Frontiers in Genetics,
Год журнала:
2023,
Номер
14
Опубликована: Окт. 6, 2023
Background:
Alzheimer’s
disease
(AD)
is
a
complex
disorder,
and
its
risk
influenced
by
multiple
genetic
environmental
factors.
In
this
study,
an
AD
gene
prediction
framework
based
on
spatial
temporal
features
of
expression
data
(STGE)
was
proposed.
Methods:
We
proposed
data.
The
providers
different
tissues
ages
were
used
as
model
features.
Human
genes
classified
or
non-risk
sets
information
extracted
from
relevant
databases.
Support
vector
machine
(SVM)
models
constructed
to
capture
the
patterns
believed
contribute
AD.
Results:
recursive
feature
elimination
(RFE)
method
utilized
for
selection.
Data
64
tissue-age
obtained
before
selection,
number
reduced
19
after
RFE
performed.
SVM
built
evaluated
using
selected
full
area
under
curve
(AUC)
values
(0.740
[0.690–0.790])
(0.730
[0.678–0.769])
very
similar.
Fifteen
predicted
be
with
probability
greater
than
90%
obtained.
Conclusion:
newly
performed
comparably
previous
methods
protein-protein
interaction
(PPI)
network
properties.
A
list
15
candidate
also
generated
provide
support
further
studies
etiology
Oxidative Medicine and Cellular Longevity,
Год журнала:
2022,
Номер
2022, С. 1 - 15
Опубликована: Авг. 24, 2022
Traumatic
brain
injury
(TBI)
is
a
serious
health
issue
with
high
incidence,
morbidity,
and
mortality
that
poses
large
burden
on
society.
Further
understanding
of
the
pathophysiology
cell
death
models
induced
by
TBI
may
support
targeted
therapies
for
patients.
Ferroptosis,
model
programmed
first
defined
in
2012,
characterized
iron
dyshomeostasis,
lipid
peroxidation,
glutathione
(GSH)
depletion.
Ferroptosis
distinct
from
apoptosis,
autophagy,
pyroptosis,
necroptosis
has
been
shown
to
play
role
secondary
worsen
long-term
outcomes
after
TBI.
This
review
systematically
describes
(1)
regulatory
pathways
ferroptosis
TBI,
(2)
neurobiological
links
between
other
models,
(3)
potential
targeting
Virologica Sinica,
Год журнала:
2023,
Номер
39(1), С. 31 - 43
Опубликована: Сен. 9, 2023
Human
endogenous
retroviruses
(HERVs)
are
remnants
of
retroviral
infections
in
human
germline
cells
from
millions
years
ago.
Among
these,
ERVW-1
(also
known
as
HERV-W-ENV,
ERVWE1,
or
ENVW)
encodes
the
envelope
protein
HERV-W
family,
which
contributes
to
pathophysiology
schizophrenia.
Additionally,
neuropathological
studies
have
revealed
cell
death
and
disruption
iron
homeostasis
brains
individuals
with
Here,
our
bioinformatics
analysis
showed
that
differentially
expressed
genes
prefrontal
cortex
RNA
microarray
dataset
(GSE53987)
were
mainly
related
ferroptosis
its
associated
pathways.
Clinical
data
demonstrated
significantly
lower
expression
levels
ferroptosis-related
genes,
particularly
Glutathione
peroxidase
4
(GPX4)
solute
carrier
family
3
member
2
(SLC3A2),
schizophrenia
patients
compared
normal
controls.
Further
in-depth
analyses
a
significant
negative
correlation
between
GPX4/SLC3A2
Studies
indicated
increased
levels,
malondialdehyde
(MDA),
transferrin
receptor
1
(TFR1)
while
decreasing
glutathione
(GSH)
triggering
loss
mitochondrial
membrane
potential,
suggesting
can
induce
ferroptosis.
Ongoing
research
has
shown
reduced
GPX4
SLC3A2
by
inhibiting
their
promoter
activities.
Moreover,
Ferrostatin-1
(Fer-1),
inhibitor,
reversed
accumulation
potential
loss,
well
restored
expressions
markers
GSH,
MDA,
TFR1
induced
ERVW-1.
In
conclusion,
could
promote
downregulating
SLC3A2,
revealing
novel
mechanism
neuronal
Alzheimer s & Dementia,
Год журнала:
2025,
Номер
21(1)
Опубликована: Янв. 1, 2025
Abstract
INTRODUCTION
Iron‐mediated
cell
death
(ferroptosis)
is
a
proposed
mechanism
of
Alzheimer's
disease
(AD)
pathology.
