Exploring Novel Genomic Loci and Candidate Genes Associated with Plant Height in Bulgarian Bread Wheat via Multi-Model GWAS DOI Creative Commons
Tania Kartseva, В. А. Александров, Ahmad M. Alqudah

и другие.

Plants, Год журнала: 2024, Номер 13(19), С. 2775 - 2775

Опубликована: Окт. 3, 2024

In the context of crop breeding, plant height (PH) plays a pivotal role in determining straw and grain yield. Although extensive research has explored genetic control PH wheat, there remains an opportunity for further advancements by integrating genomics with growth-related phenomics. Our study utilizes latest genome-wide association scan (GWAS) techniques to unravel basis temporal variation across 179 Bulgarian bread wheat accessions, including landraces, tall historical, semi-dwarf modern varieties. A GWAS was performed phenotypic data from three growing seasons, calculated best linear unbiased estimators, leveraging genotypic information 25K Infinium iSelect array, using statistical methods (MLM, FarmCPU, BLINK). Twenty-five quantitative trait loci (QTL) associated were identified fourteen chromosomes, encompassing 21 environmentally stable nucleotides (QTNs), four haplotype blocks. Certain (17) on chromosomes 1A, 1B, 1D, 2A, 2D, 3A, 3B, 4A, 5B, 5D, 6A remain unlinked any known Rht (Reduced height) genes, QTL, or PH, represent novel regions potential breeding significance. Notably, these exhibit varying effects contribute significantly natural variance, are expressed during seedling reproductive stages. The block chromosome contains five QTN reduced two promoting height. This configuration suggests substantial impact holds promise accurate marker-assisted selection. potentially genomic harbor putative candidate gene coding glutamine synthetase, gibberellin 2-oxidase, auxin response factor, ethylene-responsive transcription nitric oxide synthase; cell cycle-related encoding cyclin, regulator condensation (RCC1) protein, katanin p60 ATPase-containing subunit, expansins; genes implicated stem mechanical strength defense mechanisms, as well regulators such factors protein kinases. These findings enrich pool semi-dwarfing resources, providing optimize improve lodging resistance, achieve higher yields wheat.

Язык: Английский

Phytohormones: Heart of plants’ signaling network under biotic, abiotic, and climate change stresses DOI
Rahul Chakraborty, Reiaz Ul Rehman, Mohammed Wasim Siddiqui

и другие.

Plant Physiology and Biochemistry, Год журнала: 2025, Номер unknown, С. 109839 - 109839

Опубликована: Март 1, 2025

Язык: Английский

Процитировано

2
The Identification of Auxin Response Factors and Expression Analyses of Different Floral Development Stages in Roses DOI Open Access
Rui Huang, X Zhang, Kaiqing Luo

и другие.

Genes, Год журнала: 2025, Номер 16(1), С. 41 - 41

Опубликована: Янв. 1, 2025

Background/Objectives: Auxin response factors (ARFs) are important in plant growth and development, especially flower development. However, there is limited research on the comprehensive identification characterization of ARF genes roses. Methods: We employed bioinformatics tools to identify These were characterized for their phylogenetic relationships, chromosomal positions, conserved motifs, gene structures, expression patterns. Results: In this study, a total 17 identified genomes Rosa chinensis ‘OB’, R. ‘CH’, rugosa, wichurana. Based RNA-seq analyses, we found that had diverse transcript patterns various tissues cultivars. levels RcCH_ARFs during different flower-development stages classified into four clusters. cluster 3 4, specifically high low floral evocation. Gene analyses showed RcCH_ARF3, RcCH_ARF4, RcCH_ARF18 likely be key rose Conclusions: The investigated. results presented here provide theoretical basis molecular mechanisms development flowering roses, with broader application other species family novel

Язык: Английский

Процитировано

1
Auxin biodynamics and its integral role in enhancing plant resilience to environmental cues DOI
Muhammad Ali, Linsheng Shi,

Muhammad Aamir Khan

и другие.

