Gene expression analysis of the Xenopus laevis early limb bud proximodistal axis DOI Creative Commons

Daniel T. Hudson,

Jessica S. Bromell,

R. C. Day

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2022, Номер unknown

Опубликована: Май 4, 2022

Abstract Background Limb buds develop as bilateral outgrowths of the lateral plate mesoderm and are patterned along three axes. Current models proximal to distal patterning early amniote limb suggest that two signals, a organising signal from apical epithelial ridge (AER, Fgfs) an opposing (retinoic acid) act on pattern this axis. Results Transcriptional analysis stage 51 Xenopus laevis hindlimb sectioned proximal-distal axis, showed region is distinct rest limb. Expression capn8 . 3 , novel calpain, was located in cells immediately flanking AER. The Wnt antagonist Dkk1 AER-specific limbs. Two transcription factors, sall1 zic5 were expressed mesenchyme. Zic 5 has no described association with development. We also describe expression genes, gata5 tnn not previously associated Differentially genes Fgf, retinoic acid (RA) signalling well differential cell adhesion proliferation. Conclusions identify new candidate for proximodistal patterning. Our RA-regulated supports role transient RA gradients bud proximal-to-distal anamniote model organism.

Язык: Английский

Cellular senescence promotes progenitor cell expansion during axolotl limb regeneration DOI Creative Commons
Qinghao Yu, Hannah Walters, Giovanni Pasquini

и другие.

Developmental Cell, Год журнала: 2023, Номер 58(22), С. 2416 - 2427.e7

Опубликована: Окт. 24, 2023

Axolotl limb regeneration is accompanied by the transient induction of cellular senescence within blastema, structure that nucleates regeneration. The precise role this blastemal senescent cell (bSC) population, however, remains unknown. Here, through a combination gain- and loss-of-function assays, we elucidate functions molecular features in vivo. We demonstrate plays positive during axolotl creating pro-proliferative niche supports progenitor expansion blastema outgrowth. Senescent cells impact their microenvironment via Wnt pathway modulation. Further, identify link between signaling propose bSC-derived signals facilitate proliferation neighboring part preventing into senescence. This work defines roles complex structures.

Язык: Английский

Процитировано

24

The salamander blastema within the broader context of metazoan regeneration DOI Creative Commons
Benjamin Tajer, Aaron M. Savage, Jessica L. Whited

и другие.

Frontiers in Cell and Developmental Biology, Год журнала: 2023, Номер 11

Опубликована: Авг. 11, 2023

Throughout the animal kingdom regenerative ability varies greatly from species to species, and even tissue within same organism. The sheer diversity of structures mechanisms renders a thorough comparison molecular processes truly daunting. Are “blastemas” found in organisms as distantly related planarians axolotls derived ancestral process, or did they arise convergently independently? Is mouse digit tip blastema orthologous salamander limb blastema? In other fields, characterization reference model has facilitated these comparisons. For example, amphibian Spemann-Mangold organizer served an amazingly useful comparative template field developmental biology, allowing researchers draw analogies between which are superficially quite different. may serve best starting point for analysis regeneration, it been characterized by over 200 years research is supported growing arsenal tools. anatomical evolutionary closeness human also add value translational therapeutic standpoint. Tracing origins blastema, its relatedness throughout kingdom, will both enhance our basic biological understanding regeneration inform selection systems.

Язык: Английский

Процитировано

15

Multi-species atlas resolves an axolotl limb development and regeneration paradox DOI Creative Commons
Jixing Zhong, Rita Aires, Georgios Tsissios

и другие.

Nature Communications, Год журнала: 2023, Номер 14(1)

Опубликована: Окт. 10, 2023

Humans and other tetrapods are considered to require apical-ectodermal-ridge (AER) cells for limb development, AER-like suggested be re-formed initiate regeneration. Paradoxically, the presence of AER in axolotl, a primary model organism regeneration, remains controversial. Here, by leveraging single-cell transcriptomics-based multi-species atlas, composed human, mouse, chicken, frog cells, we first establish that axolotls contain with characteristics. Further analyses spatial transcriptomics reveal axolotl limbs do not fully re-form during Moreover, mesoderm displays part machinery, revealing program (re)growth. These results clarify debate about extent which developmental is recapitulated

