Predicting survival and immune status of breast cancer patients based on prognostic features related to PANoptosis
Discover Oncology,
Год журнала:
2025,
Номер
16(1)
Опубликована: Апрель 15, 2025
Breast
cancer
(BRCA)
is
a
prevalent
female
malignancy.
PANoptosis,
integrating
diverse
cell
death
traits,
pivotal
in
BRCA,
thus
necessitating
deeper
study.
Data
from
Gene
Expression
Omnibus
(GEO,
GSE180286
and
GSE20685)
The
Cancer
Genome
Atlas
(TCGA)
were
analyzed.
Weighted
gene
co-expression
network
analysis
(WGCNA)
identified
PANoptosis-related
genes
BRCA
patients
TCGA.
Further
refinement
of
these
module
was
conducted
through
univariate
Cox
regression,
LASSO
regression
(glmnet
package),
stepwise
multivariate
to
derive
the
final
biomarkers.
Based
on
biomarkers,
risk
model
established,
in-vitro
experiments
(wound
healing
assay,
Transwell
qRT-PCR)
carried
out
validate
accuracy
MCPcounter
package
oncoPredict
used
assess
immune
infiltration
sensitivity
drugs
patients,
respectively.
This
study
8
biomarkers
(ACY3,
CD83,
CXCL13,
KLHDC7B,
NR1H3,
SMCO4,
TRPM2,
UPP1)
established
model.
In-vitro
revealed
significant
differences
biomarker
expression
between
cells
control
group,
with
TRPM2
knockdown
inhibiting
migration
invasion.
Enrichment
showed
metabolic
pathways
activated
high-risk
group.
Additionally,
lower
enrichment
fibroblasts
Drug
linked
13
RiskScore.
Finally,
single-cell
six
types
(including
stem
cells,
fibroblasts,
T-cells,
macrophages,
B/Plasma
endothelial
cells)
for
found
that
macrophages
had
higher
PANoptosis
activity.
current
research
introduces
novel
prognosis
but
also
provides
fresh
perspective
treatment
strategies.
Язык: Английский
PKMYT1 knockdown inhibits cholesterol biosynthesis and promotes the drug sensitivity of triple-negative breast cancer cells to atorvastatin
PeerJ,
Год журнала:
2024,
Номер
12, С. e17749 - e17749
Опубликована: Июль 12, 2024
Triple
negative
breast
cancer
(TNBC)
as
the
most
aggressive
molecular
subtype
of
is
characterized
by
high
cell
proliferation
and
poor
patient
prognosis.
Abnormal
lipid
metabolism
contributes
to
malignant
process
cancers.
Study
observed
significantly
enhanced
cholesterol
biosynthesis
in
TNBC.
However,
mechanisms
underlying
abnormal
increase
TNBC
are
still
unclear.
Hence,
we
identified
a
member
serine/threonine
protein
kinase
family
PKMYT1
key
driver
synthesis
cells.
Aberrantly
high-expressed
was
indicative
unfavorable
prognostic
outcomes.
In
addition,
promoted
sterol
regulatory
element-binding
2
(SREBP2)-mediated
expression
enzymes
related
through
activating
TNF/
TNF
receptor-associated
factor
1
(TRAF1)/AKT
pathway.
Notably,
downregulation
inhibited
feedback
upregulation
statin-mediated
biosynthesis,
whereas
knockdown
drug
sensitivity
atorvastatin
Overall,
our
study
revealed
novel
function
providing
new
target
for
targeting
tumor
metabolic
reprogramming
cancer.
Язык: Английский