.04×108
RNA
copies/µL
all
variants.
relation
copies/mL
1:29800
strain,
1:11700
Alpha,
1:8930
1:12500
1:2950
Mu.
Conclusion:
comparable
but
not
others
Our
data
demonstrated
correlation
among
E
gene
copies/µL,
units
measure
commonly
quantify
load
diagnostic
research
fields.
results
suggest
that
proportion
infectious
virions
vitro
changes
pending
on
variant,
being
Mu,
variant
reaching
higher
with
fewer
copies.
Scientific Reports,
Год журнала:
2022,
Номер
12(1)
Опубликована: Окт. 26, 2022
The
gold-standard
method
to
evaluate
a
functional
antiviral
immune
response
is
titer
neutralizing
antibodies
(NAbs)
against
viral
pathogen.
This
historically
performed
using
an
in
vitro
assay
of
virus-mediated
infection,
which
requires
BSL-3
facilities.
As
these
are
insufficient
Latin
American
countries,
including
Mexico,
scant
information
obtained
locally
about
pathogens
NAb,
assay.
An
alternative
solution
with
live
virus
use
BSL-2-safe
non-replicative
pseudovirus.
Pseudoviral
particles
can
be
engineered
display
selected
pathogen's
entry
protein
on
their
surface,
and
deliver
reporter
gene
into
target
cells
upon
transduction.
Here
we
comprehensively
describe
the
first
development
BSL-2
safe
NAbs-measuring
based
production
pseudotyped
lentiviral
particles.
proof-of-concept,
Nanoluc
luciferase-mediated
luminescence
measurements
from
transduced
SARS-CoV-2
Spike-pseudotyped
We
applied
optimized
facility
measure
NAbs
65
serum
samples,
evidenced
100%
sensitivity,
86.6%
specificity
96%
accuracy.
Overall,
this
report
pseudovirus-based
developed
Mexico
NAbs,
cornerstone
methodology
necessary
limited
resources
settings.
Viruses,
Год журнала:
2021,
Номер
14(1), С. 23 - 23
Опубликована: Дек. 23, 2021
Severe
Acute
Respiratory
Syndrome
Coronavirus
2
(SARS-CoV-2)
quickly
spread
worldwide
following
its
emergence
in
Wuhan,
China,
and
hit
pandemic
levels.
Its
tremendous
incidence
favoured
the
of
viral
variants.
The
current
genome
diversity
SARS-CoV-2
has
a
clear
impact
on
epidemiology
clinical
practice,
especially
regarding
transmission
rates
effectiveness
vaccines.
In
this
study,
we
evaluated
replication
different
isolates
representing
virus
genotypes
which
have
been
isolated
throughout
pandemic.
We
used
three
distinct
cell
lines,
including
Vero
E6
cells
originating
from
monkeys;
Caco-2
cells,
an
intestinal
epithelium
line
humans;
Calu-3
pulmonary
also
humans.
RT-qPCR
to
replicate
by
quantifying
released
culture
supernatant
infected
cells.
found
that
similarly
but
show
very
replicative
capacities
This
was
highlighted
for
lineages
B.1.1.7,
B.1.351
P.1,
are
considered
be
variants
concern.
These
results
underscore
importance
evaluation
characterisation
each
isolate
order
establish
patterns
before
performing
tests,
consideration
ideal
genotype-cell
type
pair
assay.