bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2022,
Номер
unknown
Опубликована: Май 4, 2022
Abstract
Background
Limb
buds
develop
as
bilateral
outgrowths
of
the
lateral
plate
mesoderm
and
are
patterned
along
three
axes.
Current
models
proximal
to
distal
patterning
early
amniote
limb
suggest
that
two
signals,
a
organising
signal
from
apical
epithelial
ridge
(AER,
Fgfs)
an
opposing
(retinoic
acid)
act
on
pattern
this
axis.
Results
Transcriptional
analysis
stage
51
Xenopus
laevis
hindlimb
sectioned
proximal-distal
axis,
showed
region
is
distinct
rest
limb.
Expression
capn8
.
3
,
novel
calpain,
was
located
in
cells
immediately
flanking
AER.
The
Wnt
antagonist
Dkk1
AER-specific
limbs.
Two
transcription
factors,
sall1
zic5
were
expressed
mesenchyme.
Zic
5
has
no
described
association
with
development.
We
also
describe
expression
genes,
gata5
tnn
not
previously
associated
Differentially
genes
Fgf,
retinoic
acid
(RA)
signalling
well
differential
cell
adhesion
proliferation.
Conclusions
identify
new
candidate
for
proximodistal
patterning.
Our
RA-regulated
supports
role
transient
RA
gradients
bud
proximal-to-distal
anamniote
model
organism.
Developmental Cell,
Год журнала:
2023,
Номер
58(22), С. 2416 - 2427.e7
Опубликована: Окт. 24, 2023
Axolotl
limb
regeneration
is
accompanied
by
the
transient
induction
of
cellular
senescence
within
blastema,
structure
that
nucleates
regeneration.
The
precise
role
this
blastemal
senescent
cell
(bSC)
population,
however,
remains
unknown.
Here,
through
a
combination
gain-
and
loss-of-function
assays,
we
elucidate
functions
molecular
features
in
vivo.
We
demonstrate
plays
positive
during
axolotl
creating
pro-proliferative
niche
supports
progenitor
expansion
blastema
outgrowth.
Senescent
cells
impact
their
microenvironment
via
Wnt
pathway
modulation.
Further,
identify
link
between
signaling
propose
bSC-derived
signals
facilitate
proliferation
neighboring
part
preventing
into
senescence.
This
work
defines
roles
complex
structures.
Frontiers in Cell and Developmental Biology,
Год журнала:
2023,
Номер
11
Опубликована: Авг. 11, 2023
Throughout
the
animal
kingdom
regenerative
ability
varies
greatly
from
species
to
species,
and
even
tissue
within
same
organism.
The
sheer
diversity
of
structures
mechanisms
renders
a
thorough
comparison
molecular
processes
truly
daunting.
Are
“blastemas”
found
in
organisms
as
distantly
related
planarians
axolotls
derived
ancestral
process,
or
did
they
arise
convergently
independently?
Is
mouse
digit
tip
blastema
orthologous
salamander
limb
blastema?
In
other
fields,
characterization
reference
model
has
facilitated
these
comparisons.
For
example,
amphibian
Spemann-Mangold
organizer
served
an
amazingly
useful
comparative
template
field
developmental
biology,
allowing
researchers
draw
analogies
between
which
are
superficially
quite
different.
may
serve
best
starting
point
for
analysis
regeneration,
it
been
characterized
by
over
200
years
research
is
supported
growing
arsenal
tools.
anatomical
evolutionary
closeness
human
also
add
value
translational
therapeutic
standpoint.
Tracing
origins
blastema,
its
relatedness
throughout
kingdom,
will
both
enhance
our
basic
biological
understanding
regeneration
inform
selection
systems.
Nature Communications,
Год журнала:
2023,
Номер
14(1)
Опубликована: Окт. 10, 2023
Humans
and
other
tetrapods
are
considered
to
require
apical-ectodermal-ridge
(AER)
cells
for
limb
development,
AER-like
suggested
be
re-formed
initiate
regeneration.
Paradoxically,
the
presence
of
AER
in
axolotl,
a
primary
model
organism
regeneration,
remains
controversial.
Here,
by
leveraging
single-cell
transcriptomics-based
multi-species
atlas,
composed
human,
mouse,
chicken,
frog
cells,
we
first
establish
that
axolotls
contain
with
characteristics.
Further
analyses
spatial
transcriptomics
reveal
axolotl
limbs
do
not
fully
re-form
during
Moreover,
mesoderm
displays
part
machinery,
revealing
program
(re)growth.
