bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2025,
Номер
unknown
Опубликована: Янв. 3, 2025
Abstract
Hereditary
ataxias
are
a
heterogeneous
group
of
neurogenetic
conditions
characterised
by
the
clinical
syndrome
progressive
loss
coordination
from
neurodegeneration
cerebellum.
A
commonality
across
most
prevalent
is
underlying
disease
mechanism
secondary
to
expansions
short
tandem
DNA
repeats.
There
currently
an
incomplete
understanding
pathogenic
mechanisms
these
repeat
expansion
disorders,
core
feature
which
revolves
around
RNA-dysregulation.
In
this
study,
we
used
both
bulk
and
single
nuclear
RNA-sequencing
study
post-mortem
brain
tissue
human
donors
with
range
repeat-expansion
reveal
further
mechanistic
insights.
We
compared
paired
cerebellar
frontal
cortex
data
23
ataxia
patients
22
sex-,
age-matched
controls
two
banks
(spinocerebellar
(SCA)1,
SCA2,
SCA6,
SCA7,
SCA17,
Friedreich’s
(FRDA),
7
cases
unknown
molecular
diagnoses).
analysed
for
transcript
usage,
differential
cell-type-specific
expression
transcriptomically
profile
diseases.
also
generated
cerebellum
SCA1,
SCA6
FRDA
decipher
changes
in
cell
type
proportions
state.
Using
approach,
found
that:
(i)
despite
commonalities
genetics
ataxia,
there
were
components
their
transcriptional
signatures
distinct;
(ii)
extensive
evident
not
only
but
cases;
(iii)
activation
immune
inflammatory
pathways,
as
well
involvement
non-neuronal
types
was
all
lesser
or
greater
extent.
This
provides
novel
resource
understand
ataxia.
Furthermore,
taken
together,
results
highlight
pathways
role
early
potentially
important
therapeutic
targets.
These
findings
provide
map
transcriptomic
pathogenesis.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Май 20, 2024
Abstract
Huntington
Disease
(HD)
is
a
fatal
genetic
disease
in
which
most
striatal
projection
neurons
(SPNs)
degenerate.
The
central
biological
question
about
HD
pathogenesis
has
been
how
the
disease-causing
DNA
repeat
expansion
(CAG
n
)
huntingtin
(
HTT
gene
leads
to
neurodegeneration
after
decades
of
apparent
latency.
Inherited
alleles
with
longer
CAG
hasten
onset;
length
this
also
changes
over
time,
generating
somatic
mosaicism,
and
genes
that
regulate
DNA-repeat
stability
can
influence
age-at-onset.
To
understand
relationship
between
cell’s
CAG-repeat
its
state,
we
developed
single-cell
method
for
measuring
together
genome-wide
RNA
expression.
We
found
expands
from
40-45
CAGs
100-500+
HD-vulnerable
SPNs
but
not
other
cell
types,
these
long
expansions
acquired
at
different
times
by
individual
SPNs.
Surprisingly,
40
150
had
no
effect
upon
expression
–
150-500+
shared
profound
gene-expression
changes.
These
involved
hundreds
genes,
escalated
alongside
further
expansion,
eroded
positive
then
negative
features
neuronal
identity,
culminated
senescence/apoptosis
genes.
Rates
neuron
loss
across
stages
reflected
rates
entered
biologically
distorted
state.
Our
results
suggest
repeats
undergo
quiet
then,
as
they
asynchronously
cross
high
threshold,
cause
degenerate
quickly
asynchronously.
conclude
that,
any
moment
course
HD,
have
an
innocuous
(but
unstable)
gene,
process
almost
all
neuron’s
life.
Brain,
Год журнала:
2024,
Номер
147(5), С. 1784 - 1798
Опубликована: Фев. 22, 2024
The
Huntington's
disease
mutation
is
a
CAG
repeat
expansion
in
the
huntingtin
gene
that
results
an
expanded
polyglutamine
tract
protein.
unstable
and
expansions
of
hundreds
CAGs
have
been
detected
post-mortem
brains.
age
onset
can
be
predicted
partially
from
length
as
measured
blood.