Язык: Английский

Процитировано

11

Wnt signaling restores evolutionary loss of regenerative potential in Hydra DOI Creative Commons
Sergio E. Campos,

Sahar Naziri,

Jackson T. Crane

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2025, Номер unknown

Опубликована: Март 18, 2025

The regenerative potential of animals varies widely, even among closely-related species. In a comparative study regeneration across the Hydra genus, we found that while most species exhibit robust whole-body regeneration, oligactis and other members Oligactis clade consistently fail to regenerate their feet. To investigate mechanisms underlying this deficiency, analyzed transcriptional responses during head foot in H. . Our analysis revealed general injury response lacks activation Wnt signaling, pathway essential for vulgaris regeneration. Notably, transient treatment with agonist triggered foot-specific program, successfully rescuing profiling also dlx2 as likely high-level regulator dependent on signaling activation. establishes framework understanding molecular basis its evolutionary loss

Язык: Английский

Процитировано

0

Unlocking the Potential of Retinoic Acid: A Comprehensive Review of Its Regulatory Role in Epimorphic Regeneration in Axolotl Limbs for Regenerative Medicine DOI
Sajad Khan, Khurshid Ahmad, Xiaoshou Liu

и другие.

Regenerative Engineering and Translational Medicine, Год журнала: 2025, Номер unknown

Опубликована: Апрель 2, 2025

Язык: Английский

Процитировано

0

Improved transcriptome assembly and functional annotation of Pleurodeles waltl for regeneration research DOI Creative Commons
Mhd Yousuf Yassouf, Akira Kinoshita, Md. Mahmudul Hasan

и другие.

PLoS ONE, Год журнала: 2025, Номер 20(5), С. e0323196 - e0323196

Опубликована: Май 14, 2025

In this study, we present an updated transcriptome assembly for the Iberian ribbed newt, Pleurodeles waltl ( P. ), a widely used model organism in regeneration research. The existing publicly available species is limited by inclusion of only three libraries from limb and two heart, tissues particular interest studies. Additionally, previous annotation was limited, reducing utility dataset further in-depth To provide more complete with comprehensive annotation, utilized 58 previously published 9 newly sequenced libraries, expanding transcriptomic data key tissues, especially heart tissues. Our assessment demonstrates that new offers representation reads proteins compared to versions. Furthermore, significantly improved functional using Trinotate pipeline, which includes identification ORFs, Pfam motifs, gene names, GO terms, KEGG Orthology, facilitating robust analyses. We also examined various stages development, gaining insights into signaling pathways involved. This work provides valuable resource researchers investigating molecular mechanisms underlying waltl’s regenerative abilities, enabling detailed expression studies broader biological insights.

Язык: Английский

Процитировано

0

Fgf10 mutant newts regenerate normal hindlimbs despite severe developmental defects DOI Creative Commons
Miyuki Suzuki, Akinori Okumura, Akane Chihara

и другие.

Proceedings of the National Academy of Sciences, Год журнала: 2024, Номер 121(11)

Опубликована: Март 5, 2024

In amniote limbs, Fibroblast Growth Factor 10 (FGF10) is essential for limb development, but whether this function broadly conserved in tetrapods and/or involved adult regeneration remains unknown. To tackle question, we established Fgf10 mutant lines the newt Pleurodeles waltl which has amazing regenerative ability. While forelimbs develop normally, hindlimbs fail to and downregulate FGF target genes. Despite these developmental defects, mutants were able regenerate normal rather than recapitulating embryonic phenotype. Together, our results demonstrate an important role FGF10 hindlimb formation, little or no regeneration, suggesting that different mechanisms operate during versus development.

Язык: Английский

Процитировано

3

Enduring questions in regenerative biology and the search for answers DOI Creative Commons
Ashley W. Seifert, Elizabeth M. Duncan, Ricardo M. Zayas

и другие.

