An effective machine learning approach for predicting ecosystem CO2 assimilation across space and time
Опубликована: Сен. 5, 2023
Abstract.
Accurate
predictions
of
environmental
controls
on
ecosystem
photosynthesis
are
essential
for
understanding
the
impacts
climate
change
and
extreme
events
carbon
cycle
provisioning
services.
Using
time-series
measurements
fluxes
paired
with
meteorological
variables
from
a
network
globally
distributed
sites
remotely
sensed
vegetation
indices,
we
train
recurrent
deep
neural
(Long-Short-Term
Memory,
LSTM),
simple
(DNN),
mechanistic,
theory-based
model
aim
to
predict
gross
primary
production
(GPP).
We
test
these
models'
ability
spatially
temporally
generalise
across
wide
range
conditions.
Both
models
outperform
considering
leave-site-out
cross-validation
(LSOCV).
The
LSTM
performs
best
achieves
mean
R2
0.78
in
LSOCV
an
average
0.82
relatively
moist
temperate
boreal
sites.
This
suggests
that
networks
provide
basis
robust
data-driven
modelling
respective
biomes.
However,
limits
global
upscaling
identified
using
by
types
continents.
In
particular,
our
performance
is
weakest
at
arid
where
unknown
exposure
water
limitation
reliability.
Язык: Английский
Comment on egusphere-2024-276
Опубликована: Апрель 2, 2024
Biomes
and
their
biogeographic
patterns
have
been
derived
from
a
large
variety
of
variables
including
species
distributions,
bioclimate
or
remote
sensing
products.
Yet,
whether
plant
trait
data
are
suitable
for
biome
classification
has
rarely
tested.
Here,
we
aimed
to
assess
systematically
which
traits
most
classification.
We
33
different
by
combining
crowd-sourced
distribution
the
TRY
database.
Using
supervised
cluster
analyses,
developed
schemes
using
these
31
maps.
A
sensitivity
analysis
with
randomly
sampled
combinations
was
performed
identify
maps
that
appropriate
achieved
highest
data-model
agreement.
Due
gaps
in
data,
models
were
used
obtain
at
global
scale.
showed
can
be
conduit
density,
rooting
depth,
height,
leaf
traits,
specific
area
nitrogen.
Data-model
agreement
maximized
when
inform
analyses
based
on
zonation
contrast
optical
reflectance.
The
availability
is
heterogeneous
prevalent.
Nonetheless,
it
possible
derive
predict
good
Filling
essential
further
improve
trait-based
Язык: Английский
Comment on egusphere-2024-276
Опубликована: Апрель 17, 2024
Biomes
and
their
biogeographic
patterns
have
been
derived
from
a
large
variety
of
variables
including
species
distributions,
bioclimate
or
remote
sensing
products.
Yet,
whether
plant
trait
data
are
suitable
for
biome
classification
has
rarely
tested.
Here,
we
aimed
to
assess
systematically
which
traits
most
classification.
We
33
different
by
combining
crowd-sourced
distribution
the
TRY
database.
Using
supervised
cluster
analyses,
developed
schemes
using
these
31
maps.
A
sensitivity
analysis
with
randomly
sampled
combinations
was
performed
identify
maps
that
appropriate
achieved
highest
data-model
agreement.
Due
gaps
in
data,
models
were
used
obtain
at
global
scale.
showed
can
be
conduit
density,
rooting
depth,
height,
leaf
traits,
specific
area
nitrogen.
Data-model
agreement
maximized
when
inform
analyses
based
on
zonation
contrast
optical
reflectance.
The
availability
is
heterogeneous
prevalent.
Nonetheless,
it
possible
derive
predict
good
Filling
essential
further
improve
trait-based
Язык: Английский
Comment on egusphere-2024-276
Опубликована: Апрель 18, 2024
Biomes
and
their
biogeographic
patterns
have
been
derived
from
a
large
variety
of
variables
including
species
distributions,
bioclimate
or
remote
sensing
products.
Yet,
whether
plant
trait
data
are
suitable
for
biome
classification
has
rarely
tested.
Here,
we
aimed
to
assess
systematically
which
traits
most
classification.
We
33
different
by
combining
crowd-sourced
distribution
the
TRY
database.
Using
supervised
cluster
analyses,
developed
schemes
using
these
31
maps.
A
sensitivity
analysis
with
randomly
sampled
combinations
was
performed
identify
maps
that
appropriate
achieved
highest
data-model
agreement.
Due
gaps
in
data,
models
were
used
obtain
at
global
scale.
showed
can
be
conduit
density,
rooting
depth,
height,
leaf
traits,
specific
area
nitrogen.
Data-model
agreement
maximized
when
inform
analyses
based
on
zonation
contrast
optical
reflectance.
The
availability
is
heterogeneous
prevalent.
Nonetheless,
it
possible
derive
predict
good
Filling
essential
further
improve
trait-based
Язык: Английский
Reply on CC1
Опубликована: Май 7, 2024
Biomes
and
their
biogeographic
patterns
have
been
derived
from
a
large
variety
of
variables
including
species
distributions,
bioclimate
or
remote
sensing
products.
Yet,
whether
plant
trait
data
are
suitable
for
biome
classification
has
rarely
tested.
Here,
we
aimed
to
assess
systematically
which
traits
most
classification.
We
33
different
by
combining
crowd-sourced
distribution
the
TRY
database.
Using
supervised
cluster
analyses,
developed
schemes
using
these
31
maps.