Onset
also
determined
by
genetic
modifiers,
which
six
cases
involve
variation
DNA
mismatch
repair
pathways
genes.
Knocking-out
specific
genes
mouse
models
prevents
somatic
expansion.
Taken
together,
these
led
to
hypothesis
brains
required
for
pathogenesis.
Therefore,
pathogenic
threshold
brain
longer
than
(CAG)40,
blood,
currently
unknown.
MSH3
has
become
major
focus
therapeutic
development,
unlike
other
genes,
nullizygosity
does
not
cause
malignancies
associated
with
deficiency.
Potential
treatments
targeting
under
development
include
therapy,
biologics
small
molecules,
will
assessed
efficacy
disease.
zQ175
knock-in
model
carries
approximately
(CAG)185
develops
early
molecular
pathological
phenotypes
extensively
characterized.
we
crossed
mutant
allele
onto
heterozygous
homozygous
Msh3
knockout
backgrounds
determine
maximum
benefit
this
model.
Ablation
prevented
throughout
periphery,
reduction
50%
decreased
rate
This
had
no
effect
on
deposition
aggregation
nuclei
striatal
neurons,
nor
dysregulated
transcriptional
profile.
contrasts
ablating
shorter
expansions.
further
neurons
accelerate
neuropathological
phenotypes.
It
striking
highly
repeats
similar
size
humans
before
2
years
age,
indicating
Given
trajectory
carriers
unknown,
our
study
underlines
importance
administering
instability
possible.
Journal of Huntington s Disease,
Год журнала:
2021,
Номер
10(1), С. 123 - 148
Опубликована: Фев. 9, 2021
At
fifteen
different
genomic
locations,
the
expansion
of
a
CAG/CTG
repeat
causes
neurodegenerative
or
neuromuscular
disease,
most
common
being
Huntington’s
disease
and
myotonic
dystrophy
type
1.
These
disorders
are
characterized
by
germline
somatic
instability
causative
mutations.
Repeat
lengthening,
expansion,
in
leads
to
an
earlier
age
onset
more
severe
symptoms
next
generation.
In
cells,
is
thought
precipitate
rate
disease.
The
mechanisms
underlying
not
well
understood.
Here
we
review
mammalian
model
systems
that
have
been
used
study
instability,
modifiers
identified
these
systems.
Mouse
models
demonstrated
prominent
roles
for
proteins
mismatch
repair
pathway
as
critical
drivers
which
also
suggested
recent
genome-wide
association
studies
humans.
We
draw
attention
network
connections
between
across
several
might
indicate
crosstalk
context
could
provide
hypotheses
further
validation
discovery.
Overall,
data
dynamics
be
modulated
altering
levels
DNA
metabolic
proteins,
their
regulation,
interaction
with
chromatin,
direct
perturbation
tract.
Applying
novel
methodologies
technologies
this
exciting
area
research
will
needed
gain
deeper
mechanistic
insight
can
harnessed
therapies
aimed
at
preventing
promoting
contraction.
Recent
work
on
Huntington
disease
(HD)
suggests
that
somatic
instability
of
CAG
repeat
tracts,
which
can
expand
into
the
hundreds
in
neurons,
explains
clinical
outcomes
better
than
length
inherited
allele.
Here,
we
measured
expansion
blood
samples
collected
from
same
50
HD
mutation
carriers
over
a
twenty-year
period,
along
with
post-mortem
tissue
15
adults
and
7
fetal
carriers,
to
examine
expansions
at
different
stages
life.
Post-mortem
brains,
as
previously
reported,
had
greatest
expansions,
but
cortex
virtually
none.
Somatic
increased
age,
despite
cells
being
short-lived
compared
was
driven
mostly
by
length,
then
age
sampling
interaction
between
these
two
variables.
Expansion
rates
were
higher
symptomatic
subjects.
These
data
lend
support
proposed
computational
model
instability-driven
disease.