These
results
clarify
debate
about
extent
which
developmental
is
recapitulated
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2025,
Номер
unknown
Опубликована: Март 18, 2025
The
regenerative
potential
of
animals
varies
widely,
even
among
closely-related
species.
In
a
comparative
study
regeneration
across
the
Hydra
genus,
we
found
that
while
most
species
exhibit
robust
whole-body
regeneration,
oligactis
and
other
members
Oligactis
clade
consistently
fail
to
regenerate
their
feet.
To
investigate
mechanisms
underlying
this
deficiency,
analyzed
transcriptional
responses
during
head
foot
in
H.
.
Our
analysis
revealed
general
injury
response
lacks
activation
Wnt
signaling,
pathway
essential
for
vulgaris
regeneration.
Notably,
transient
treatment
with
agonist
triggered
foot-specific
program,
successfully
rescuing
profiling
also
dlx2
as
likely
high-level
regulator
dependent
on
signaling
activation.
establishes
framework
understanding
molecular
basis
its
evolutionary
loss
PLoS ONE,
Год журнала:
2025,
Номер
20(5), С. e0323196 - e0323196
Опубликована: Май 14, 2025
In
this
study,
we
present
an
updated
transcriptome
assembly
for
the
Iberian
ribbed
newt,
Pleurodeles
waltl
(
P.
),
a
widely
used
model
organism
in
regeneration
research.
The
existing
publicly
available
species
is
limited
by
inclusion
of
only
three
libraries
from
limb
and
two
heart,
tissues
particular
interest
studies.
Additionally,
previous
annotation
was
limited,
reducing
utility
dataset
further
in-depth
To
provide
more
complete
with
comprehensive
annotation,
utilized
58
previously
published
9
newly
sequenced
libraries,
expanding
transcriptomic
data
key
tissues,
especially
heart
tissues.
Our
assessment
demonstrates
that
new
offers
representation
reads
proteins
compared
to
versions.
Furthermore,
significantly
improved
functional
using
Trinotate
pipeline,
which
includes
identification
ORFs,
Pfam
motifs,
gene
names,
GO
terms,
KEGG
Orthology,
facilitating
robust
analyses.
We
also
examined
various
stages
development,
gaining
insights
into
signaling
pathways
involved.
This
work
provides
valuable
resource
researchers
investigating
molecular
mechanisms
underlying
waltl’s
regenerative
abilities,
enabling
detailed
expression
studies
broader
biological
insights.
Proceedings of the National Academy of Sciences,
Год журнала:
2024,
Номер
121(11)
Опубликована: Март 5, 2024
In
amniote
limbs,
Fibroblast
Growth
Factor
10
(FGF10)
is
essential
for
limb
development,
but
whether
this
function
broadly
conserved
in
tetrapods
and/or
involved
adult
regeneration
remains
unknown.
To
tackle
question,
we
established
Fgf10
mutant
lines
the
newt
Pleurodeles
waltl
which
has
amazing
regenerative
ability.
While
forelimbs
develop
normally,
hindlimbs
fail
to
and
downregulate
FGF
target
genes.
Despite
these
developmental
defects,
mutants
were
able
regenerate
normal
rather
than
recapitulating
embryonic
phenotype.
Together,
our
results
demonstrate
an
important
role
FGF10
hindlimb
formation,
little
or
no
regeneration,
suggesting
that
different
mechanisms
operate
during
versus
development.
Communications Biology,
Год журнала:
2023,
Номер
6(1)
Опубликована: Ноя. 9, 2023
Abstract
The
potential
for
basic
research
to
uncover
the
inner
workings
of
regenerative
processes
and
produce
meaningful
medical
therapies
has
inspired
scientists,
clinicians,
patients
hundreds
years.
Decades
studies
using
a
handful
highly
model
organisms
have
significantly
advanced
our
knowledge
key
cell
types
molecular
pathways
involved
in
regeneration.
However,
many
questions
remain
about
how
unfold
regeneration-competent
species,
they
are
curtailed
non-regenerative
organisms,
might
be
induced
(or
restored)
humans.
Recent
technological
advances
genomics,
biology,
computer
science,
bioengineering,
stem
hold
promise
collectively
provide
new
experimental
evidence
different
accomplish
process
In
theory,
this
should
inform
design
clinical
approaches
medicine.
A
deeper
understanding
tissues
organs
regenerate
will
also
undoubtedly
impact
adjacent
scientific
fields.
