Metabolomic and lipoproteomic differences and similarities between COVID-19 and other types of pneumonia

Scientific Reports, Год журнала: 2025, Номер 15(1)

Опубликована: Март 3, 2025

COVID-19 infection has revealed significant effects on the human blood metabolome and lipoproteome, which have been coherently observed in different cohorts worldwide across various waves of SARS-CoV-2 pandemic. As one main clinical manifestations is a severe acute respiratory illness, it pertinent to explore whether this metabolic/lipoproteomic disturbance associated with symptoms. To purpose we are here reporting comparative1H NMR analyses plasma 252 patients non-COVID-19 interstitial (24 individuals) or lobar (21 pneumonia, all matched by age, gender disease severity. The analysis based 24 metabolites 114 lipoprotein parameters. Several common traits among three groups, albeit some peculiar features characteristic each group. differences were between cases others.

Язык: Английский

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Metabolomic Biomarkers of Pulmonary Fibrosis in COVID‐19 Patients One Year After Hospital Discharge

Journal of Medical Virology, Год журнала: 2025, Номер 97(3)

Опубликована: Март 1, 2025

ABSTRACT Coronavirus disease 2019 (COVID‐19) global pandemic has affected more than 600 million people up to date. The symptomatology and severity of COVID‐19 are very broad, there still concerns about the long‐term sequelae that it can have on discharged patients. development pulmonary fibrotic after this infection is especially worrying. Our aim was determine if a metabolomic signature could predict sequelae. It multicenter prospective observation subcohort based COVID‐FIBROTIC study. A analysis performed by nuclear magnetic resonance (NMR) serum samples from patients admitted with bilateral pneumonia collected 2 months hospital discharge. One year admission, clinical, functional radiological data were these same Finally, 109 (mean age 57.68 [DS14.03], 65.13% male) available. Fibrotic 1 found in 33% them. Based NMR samples, possible distinguish 80.82% sensitivity, 72.22% specificity 0.83 an area under curve (AUC) value which would signs pattern sample collection. According metabolites participating discriminative model univariate statistics, glucose, valine, fatty acids (═CH–CH2–CH═) suggested as potential biomarkers COVID‐19. Trial Registration Number clinicaltrials.gov NCT04409275 (June 1, 2020).

Язык: Английский

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Enhanced Standard Operating Procedures for ³¹P NMR-Based Metabolomics in Tissue Extracts

JACS Au, Год журнала: 2025, Номер 5(5), С. 2285 - 2293

Опубликована: Апрель 13, 2025

Phosphorylated metabolites, here referred to as phosphometabolites, are sufficiently abundant and widely distributed provide a condensed representation of metabolism that can be readily accessed through NMR spectroscopy. This study addresses the challenge precisely quantifying phosphometabolites via quantitative 31P from tissue extracts. We optimized standard operating procedures for enhanced spectral resolution, signal intensity, accuracy. By amply evaluating solvent buffer conditions, reference compounds, paramagnetic relaxation enhancers, we identified optimal conditions metabolite analysis, including use trimethylphosphine oxide accurate referencing due its short T1 time minimal offset glycine (in D2O) at pD 9.5, where virtually invariant frequencies sample osmolarities observed, along with maximal detection sensitivity temperature stability pH. These methodological advancements significantly improve reliability reproducibility phosphometabolite characterization, allowing assignment up 60 independent signals in one-dimensional (1D) spectrum (of total 94 peaks), resulted proper quantification 44 different tissular samples.

Язык: Английский

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Convergent Mechanisms in Virus-Induced Cancers: A Perspective on Classical Viruses, SARS-CoV-2, and AI-Driven Solutions

Infectious Disease Reports, Год журнала: 2025, Номер 17(2), С. 33 - 33

Опубликована: Апрель 16, 2025

This perspective examines the potential oncogenic mechanisms of SARS-CoV-2 through comparative analysis with established cancer-causing viruses, integrating classical virological approaches artificial intelligence (AI)-driven analysis. The paper explores four key themes: shared between viruses and (including cell cycle dysregulation, inflammatory signaling, immune evasion, metabolic reprogramming); application AI in understanding viral oncogenesis; integration neuroimaging evidence; future research directions. author presents novel hypotheses regarding SARS-CoV-2’s mechanisms, supported by recent PET/FDG imaging studies showing persistent alterations. manuscript emphasizes transformative combining traditional methods advanced technologies for better preventing virus-induced cancers, while highlighting importance long-term monitoring COVID-19 survivors developments.

Язык: Английский

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Recommendations for sample selection, collection and preparation for NMR-based metabolomics studies of blood

Metabolomics, Год журнала: 2025, Номер 21(3)

Опубликована: Май 10, 2025

Metabolic profiling of blood metabolites, particularly in plasma and serum, is vital for studying human diseases, conditions, drug interventions toxicology. The clinical significance arises from its close ties to all cells facile accessibility. However, patient-specific variables such as age, sex, diet, lifestyle health status, along with pre-analytical conditions (sample handling, storage, etc.), can significantly affect metabolomic measurements whole blood, plasma, or serum studies. These factors, referred confounders, must be mitigated reveal genuine metabolic changes due illness intervention onset. This review aims aid metabolomics researchers collecting reliable, standardized datasets NMR-based (whole/serum/plasma) metabolomics. goal reduce the impact confounding factors enhance inter-laboratory comparability, enabling more meaningful outcomes outlines main affecting metabolite levels offers practical suggestions what measure expect, how mitigate properly prepare, handle store biosamples report data targeted studies serum.