Nature Communications,
Год журнала:
2024,
Номер
15(1)
Опубликована: Апрель 12, 2024
Abstract
Huntington’s
disease
(HD)
is
a
dominant
neurological
disorder
caused
by
an
expanded
HTT
exon
1
CAG
repeat
that
lengthens
huntingtin’s
polyglutamine
tract.
Lowering
mutant
huntingtin
has
been
proposed
for
treating
HD,
but
genetic
modifiers
implicate
somatic
expansion
as
the
driver
of
onset.
We
find
branaplam
and
risdiplam,
small
molecule
splice
modulators
lower
promoting
pseudoexon
inclusion,
also
decrease
unstable
in
engineered
cell
model.
Targeted
CRISPR-Cas9
editing
shows
this
effect
not
due
to
lowering,
pointing
instead
inclusion
PMS1
.
Homozygous
heterozygous
inactivation
reduces
expansion,
supporting
modifier
HD
potential
target
therapeutic
intervention.
Although
modulation
provides
one
strategy,
genome-wide
transcriptomics
emphasize
consideration
cell-type
specific
effects
polymorphic
variation
at
both
off-target
sites.
The American Journal of Human Genetics,
Год журнала:
2024,
Номер
111(6), С. 1165 - 1183
Опубликована: Май 14, 2024
The
pathological
huntingtin
(HTT)
trinucleotide
repeat
underlying
Huntington
disease
(HD)
continues
to
expand
throughout
life.
Repeat
length
correlates
both
with
earlier
age
at
onset
(AaO)
and
faster
progression,
making
slowing
its
expansion
an
attractive
therapeutic
approach.
Genome-wide
association
studies
have
identified
candidate
variants
associated
altered
AaO
many
found
in
DNA
mismatch
repair
(MMR)-associated
genes.
We
examine
whether
lowering
expression
of
these
genes
affects
the
rate
human
ex
vivo
models
using
HD
iPSCs
iPSC-derived
striatal
medium
spiny
neuron-enriched
cultures.
generated
a
stable
CRISPR
interference
iPSC
line
which
we
can
specifically
efficiently
lower
gene
from
donor
carrying
over
125
CAG
repeats.
Lowering
each
member
MMR
complexes
MutS
(MSH2,
MSH3,
MSH6),
MutL
(MLH1,
PMS1,
PMS2,
MLH3),
LIG1
resulted
characteristic
deficiencies.
Reduced
MSH2,
MLH1
slowed
largest
degree,
while
either
or
MLH3
it
lesser
degree.
These
effects
were
recapitulated
cultures
where
factor
was
lowered.
CRISPRi-mediated
key
levels
feasibly
achievable
by
current
approaches
able
effectively
slow
HTT
tract.
highlight
members
family
as
potential
targets
pathogenic
aim
delay
progression
potentially
other
disorders
exhibiting
somatic
instability.
The American Journal of Human Genetics,
Год журнала:
2024,
Номер
111(5), С. 913 - 926
Опубликована: Апрель 15, 2024
Expanded
CAG
repeats
in
coding
regions
of
different
genes
are
the
most
common
cause
dominantly
inherited
spinocerebellar
ataxias
(SCAs).
These
unstable
through
germline,
and
larger
lead
to
earlier
onset.
We
measured
somatic
expansion
blood
samples
collected
from
30
SCA1,
50
SCA2,
74
SCA3,
SCA7
individuals
over
a
mean
interval
8.5
years,
along
with
postmortem
tissues
fetal
examine
at
stages
life.
showed
that
mosaicism
increases
time.
Expansion
levels
significantly
among
SCAs
correlate
repeat
lengths.
The
level
is
greater
who
manifest
disease
compared
those
do
not
yet
display
symptoms.
Brain
SCA
have
expansions
blood.
cerebellum
has
lowest
studied
brain
regions,
high
expression
ATXNs
DNA
repair
genes.
This
was
opposite
cortices,
highest
lower
Fetal
cortices
did
show
instability.
study
shows
increasingly
during
life
individuals,
gene-
tissue-specific
patterns.