Enabling sustainable agriculture through understanding and enhancement of microbiomes

New Phytologist, Год журнала: 2021, Номер 230(6), С. 2129 - 2147

Опубликована: Март 4, 2021

Summary Harnessing plant‐associated microbiomes offers an invaluable strategy to help agricultural production become more sustainable while also meeting growing demands for food, feed and fiber. A plethora of interconnected interactions among the host, environment microbes, occurring both above below ground, drive recognition, recruitment colonization resulting in activation downstream host responses functionality. Dissecting these complex by integrating multiomic approaches, high‐throughput culturing, computational synthetic biology advances is providing deeper understanding structure function native microbial communities. Such insights are paving way towards development products as well engineered with communities capable delivering agronomic solutions. While there a market microbial‐based solutions improve crop productivity, challenges commercialization remain. The continued translation microbiome knowledge into real‐world scenarios will require concerted transdisciplinary research, cross‐training next generation scientists, targeted educational efforts prime growers general public successful adoption innovative technologies.

Язык: Английский

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Plant microbiome structure and benefits for sustainable agriculture

Current Plant Biology, Год журнала: 2021, Номер 26, С. 100198 - 100198

Опубликована: Янв. 26, 2021

Plants are colonized by a multitude of micro-organisms, collectively called "microbiome," and which play essential roles in the niches they inhabit. The potential microbiome, combined with need to produce food more sustainably, makes its study promising. Despite growing recognition vast functional ability native microbiota as an intricate component plant fitness, our understanding how microbial communities structured, intrinsic environmental factors that can modulate network is partial understood. In this review, we explore research has characterized different methodological approaches have used access this. We consider impact plant's genotype, interactions between taxa, influence agricultural practices, well conditions establishment enrichment micro-organisms beneficial effects on growth, development, health. Ultimately, suggested model route converts current knowledge about microbiomes into biotechnological product applied agriculture systems. One proposed approach use driven community composition stimulate members. Some examples these influential bioinoculants, proper certain conditions. On other hand, critical microbiome be isolated, formulated, become new biological product. Regardless used, innovations represent future sustainable agriculture.

Язык: Английский

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Microbiome Modulation—Toward a Better Understanding of Plant Microbiome Response to Microbial Inoculants

Frontiers in Microbiology, Год журнала: 2021, Номер 12

Опубликована: Апрель 8, 2021

Plant-associated microorganisms are involved in important functions related to growth, performance and health of their hosts. Understanding modes action is for the design promising microbial inoculants sustainable agriculture. able interact with hosts often exert specific toward potential pathogens; underlying vitro interactions well studied. In contrast, situ effects inoculants, especially impact on plant indigenous microbiome was mostly neglected so far. Recently, research has revolutionized our understanding plants as coevolved holobionts but also microbiome-inoculant interactions. Here we disentangle point out following types modulations: (i) transient shifts, (ii) stabilization or increase diversity, (iii) evenness, (iv) restoration a dysbiosis/compensation reduction pathogen-induced shift, (v) targeted shifts beneficial members microbiota, (vi) suppression pathogens. Therefore, suggest modulations novel efficient mode that can be mediated via plant.

Язык: Английский

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Back to our roots: exploring the role of root morphology as a mediator of beneficial plant–microbe interactions

Environmental Microbiology, Год журнала: 2022, Номер 24(8), С. 3264 - 3272

Опубликована: Фев. 2, 2022

Summary Plant breeding for belowground traits that have a positive impact on the rhizosphere microbiome is promising strategy to sustainably improve crop yields. Root architecture and morphology are understudied plant targets despite their potential significantly shape microbial community structure function in rhizosphere. In this review, we explore relationship between various root architectural morphological interactions, focusing of diameter while discussing biological ecological mechanisms underpinning process. addition, propose three future research avenues drive area an effort unravel effect microbiology. This knowledge will pave way new strategies can be exploited sustainable high‐yielding cultivars.

Язык: Английский

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Recruitment of the rhizo-microbiome army: assembly determinants and engineering of the rhizosphere microbiome as a key to unlocking plant potential

Frontiers in Microbiology, Год журнала: 2023, Номер 14

Опубликована: Май 5, 2023

The viable community of microorganisms in the rhizosphere significantly impacts physiological development and vitality plants. assembly functional capacity microbiome are greatly influenced by various factors within rhizosphere. primary host plant genotype, developmental stage status, soil properties, resident microbiota. These drive composition, dynamics, activity microbiome. This review addresses intricate interplay between these how it facilitates recruitment specific microbes to support growth resilience under stress. also explores current methods for engineering manipulating microbiome, including plant-mediated manipulation, soil-related methods, microbe-mediated methods. Advanced techniques harness plant's ability recruit useful promising use rhizo-microbiome transplantation highlighted. goal this is provide valuable insights into knowledge, which will facilitate cutting-edge strategies enhanced stress tolerance. article indicates avenues future research field.

