Nature Communications,
Год журнала:
2019,
Номер
10(1)
Опубликована: Авг. 21, 2019
Abstract
ZEITLUPE
(ZTL),
a
photoreceptor
with
E3
ubiquitin
ligase
activity,
communicates
end-of-day
light
conditions
to
the
plant
circadian
clock.
It
still
remains
unclear
how
ZTL
protein
accumulates
in
but
does
not
destabilize
target
proteins
before
dusk.
Two
deubiquitylating
enzymes,
UBIQUITIN-SPECIFIC
PROTEASE
12
and
13
(UBP12
UBP13),
which
regulate
clock
period
ubiquitylation
manner
opposite
ZTL,
associate
complex.
Here
we
demonstrate
that
interacting
partner,
GIGANTEA
(GI),
recruits
UBP12
UBP13
We
show
loss
of
reduces
GI
levels
through
post-transcriptional
mechanism.
Furthermore,
is
unable
accumulate
normal
ubp
mutants.
This
demonstrates
complex
contains
both
ubiquitin-conjugating
-deconjugating
these
two
opposing
enzyme
types
are
necessary
for
pacing.
shows
enzymes
core
element
clocks,
conserved
from
plants
animals.
Nature Communications,
Год журнала:
2020,
Номер
11(1)
Опубликована: Сен. 2, 2020
The
glymphatic
system
is
a
network
of
perivascular
spaces
that
promotes
movement
cerebrospinal
fluid
(CSF)
into
the
brain
and
clearance
metabolic
waste.
This
transport
supported
by
water
channel
aquaporin-4
(AQP4)
localized
to
vascular
endfeet
astrocytes.
more
effective
during
sleep,
but
whether
sleep
timing
function
remains
unknown.
We
here
show
influx
exhibit
endogenous,
circadian
rhythms
peaking
mid-rest
phase
mice.
Drainage
CSF
from
cisterna
magna
lymph
nodes
exhibits
daily
variation
opposite
influx,
suggesting
distribution
throughout
animal
depends
on
time-of-day.
polarization
AQP4
highest
rest
loss
eliminates
day-night
difference
in
both
drainage
nodes.
conclude
under
control
supports
this
rhythm.
Neuron,
Год журнала:
2017,
Номер
93(6), С. 1420 - 1435.e5
Опубликована: Март 1, 2017
The
suprachiasmatic
nucleus
(SCN)
of
the
hypothalamus
orchestrates
daily
rhythms
physiology
and
behavior
in
mammals.
Its
circadian
(∼24
hr)
oscillations
gene
expression
electrical
activity
are
generated
intrinsically
can
persist
indefinitely
temporal
isolation.
This
robust
resilient
timekeeping
is
generally
regarded
as
a
product
intrinsic
connectivity
its
neurons.
Here
we
show
that
neurons
constitute
only
one
"half"
SCN
clock,
metabolically
active
during
daytime.
In
contrast,
astrocytes
nighttime,
when
they
suppress
by
regulating
extracellular
glutamate
levels.
glutamatergic
gliotransmission
sensed
dorsal
via
specific
pre-synaptic
NMDA
receptor
assemblies
containing
NR2C
subunits.
Remarkably,
somatic
genetic
re-programming
intracellular
clocks
was
capable
remodeling
behavioral
adult
mice.
Thus,
circuit-level
arises
from
interdependent
mutually
supportive
astrocytic-neuronal
signaling.
Science,
Год журнала:
2019,
Номер
363(6423), С. 187 - 192
Опубликована: Янв. 11, 2019
Circadian
(~24-hour)
rhythms
depend
on
intracellular
transcription-translation
negative
feedback
loops
(TTFLs).
How
these
self-sustained
cellular
clocks
achieve
multicellular
integration
and
thereby
direct
daily
of
behavior
in
animals
is
largely
obscure.
The
suprachiasmatic
nucleus
(SCN)
the
fulcrum
this
pathway
from
gene
to
cell
circuit
mammals.
We
describe
type-specific,
functionally
distinct
TTFLs
neurons
astrocytes
SCN
show
that,
absence
other
clocks,
cell-autonomous
astrocytic
TTFL
alone
can
drive
molecular
oscillations
circadian
mice.
Astrocytic
by
reinstating
clock
expression
function
via
glutamatergic
signals.
Our
results
demonstrate
that
autonomously
initiate
sustain
complex
mammalian
behavior.