While
iron
essential
for
basic
biological
functions,
its
reactivity
generates
oxidants
which
contribute
to
damage
and
death.
METHODS
To
further
resolve
mechanisms
iron‐mediated
toxicity
in
AD,
we
analyzed
post
mortem
human
brain
ApoEFAD
mice.
RESULTS
AD
brains
had
decreased
antioxidant
enzymes,
including
those
mediated
by
glutathione
(GSH).
Subcellular
analyses
showed
greater
oxidative
lower
enzymes
lipid
rafts,
the
site
amyloid
processing,
than
non‐raft
membrane
fraction.
Apolipoprotein
E
ε4
carriers
raft
yield
with
oxidation.
The
hypothesized
role
pathology
was
tested
mice
chelation
deferoxamine,
fibrillar
peroxidation,
together
increased
GSH‐mediated
antioxidants.
DISCUSSION
These
novel
molecular
pathways
highlight
rafts
during
AD.
Highlghts
have
numerous
markers
ferroptosis,
reduced
levels,
storage.
Lipid
cases
enzyme
levels
activity
are
most
severe
apolipoprotein
carriers.
Neuronal
correlated
defense,
signaling
proteins
suggesting
that
neuronal
loss
linked
these
events.
Chelation
early‐onset
familial
model
reduces
peroxidation
amyloid.
Experimental Gerontology,
Год журнала:
2024,
Номер
187, С. 112374 - 112374
Опубликована: Фев. 6, 2024
Ischemic
stroke
and
vascular
dementia,
as
common
cerebrovascular
diseases,
with
the
former
causing
irreversible
neurological
damage
latter
cognitive
memory
impairment,
are
closely
related
have
long
received
widespread
attention.
Currently,
potential
causative
genes
of
these
two
diseases
yet
to
be
investigated,
effective
early
diagnostic
tools
for
not
emerged.
In
this
study,
we
screened
new
biomarkers
analyzed
therapeutic
targets
both
from
perspective
immune
infiltration.
Two
gene
expression
profiles
on
ischemic
dementia
were
obtained
NCBI
GEO
database,
key
identified
by
LASSO
regression
SVM-RFE
algorithms,
GO
KEGG
enrichment.
The
CIBERSORT
algorithm
was
applied
profile
species
quantify
24
subpopulations
cells.
Moreover,
logistic
modeling
analysis
illustrate
stability
in
diagnosis.
Finally,
validated
using
RT-PCR
assay.
A
total
105
intersecting
DEGs
2
sets
datasets,
bioinformatics
functional
showed
that
mainly
involved
purine
ribonucleoside
triphosphate
metabolic
process,respiratory
chain
complex,DNA−binding
transcription
factor
binding
active
transmembrane
transporter
activity.
is
Oxidative
phosphorylation,
cAMP
signaling
pathway.
finally
three
genes,
GAS2L1,
ARHGEF40
PFKFB3,
prediction
model
determined
GAS2L1
(AUC:
0.882),
0.867)
PFKFB3
0.869),
had
good
performance.
Meanwhile,
disease
core
infiltration
related,
highest
positive
correlation
macrophage
M1
(p
<
0.001)
negative
mast
cell
activation
=
0.0017);
B
cells
naive
0.001),
0.0047).
results
relative
mRNA
levels
ARHGEF40,
significantly
elevated
populations
groups
0.05).
Immune
infiltration-based
models
can
used
predict
diagnosis
patients
provide
a
treatment
diseases.
Molecular Neurobiology,
Год журнала:
2025,
Номер
unknown
Опубликована: Фев. 24, 2025
Alzheimer's
disease
(AD)
is
a
neurodegenerative
that
remains
challenging
to
treat.
Akt
and
Wnt
play
role
in
complex
cellular
signaling,
which
crucial
for
examining
the
onset
of
AD.
In
this
study,
we
aimed
identify
analyze
pathway-related
genes
(ARGs)
(WRGs)
as
AD
biomarkers,
determine
effects
ARGs
WRGs
on
AD,
verify
these
mouse
models.
We
searched
differentially
expressed
Gene
Expression
Omnibus
database,
constructed
candidate
gene
protein–protein
interaction
networks,
used
least
absolute
shrinkage
selection
operator
regression
analysis
support
vector
machine-recursive
feature
elimination
algorithm
screen
key
genes.