Язык: Английский

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Metabolomics and machine learning identify urine metabolic characteristics and potential biomarkers for severe Mycoplasma pneumoniae pneumonia

Scientific Reports, Год журнала: 2025, Номер 15(1)

Опубликована: Май 16, 2025

To study the differences in urine metabolome between pediatric patients with severe Mycoplasma pneumoniae pneumonia (SMPP) and those general (GMPP) via non-targeted metabolomics method, potential biomarkers were explored through machine learning (ML) algorithms. The metabonomics data of 48 children SMPP 85 GMPP collected high performance liquid chromatography‒mass spectrometry (HPLC-MS/MS). differential metabolites two groups obtained principal component analysis (PCA) partial least squares-discriminant (PLS-DA), significant metabolic pathways screened enrichment analysis. Potential identified using random forest algorithm, their relationships clinical indicators subsequently analyzed. A total 136 significantly samples from GMPP. Of these, 68 upregulated, downregulated, predominantly belonging to amino acid group. 6 enriched, including Galactose metabolism, Pantothenate CoA biosynthesis, Cysteine methionine Biotin Glycine, serine threonine Arginine biosynthesis. Three learning: 3-Hydroxyanthranilic (3-HAA), L-Kynurenine, 16(R)-HETE. area under receiver operating characteristic curve (AUC) for this three-metabolite panel was 0.9142. There are great children, multiple being abnormally expressed. have been as early detection SMPP.

Язык: Английский

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Meta-Analysis of COVID-19 Metabolomics Identifies Variations in Robustness of Biomarkers

International Journal of Molecular Sciences, Год журнала: 2023, Номер 24(18), С. 14371 - 14371

Опубликована: Сен. 21, 2023

The global COVID-19 pandemic resulted in widespread harms but also rapid advances vaccine development, diagnostic testing, and treatment. As the disease moves to endemic status, need identify characteristic biomarkers of for diagnostics or therapeutics has lessened, lessons can still be learned inform biomarker research dealing with future pathogens. In this work, we test five sets research-derived against an independent targeted quantitative Liquid Chromatography–Mass Spectrometry metabolomics dataset evaluate how robustly these proposed panels would distinguish between COVID-19-positive negative patients a hospital setting. We further crowdsourced panel comprising most commonly mentioned literature 2020 2023. best-performing dataset—measured by F1 score (0.76) AUROC (0.77)—included nine biomarkers: lactic acid, glutamate, aspartate, phenylalanine, β-alanine, ornithine, arachidonic choline, hypoxanthine. Panels fewer metabolites performed less well, showing weaker statistical significance cohort than originally reported their respective discovery studies. Whilst studies reviewed here were small may subject confounders, it is desirable that resilient across cohorts if they are find use clinic, highlighting importance assessing robustness reproducibility analyses populations.

Язык: Английский

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Differential abundance of lipids and metabolites related to SARS-CoV-2 infection and susceptibility

Scientific Reports, Год журнала: 2023, Номер 13(1)

Опубликована: Сен. 13, 2023

The mechanisms driving SARS-CoV-2 susceptibility remain poorly understood, especially the factors determining why unvaccinated individuals uninfected despite high-risk exposures. To understand lipid and metabolite profiles related with COVID-19 disease progression. We collected samples from an exceptional group of healthcare workers heavily exposed to but not infected ('non-susceptible') subjects who became during follow-up ('susceptible'), including non-hospitalized hospitalized patients different severity providing at early stages. Then, we analyzed their plasma metabolomic using mass spectrometry coupled liquid gas chromatography. show specific lipids metabolites that could explain severity. More importantly, non-susceptible a unique lipidomic pattern characterized by upregulation most lipids, ceramides sphingomyelin, which be interpreted as markers low infection. This study strengthens findings other researchers about importance studying relevant pathogenesis.

Язык: Английский

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Urinary phenotyping of SARS-CoV-2 infection connects clinical diagnostics with metabolomics and uncovers impaired NAD⁺ pathway and SIRT1 activation

Clinical Chemistry and Laboratory Medicine (CCLM), Год журнала: 2023, Номер 62(4), С. 770 - 788

Опубликована: Ноя. 13, 2023

The stratification of individuals suffering from acute and post-acute SARS-CoV-2 infection remains a critical challenge. Notably, biomarkers able to specifically monitor viral progression, providing details about patient clinical status, are still not available. Herein, quantitative metabolomics is progressively recognized as useful tool describe the consequences virus-host interactions considering also metadata.

Язык: Английский

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Amino Acid Metabolism in Leukocytes Showing In Vitro IgG Memory from SARS-CoV2-Infected Patients

Diseases, Год журнала: 2024, Номер 12(3), С. 43 - 43

Опубликована: Фев. 23, 2024

The immune response to infectious diseases is directly influenced by metabolic activities. COVID-19 a disease that affects the entire body and can significantly impact cellular metabolism. Recent studies have focused their analysis on potential connections between post-infection stages of SARS-CoV2 different pathways. spike S1 antigen was found in vitro IgG antibody memory for PBMCs when obtaining PBMC cultures 60–90 days post infection, significant increase S-adenosyl homocysteine, sarcosine, arginine detected mass spectrometric analysis. involvement these metabolites physiological recovery from viral infections activity well documented, they may provide new simple method better comprehend leukocytes. Moreover, there change metabolism tryptophan urea cycle pathways leukocytes with memory. With data, together results literature, it seems leukocyte reprogrammed after pathogenesis activating certain amino acid pathways, which be related protective immunity against SARS-CoV2.

Язык: Английский

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