To
best
apply
adapt
these
technologies
ways
that
break
long-standing
barriers
answer
critical
regeneration,
we
must
combine
deep
developmental
evolutionary
biologists
with
hard-earned
expertise
scientists
mechanistic
technical
end,
perspective
is
based
on
conversations
from
workshop
organized
at
Banbury
Center,
during
which
diverse
cross-section
regeneration
community
experts
various
discussed
enduring
biology.
Here,
share
group
identified
as
significant
unanswered,
i.e.,
known
unknowns.
We
describe
obstacles
limiting
progress
answering
expanding
number
diversity
used
essential
deepening
capacity.
Finally,
propose
investigating
problems
collaboratively
across
network
researchers
advance
field
unexpected
insights
into
important
related
areas
biology
International Journal of Molecular Sciences,
Год журнала:
2024,
Номер
25(22), С. 11904 - 11904
Опубликована: Ноя. 6, 2024
Despite
significant
improvements
in
the
comprehension
of
neuro-regeneration,
restoring
nerve
injury
humans
continues
to
pose
a
substantial
therapeutic
difficulty.
In
peripheral
nervous
system
(PNS),
regeneration
process
after
relies
on
Schwann
cells.
These
cells
play
crucial
role
regulating
and
releasing
different
extracellular
matrix
proteins,
including
laminin
fibronectin,
which
are
essential
for
facilitating
regeneration.
However,
during
regeneration,
is
required
regenerate
long
distance
and,
subsequently,
loses
its
capacity
facilitate
this
progression.
Meanwhile,
it
has
been
noted
that
limited
capabilities
central
(CNS)
compared
PNS.
The
CNS
contains
factors
impede
axons
following
axons.
presence
glial
scar
formation
results
from
unfavourable
condition,
where
accumulate
at
site,
generating
physical
chemical
barrier
hinders
neurons.
contrast
humans,
several
species,
such
as
axolotls,
polychaetes,
planarians,
possess
ability
their
neural
systems
amputation.
This
based
vast
amount
pluripotent
stem
have
remarkable
differentiate
develop
into
any
cell
within
body.
Although
also
these
cells,
numbers
extremely
limited.
Examining
molecular
pathways
exhibited
by
organisms
potential
offer
foundational
understanding
human
process.
review
provides
concise
overview
involved
axolotl,
polychaete,
planarian
neuro-regeneration.
It
new
perspective
approaches
neuro-regeneration
humans.
Frontiers in Cell and Developmental Biology,
Год журнала:
2022,
Номер
10
Опубликована: Авг. 26, 2022
Introduction:
Reactive
oxygen
species
(ROS)
represent
molecules
of
great
interest
in
the
field
regenerative
biology
since
several
animal
models
require
their
production
to
promote
and
favor
tissue,
organ,
appendage
regeneration.
Recently,
it
has
been
shown
that
ROS
such
as
hydrogen
peroxide
(H2O2)
is
required
for
tail
regeneration
Ambystoma
mexicanum.
However,
date,
unknown
whether
necessary
limb
this
model.
Methods:
forelimbs
juvenile
animals
were
amputated
proximally
dynamics
was
determined
using
2'7-
dichlorofluorescein
diacetate
(DCFDA)
during
process.
Inhibition
performed
NADPH
oxidase
inhibitor
apocynin.
Subsequently,
a
rescue
assay
exogenous
(H2O2).
The
effect
these
treatments
on
size
skeletal
structures
regenerated
evaluated
by
staining
with
alcian
blue
alizarin
red,
well
blastema
formation,
cell
proliferation,
immune
recruitment,
expression
genes
related
proximal-distal
identity.
Results:
our
results
show
inhibition
post-amputation
A.
mexicanum
salamander
model
miniature
significant
reduction
elements
ulna,
radius,
overall
autopod.
Additionally,
other
effects
decrease
number
carpals,
defective
joint
morphology,
failure
integrity
between
structure
remaining
tissue
identified.
In
addition,
treatment
affected
formation
induced
levels
proliferation
structure,
CD45+
CD11b
+
system
cells.
On
hand,
blocking
proximo-distal
identity
Aldha1a1,
Rarβ,
Prod1,
Meis1,
Hoxa13,
Agr2
Yap1
early/mid
blastema.
Of
interest,
alterations,
rescued
application
H2O2,
suggesting
ROS/H2O2
from
early
stages
proper
patterning
limb.