Язык: Английский

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Host-mediated gene engineering and microbiome-based technology optimization for sustainable agriculture and environment

Functional & Integrative Genomics, Год журнала: 2023, Номер 23(1)

Опубликована: Фев. 8, 2023

Язык: Английский

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The interplay between the inoculation of plant growth-promoting rhizobacteria and the rhizosphere microbiome and their impact on plant phenotype

Microbiological Research, Год журнала: 2024, Номер 283, С. 127706 - 127706

Опубликована: Март 29, 2024

Язык: Английский

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Insights to plant–microbe interactions provide opportunities to improve resistance breeding against root diseases in grain legumes

Plant Cell & Environment, Год журнала: 2018, Номер 42(1), С. 20 - 40

Опубликована: Апрель 12, 2018

Root and foot diseases severely impede grain legume cultivation worldwide. Breeding lines with resistance against individual pathogens exist, but these resistances are often overcome by the interaction of multiple in field situations. Novel tools allow to decipher plant-microbiome interactions unprecedented detail provide insights into mechanisms that consider both simultaneous attacks various interplay beneficial microbes. Although it has become clear plant-associated microbes play a key role plant health, systematic picture how what extent plants can shape their own detrimental or microbiome remains be drawn. There is increasing evidence for existence genetic variation regulation plant-microbe exploited breeders. We propose entire holobiont breeding strategies order unravel hidden parts complex defence mechanisms. This review summarizes (a) current knowledge soil-borne legumes, (b) rhizosphere-related traits, (c) root exudation microbe-mediated disease elaborates (d) traits incorporated programmes.

Язык: Английский

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The Coevolution of Plants and Microbes Underpins Sustainable Agriculture

Microorganisms, Год журнала: 2021, Номер 9(5), С. 1036 - 1036

Опубликована: Май 12, 2021

Terrestrial plants evolution occurred in the presence of microbes, phytomicrobiome. The rhizosphere microbial community is most abundant and diverse subset phytomicrobiome can include both beneficial parasitic/pathogenic microbes. Prokaryotes have evolved relationships with that range from non-dependent interactions to dependent endosymbionts. extreme endosymbiotic examples are chloroplasts mitochondria, which become organelles integral parts plant, leading some similarity DNA sequence between plant tissues cyanobacteria, prokaryotic symbiont ancestral plants. Microbes were associated precursors land plants, green algae, helped algae transition aquatic terrestrial environments. In setting contributes growth development by (1) establishing symbiotic growth-promoting including rhizobacteria mycorrhizal fungi, (2) conferring biotic stress resistance producing antibiotic compounds, (3) secreting microbe-to-plant signal such as phytohormones or their analogues, regulate aspects physiology, resistance. As evolved, they recruited microbes assist adaptation available growing serve themselves promoting growth, turn provides nutrition (root exudates, a source reduced carbon) desirable habitat (the within tissues). outcome this coevolution metabolically rich now exists holobiont, unit made up host, results wide coevolved relationships. We just beginning appreciate many ways complex subtle acts agricultural systems.

Язык: Английский

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Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome

Environmental Microbiome, Год журнала: 2023, Номер 18(1)

Опубликована: Авг. 3, 2023

Plants rely on their root microbiome as the first line of defense against soil-borne fungal pathogens. The abundance and activities beneficial microbial taxa at time prior to during infection are key protective success. If how invading pathogens can disrupt assembly gene expression is still largely unknown. Here, we investigated impact pathogen Fusarium oxysporum (fox) rhizosphere endosphere microbiomes a fox-susceptible fox-resistant common bean cultivar.Integration 16S-amplicon, shotgun metagenome well metatranscriptome sequencing with community ecology analysis showed that fox infections significantly changed composition in cultivar-dependent manner. More specifically, led increased diversity, network complexity, higher proportion genera Flavobacterium, Bacillus, Dyadobacter cultivar compared cultivar. In endosphere, also changes assembly, Sinorhizobium Ensifer Metagenome analyses further revealed enrichment terpene biosynthesis genes potential role suppression upon invasion.Collectively, these results specific bacterial activation putative disease-suppressive functions under siege.

Язык: Английский

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