Communications Biology, Год журнала: 2023, Номер 6(1)

Опубликована: Ноя. 9, 2023

Abstract The potential for basic research to uncover the inner workings of regenerative processes and produce meaningful medical therapies has inspired scientists, clinicians, patients hundreds years. Decades studies using a handful highly model organisms have significantly advanced our knowledge key cell types molecular pathways involved in regeneration. However, many questions remain about how unfold regeneration-competent species, they are curtailed non-regenerative organisms, might be induced (or restored) humans. Recent technological advances genomics, biology, computer science, bioengineering, stem hold promise collectively provide new experimental evidence different accomplish process In theory, this should inform design clinical approaches medicine. A deeper understanding tissues organs regenerate will also undoubtedly impact adjacent scientific fields. To best apply adapt these technologies ways that break long-standing barriers answer critical regeneration, we must combine deep developmental evolutionary biologists with hard-earned expertise scientists mechanistic technical end, perspective is based on conversations from workshop organized at Banbury Center, during which diverse cross-section regeneration community experts various discussed enduring biology. Here, share group identified as significant unanswered, i.e., known unknowns. We describe obstacles limiting progress answering expanding number diversity used essential deepening capacity. Finally, propose investigating problems collaboratively across network researchers advance field unexpected insights into important related areas biology

Язык: Английский

Процитировано

8

Nature’s Secret Neuro-Regeneration Pathway in Axolotls, Polychaetes and Planarians for Human Therapeutic Target Pathways DOI Open Access
Nur Izzati Mansor,

Tengku Nabilatul Balqis,

Mohd Nizam Lani

и другие.

International Journal of Molecular Sciences, Год журнала: 2024, Номер 25(22), С. 11904 - 11904

Опубликована: Ноя. 6, 2024

Despite significant improvements in the comprehension of neuro-regeneration, restoring nerve injury humans continues to pose a substantial therapeutic difficulty. In peripheral nervous system (PNS), regeneration process after relies on Schwann cells. These cells play crucial role regulating and releasing different extracellular matrix proteins, including laminin fibronectin, which are essential for facilitating regeneration. However, during regeneration, is required regenerate long distance and, subsequently, loses its capacity facilitate this progression. Meanwhile, it has been noted that limited capabilities central (CNS) compared PNS. The CNS contains factors impede axons following axons. presence glial scar formation results from unfavourable condition, where accumulate at site, generating physical chemical barrier hinders neurons. contrast humans, several species, such as axolotls, polychaetes, planarians, possess ability their neural systems amputation. This based vast amount pluripotent stem have remarkable differentiate develop into any cell within body. Although also these cells, numbers extremely limited. Examining molecular pathways exhibited by organisms potential offer foundational understanding human process. review provides concise overview involved axolotl, polychaete, planarian neuro-regeneration. It new perspective approaches neuro-regeneration humans.

Язык: Английский

Процитировано

2

Post-amputation reactive oxygen species production is necessary for axolotls limb regeneration DOI Creative Commons

Belfran Carbonell-M,

Juliana Zapata Cardona, Jean Paul Delgado

и другие.

Frontiers in Cell and Developmental Biology, Год журнала: 2022, Номер 10

Опубликована: Авг. 26, 2022

Introduction: Reactive oxygen species (ROS) represent molecules of great interest in the field regenerative biology since several animal models require their production to promote and favor tissue, organ, appendage regeneration. Recently, it has been shown that ROS such as hydrogen peroxide (H2O2) is required for tail regeneration Ambystoma mexicanum. However, date, unknown whether necessary limb this model. Methods: forelimbs juvenile animals were amputated proximally dynamics was determined using 2'7- dichlorofluorescein diacetate (DCFDA) during process. Inhibition performed NADPH oxidase inhibitor apocynin. Subsequently, a rescue assay exogenous (H2O2). The effect these treatments on size skeletal structures regenerated evaluated by staining with alcian blue alizarin red, well blastema formation, cell proliferation, immune recruitment, expression genes related proximal-distal identity. Results: our results show inhibition post-amputation A. mexicanum salamander model miniature significant reduction elements ulna, radius, overall autopod. Additionally, other effects decrease number carpals, defective joint morphology, failure integrity between structure remaining tissue identified. In addition, treatment affected formation induced levels proliferation structure, CD45+ CD11b + system cells. On hand, blocking proximo-distal identity Aldha1a1, Rarβ, Prod1, Meis1, Hoxa13, Agr2 Yap1 early/mid blastema. Of interest, alterations, rescued application H2O2, suggesting ROS/H2O2 from early stages proper patterning limb.

Язык: Английский

Процитировано

11