Cell,
Год журнала:
2019,
Номер
177(4), С. 896 - 909.e20
Опубликована: Апрель 25, 2019
In
mammals,
endogenous
circadian
clocks
sense
and
respond
to
daily
feeding
lighting
cues,
adjusting
internal
∼24
h
rhythms
resonate
with,
anticipate,
external
cycles
of
day
night.
The
mechanism
underlying
entrainment
time
is
critical
for
understanding
why
mistimed
feeding,
as
occurs
during
shift
work,
disrupts
physiology,
a
state
that
associated
with
increased
incidence
chronic
diseases
such
type
2
(T2)
diabetes.
We
show
feeding-regulated
hormones
insulin
insulin-like
growth
factor
1
(IGF-1)
reset
in
vivo
vitro
by
induction
PERIOD
proteins,
signaling
organization
mouse
behavior
clock
gene
expression.
Insulin
IGF-1
receptor
sufficient
determine
essential
parameters,
principally
via
protein
synthesis.
This
requires
coincident
mechanistic
target
rapamycin
(mTOR)
activation,
phosphoinositide
signaling,
microRNA
downregulation.
Besides
its
well-known
homeostatic
functions,
we
propose
are
primary
signals
cellular
throughout
the
body.
Hundreds
of
human
genes
are
associated
with
neurological
diseases,
but
translation
into
tractable
biological
mechanisms
is
lagging.
Larval
zebrafish
an
attractive
model
to
investigate
genetic
contributions
diseases.
However,
current
CRISPR-Cas9
methods
difficult
apply
large
screens
studying
behavioural
phenotypes.
To
facilitate
rapid
screening,
we
developed
a
simple
sequencing-free
tool
validate
gRNAs
and
highly
effective
method
capable
converting
>90%
injected
embryos
directly
F0
biallelic
knockouts.
We
demonstrate
that
knockouts
reliably
recapitulate
complex
mutant
phenotypes,
such
as
altered
molecular
rhythms
the
circadian
clock,
escape
responses
irritants,
multi-parameter
day-night
locomotor
behaviours.
The
technique
sufficiently
robust
knockout
multiple
in
same
animal,
for
example
create
transparent
triple
crystal
fish
imaging.
Our
cuts
experimental
time
from
gene
phenotype
months
one
week.
Science,
Год журнала:
2023,
Номер
380(6648), С. 972 - 979
Опубликована: Июнь 1, 2023
The
suprachiasmatic
nucleus
(SCN)
drives
circadian
clock
coherence
through
intercellular
coupling,
which
is
resistant
to
environmental
perturbations.
We
report
that
primary
cilia
are
required
for
coupling
among
SCN
neurons
maintain
the
robustness
of
internal
in
mice.
Cilia
neuromedin
S-producing
(NMS)
exhibit
pronounced
rhythmicity
abundance
and
length.
Genetic
ablation
ciliogenesis
NMS
enabled
a
rapid
phase
shift
under
jet-lag
conditions.
rhythms
individual
cilia-deficient
slices
lost
their
after
external
Rhythmic
changes
drive
oscillations
Sonic
Hedgehog
(Shh)
signaling
gene
expression.
Inactivation
Shh
phenocopied
effects
ablation.
Thus,
cilia-Shh
aids
coupling.
PLoS Computational Biology,
Год журнала:
2015,
Номер
11(3), С. e1004094 - e1004094
Опубликована: Март 20, 2015
Robust
methods
for
identifying
patterns
of
expression
in
genome-wide
data
are
important
generating
hypotheses
regarding
gene
function.
To
this
end,
several
analytic
have
been
developed
detecting
periodic
patterns.
We
improve
one
such
method,
JTK_CYCLE,
by
explicitly
calculating
the
null
distribution
that
it
accounts
multiple
hypothesis
testing
and
including
non-sinusoidal
reference
waveforms.
term
method
empirical
JTK_CYCLE
with
asymmetry
search,
we
compare
its
performance
to
Bonferroni
Benjamini-Hochberg
correction,
as
well
five
other
methods:
cyclohedron
test,
address
reduction,
stable
persistence,
ANOVA,
F24.
find
F24,
consistently
outperform
three
when
limited
noisy;
search
gives
greatest
sensitivity
while
controlling
false
discovery
rate.
Our
analysis
also
provides
insight
into
experimental
design
that,
a
fixed
number
samples,
better
specificity
achieved
higher
numbers
replicates
than
sampling
density.
Application
circadian
rhythms
metadataset
microarrays
quantify
time-dependent
whole
heads
Drosophila
melanogaster
reveals
annotations
enriched
among
genes
highly
asymmetric
These
include
wide
range
oxidation
reduction
metabolic
genes,
transcripts
splice
forms.