Physiologia Plantarum, Год журнала: 2025, Номер 177(2)

Опубликована: Март 1, 2025

Auxins are essential plant hormones that regulate growth, development, and responses to environmental stressors. Plants frequently encounter challenges such as pests, diseases, high temperatures, drought, salinity, which necessitate adaptive mechanisms for survival. modulate stress-responsive signaling pathways by regulating gene expression interacting with other phytohormones, thereby influencing physiological processes maintain homeostasis under stress conditions. This review elucidates the molecular through auxins mediate biotic abiotic stresses. The findings indicate pivotal in activating defense pathways. Differential of auxin-related genes has been observed various crops conditions, underscoring their role enhancing resistance against pathogens improving drought tolerance. Additionally, influence root architecture growth responses, facilitating adaptations trichome development herbivory. Moreover, interplay between auxin phytohormones is crucial effective responses. Overall, play a multifaceted enabling plants cope stresses mechanisms. Understanding these complex involving can inform future research aimed at engineering resilient varieties capable thriving changing climates. Further studies needed clarify specific functions contexts develop practical applications crop improvement.

Язык: Английский

Процитировано

1
Maize auxin response factor ZmARF1 confers multiple abiotic stresses resistances in transgenic Arabidopsis DOI
Ling Liu, Ying Gong,

Baba Salifu Yahaya

и другие.

Plant Molecular Biology, Год журнала: 2024, Номер 114(4)

Опубликована: Июнь 15, 2024

Язык: Английский

Процитировано

3
Pan-genome analysis and expression verification of the maize ARF gene family DOI Creative Commons

Quancai Man,

Yanqun Wang, S. Z. Gao

и другие.

Frontiers in Plant Science, Год журнала: 2025, Номер 15

Опубликована: Фев. 11, 2025

Auxin transcription factors regulate auxin responses and play crucial roles in plant growth, development, to abiotic stress. Utilizing the maize pan-genome data, this study identified 35 ARF family members maize, comprising 21 core genes, 10 near-core 4 non-essential genes; no private genes were detected. The construction of a phylogenetic tree using Arabidopsis thaliana revealed that G3 subfamily comprises highest number with total 10, exhibits relative stability throughout evolution maize. calculation Ka/Ks ratios for across 26 genomes indicated that, aside from ARF8 ARF11 , which subjected positive selection, remaining underwent purifying selection. Analysis structural variation expression level ARF4 gene significantly differed as result variation. Simultaneously, also influenced conserved domain cis-acting elements gene. Further combining transcriptome data RT-qPCR found levels higher at early stage embryo grain each member complementary, plays an important role In summary, utilizes bioinformatics methods investigate evolutionary relationships functional thereby providing novel theoretical framework further research on family.

Язык: Английский

Процитировано

0
Trans-zeatin modulates shade stress adaptation in soybean through transcription associated metabolic network DOI

Nishbah Mughal,

Xiaoling Wu, Yuhong He

и другие.

Plant Physiology and Biochemistry, Год журнала: 2025, Номер unknown, С. 109686 - 109686

Опубликована: Фев. 1, 2025

Язык: Английский

Процитировано

0
Transcriptome Insights into Resistance Mechanisms Against Soybean Mosaic Virus Strain SC4 in Soybean DOI Creative Commons
Muhammad Mohsin Raza,

Huiying Jia,

Shengyu Gu

и другие.