A
sensitivity
analysis
with
randomly
sampled
combinations
was
performed
identify
maps
that
appropriate
achieved
highest
data-model
agreement.
Due
gaps
in
data,
models
were
used
obtain
at
global
scale.
showed
can
be
conduit
density,
rooting
depth,
height,
leaf
traits,
specific
area
nitrogen.
Data-model
agreement
maximized
when
inform
analyses
based
on
zonation
contrast
optical
reflectance.
The
availability
is
heterogeneous
prevalent.
Nonetheless,
it
possible
derive
predict
good
Filling
essential
further
improve
trait-based
Язык: Английский
Reply on RC1
Опубликована: Май 7, 2024
Biomes
and
their
biogeographic
patterns
have
been
derived
from
a
large
variety
of
variables
including
species
distributions,
bioclimate
or
remote
sensing
products.
Yet,
whether
plant
trait
data
are
suitable
for
biome
classification
has
rarely
tested.
Here,
we
aimed
to
assess
systematically
which
traits
most
classification.
We
33
different
by
combining
crowd-sourced
distribution
the
TRY
database.
Using
supervised
cluster
analyses,
developed
schemes
using
these
31
maps.
A
sensitivity
analysis
with
randomly
sampled
combinations
was
performed
identify
maps
that
appropriate
achieved
highest
data-model
agreement.
Due
gaps
in
data,
models
were
used
obtain
at
global
scale.
showed
can
be
conduit
density,
rooting
depth,
height,
leaf
traits,
specific
area
nitrogen.
Data-model
agreement
maximized
when
inform
analyses
based
on
zonation
contrast
optical
reflectance.
The
availability
is
heterogeneous
prevalent.
Nonetheless,
it
possible
derive
predict
good
Filling
essential
further
improve
trait-based
Язык: Английский
Reply on RC2
Опубликована: Май 7, 2024
Biomes
and
their
biogeographic
patterns
have
been
derived
from
a
large
variety
of
variables
including
species
distributions,
bioclimate
or
remote
sensing
products.
Yet,
whether
plant
trait
data
are
suitable
for
biome
classification
has
rarely
tested.
Here,
we
aimed
to
assess
systematically
which
traits
most
classification.
We
33
different
by
combining
crowd-sourced
distribution
the
TRY
database.
Using
supervised
cluster
analyses,
developed
schemes
using
these
31
maps.
A
sensitivity
analysis
with
randomly
sampled
combinations
was
performed
identify
maps
that
appropriate
achieved
highest
data-model
agreement.
Due
gaps
in
data,
models
were
used
obtain
at
global
scale.
showed
can
be
conduit
density,
rooting
depth,
height,
leaf
traits,
specific
area
nitrogen.
Data-model
agreement
maximized
when
inform
analyses
based
on
zonation
contrast
optical
reflectance.
The
availability
is
heterogeneous
prevalent.
Nonetheless,
it
possible
derive
predict
good
Filling
essential
further
improve
trait-based
Язык: Английский
Comment on egusphere-2023-1826 - Peer review halted
Опубликована: Дек. 14, 2023
Accurate
predictions
of
environmental
controls
on
ecosystem
photosynthesis
are
essential
for
understanding
the
impacts
climate
change
and
extreme
events
carbon
cycle
provisioning
services.
Using
time-series
measurements
fluxes
paired
with
meteorological
variables
from
a
network
globally
distributed
sites
remotely
sensed
vegetation
indices,
we
train
recurrent
deep
neural
(Long-Short-Term
Memory,
LSTM),
simple
(DNN),
mechanistic,
theory-based
model
aim
to
predict
gross
primary
production
(GPP).
We
test
these
models'
ability
spatially
temporally
generalise
across
wide
range
conditions.
Both
models
outperform
considering
leave-site-out
cross-validation
(LSOCV).
The
LSTM
performs
best
achieves
mean
R2
0.78
in
LSOCV
an
average
0.82
relatively
moist
temperate
boreal
sites.
This
suggests
that
networks
provide
basis
robust
data-driven
modelling
respective
biomes.
However,
limits
global
upscaling
identified
using
by
types
continents.
In
particular,
our
performance
is
weakest
at
arid
where
unknown
exposure
water
limitation
reliability.
Язык: Английский
Comment on egusphere-2023-1826
Опубликована: Ноя. 6, 2023
Accurate
predictions
of
environmental
controls
on
ecosystem
photosynthesis
are
essential
for
understanding
the
impacts
climate
change
and
extreme
events
carbon
cycle
provisioning
services.
Using
time-series
measurements
fluxes
paired
with
meteorological
variables
from
a
network
globally
distributed
sites
remotely
sensed
vegetation
indices,
we
train
recurrent
deep
neural
(Long-Short-Term
Memory,
LSTM),
simple
(DNN),
mechanistic,
theory-based
model
aim
to
predict
gross
primary
production
(GPP).
We
test
these
models'
ability
spatially
temporally
generalise
across
wide
range
conditions.
Both
models
outperform
considering
leave-site-out
cross-validation
(LSOCV).
The
LSTM
performs
best
achieves
mean
R2
0.78
in
LSOCV
an
average
0.82
relatively
moist
temperate
boreal
sites.
This
suggests
that
networks
provide
basis
robust
data-driven
modelling
respective
biomes.
However,
limits
global
upscaling
identified
using
by
types
continents.
In
particular,
our
performance
is
weakest
at
arid
where
unknown
exposure
water
limitation
reliability.
Язык: Английский