Correlation
functional
similarity
analyses
genes,
immune
infiltration
analysis,
competing
endogenous
RNA
network
construction,
drug
prediction
were
performed.
streptozotocin-treated
(STZ)-treated
mice
was
validated
using
quantitative
reverse
transcription
polymerase
chain
reaction
(RT-qPCR).
Bioinformatics
identified
five
AD:
PRKACA,
CDH3,
ATP6V0C,
DLL1,
CELSR2.
Step-down
tests,
immunohistochemistry,
silver
plate
staining
confirmed
successful
treatment
STZ-induced
mice.
According
RT-qPCR
relative
expression
DLL1
mRNA
higher
than
control
mice,
whereas
ATP6V0C
PRKACA
lower
mice;
consistent
with
results
bioinformatics
(p
<
0.05).
This
study
screened
biomarkers
associated
pathways
Frontiers in Veterinary Science,
Год журнала:
2025,
Номер
12
Опубликована: Май 6, 2025
Goose
parvovirus
(GPV)
poses
a
significant
threat
to
the
waterfowl
industry
as
it
results
in
high
mortality
rate
and
stunted
growth
surviving
goslings,
leading
economic
losses.
We
used
120
goslings
goose
embryo
fibroblasts
inoculated
with
GPV
SYG61
strain
study
pathogenesis
of
by
pathological
gene
expression
profile
changes.
Fourteen
days
after
infection
strain,
showed
63.33%,
along
dwarfism,
weight
loss,
severe
histopathological
lesions
liver
jejunum.
Serum
analysis
revealed
marked
increase
levels
immunosuppressive
factors
such
TGF-
β
IL-10
(
p
<
0.01
or
0.05),
while
pro-inflammatory
cytokines
IL-4,
IFN-
γ
,
TNF-
α
IgG
remained
unaffected.
In
addition,
inhibited
proliferation
induced
apoptosis,
demonstrated
transcriptomic
analysis,
which
identified
285
differentially
expressed
genes
(DEGs).
These
DEGs
were
enriched
pathways
involved
negative
regulation
cell
(GO:
0008285,
19/276,
LogP
=
−12.62)
skeletal
system
development
0001501,
25/227,
−12.51),
key
including
IL6
CXCL8
PTGDS
PI15
MMP9
MMP13
MMP2
CCN3
FAM180A
.
Other
linked
IL-17
signaling
pathway
(hsa04657)
programmed
death
0043068).
Notably,
activated
both
apoptosis
ferroptosis
through
upregulation
regulatory
PTGS2
TF
ASCL1
0.01).
findings
indicated
that
triggers
inflammatory
responses
death,
disturbs
related
development,
causes
retardation
dwarfism
infected
goslings.
This
provides
valuable
insights
into
pathogenic
mechanisms
offers
potential
strategies
mitigate
its
impact
improve
productivity
industry.
PLoS ONE,
Год журнала:
2024,
Номер
19(1), С. e0296030 - e0296030
Опубликована: Янв. 2, 2024
Objective
Screening
of
feature
genes
involved
in
cytokine
release
syndrome
(CRS)
from
the
coronavirus
disease
19
(COVID-19).
Methods
The
data
sets
related
to
COVID-19
were
retrieved
using
Gene
Expression
Omnibus
(GEO)
database,
differentially
expressed
(DEGs)
CRS
analyzed
with
R
software
and
Venn
diagram,
biological
processes
signaling
pathways
DEGs
GO
KEGG
enrichment.
Core
screened
Betweenness
MCC
algorithms.
GSE164805
GSE171110
dataset
used
verify
expression
level
core
genes.
Immunoinfiltration
analysis
was
performed
by
ssGSEA
algorithm
GSVA
package.
DrugBank
database
analyze
for
potential
therapeutic
drugs.
Results
This
study
obtained
6950
DEGs,
which
971
corresponded
(common
genes).
enrichment
showed
that
multiple
associated
common
closely
inflammatory
response.
Furthermore,
revealed
transcription
factors
regulate
these
are
also
algorithms
gene
screening,
yielding
seven
key
validation
significant
differences
between
normal
controls
four
(feature
genes),
namely
IL6R,
TLR4,
TLR2,
IFNG.
upregulated
TLR2
mainly
Toll-like
receptor
pathway
pathway,
while
downregulated
IFNG
primarily
participated
necroptosis
JAK-STAT
pathways.
Moreover,
immune
infiltration
indicated
higher
cell
mediates
In
addition,
drugs
identified
via
database.
Conclusion
may
be
pathogenic
targets
COVID-19.