Agronomy, Год журнала: 2025, Номер 15(4), С. 906 - 906

Опубликована: Апрель 5, 2025

Soybean, an economically valuable oil and protein crop, is vulnerable to numerous biotic stresses throughout its growth period. Soybean mosaic virus (SMV), a destructive plant pathogen, induces substantial yield reduction seed quality deterioration globally. In China, total of 22 distinct SMV strains have been documented, with SMV-SC4 being widely spread strain. The Chinese cultivar Kefeng-1 (KF) resistant this To investigate the resistance mechanism, transcriptional analysis was performed at 0, 6, 24, 48 h post-inoculation SC4 in KF (Resistant) NN1138-2 (NN) (Susceptible). A 1201 core differentially expressed genes (DEGs) were identified as active ones against infection, most originating from early infection stages. Gene ontology enrichment indicated that DEGs directly involved signal transduction those related stress response contributed indirectly, including phosphorylation, kinase activity, oxidation–reduction, oxidoreductase catalytic metal ion transport, auxin. 27 “Signal transduction” them disease conserved domains, 52 activity involving removing ROS attack, 8 “Response auxin”, phytohormone plays role addition development. These more versus susceptible cultivar. Our findings provide insights into molecular networks soybean SMV, which may be relevant understanding viral infections.

Язык: Английский

Процитировано

0
Microbial Biotechnologies for Salt Tolerance in Alfalfa: Agro-Nutritional Comparison Between Local and Imported Varieties DOI Creative Commons
Raja Ben-Laouane, Mohamed Ait-El-Mokhtar, Mohamed Anli

и другие.

Nitrogen, Год журнала: 2025, Номер 6(2), С. 27 - 27

Опубликована: Апрель 12, 2025

Increasing soil salinity is threatening agricultural productivity which implies the development of new sustainable strategies to deal with this challenge. The main objective here assess potential for improving tolerance alfalfa by combining inoculations rhizobia and AMF. However, distinguishing feature study comparison two varieties’ microbial response salinity. greenhouse trial was conducted on an Australian variety Siriver indigenous Demnate population, were inoculated Rhizoglomus irregulare and/or native AMF, a RhOL1 rhizobial strain. strain selected from nine tested their plant growth promoting rhizobacteria (PGPR) activities. In addition its ability tolerate high levels (769 mM) solubilize insoluble phosphate as well potassium, it can also synthesize auxins such IAA. application these biofertilizers carried out in absence presence saline stress (0 120 mM NaCl). double AMF significantly improve shoot root dry biomass, elongation, number formed leaves, mineral nutrition, nodules rate mycorrhizal colonization. synergistic effects between have been demonstrated study. behavior genotypes towards inoculation different. react + more important than population. Thus, possibility formulating based AMF–rhizobia–hote tripartite combination production areas.

Язык: Английский

Процитировано

0
Characterization of wheat oligo‐tiller mutant ot2 and fine mapping of the mutant gene Taot2 DOI Creative Commons
Chenxi Wang, Jiaxing Bai,

Hongchun Xiong

и другие.

The Plant Genome, Год журнала: 2025, Номер 18(2)

Опубликована: Май 8, 2025

Abstract Tiller number is a crucial determinant of grain yield in wheat ( Triticum aestivum L.), and identifying functional alleles can enhance our understanding tiller development. Here, we describe the ot2 mutant, which exhibits 91% reduction compared to wild type displays inhibited bud differentiation from 2–3 leaf stage. Bulked segregant analysis combined with exon sequencing mapped Taot2 gene chromosome 1BL. Fourteen kompetitive allele‐specific PCR markers were developed utilized narrow down region containing 2.22 Mb interval. This encompasses 39 high‐confidence genes. Through transcriptomic investigation, TraesCS1B03G1126300 was identified as candidate gene, encoding an auxin‐responsive protein auxin/indole‐3‐acetic acid family. Our findings provide foundation for map‐based cloning , novel offer valuable insights into initiation.

Язык: Английский

Процитировано

0
Continuous Light Induces Adventitious Root Formation in Robinia pseudoacacia L. through the Auxin Response Factor RpARF12 Lacking the CTD Domain DOI
Yue Wu, Qi Guo, Yizhe Cheng

и другие.

Plant Physiology and Biochemistry, Год журнала: 2025, Номер unknown, С. 110049 - 110049

Опубликована: Май 1, 2025

Язык: Английский

Процитировано

0