medRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Окт. 30, 2023
ABSTRACT
Background
Antibiotic
resistance
(ABR)
is
silent
global
pandemic.
Our
current
control
strategies
are
informed
by
evidence
primarily
from
surveillance
strategies.
Here,
we
use
a
national
dataset
to
demonstrate
how
such
can
be
systematically
generated,
in
so
doing
characterize
ABR
profiles
of
priority
clinical
pathogens
and
identify
potential
drivers
addition
inferences
on
antibiotic
usage
Uganda.
Results
the
12,262
samples
cultured
between
2019-2021,
9,033
with
complete
metadata
were
analyzed,
Female
patients
accounted
for
57.8%
who
1
104
years.
The
isolated
bacteria
(69%)
clustered
into
twelve
eight
syndromes.
This
included
Escherichia
coli
26%(n=1620),
Klebsiella
spp
.11%
(n=685),
Acinetobacter
.
4%(n=250),
Citrobacter
4%
(n=250),
Pseudomonas
3%
(n=187),
Enterobacter
2%
(n=124),
as
well
Salmonella
1%
(n=62).
Among
gram-positive
bacteria,
Staphylococcus
aureus
10%
(n=623),
Enterococcus
8%
(n=498),
Streptococcus
(n=124)
predominant.
baumannii
was
predominantly
multi
drug
resistant
(MDR)
mostly
recovered
septic
wound
infection
(SWI).
aeruginosa
,
pneumoniae
also
linked
SWIs
&
urinary
tract
infections
(UTIs).
Male
more
likely
carry
OR=1.14,
95%
CI
[1.12-1.42],
p<0.001),
within
specific
age
groups
(51-60,
OR=1.16,
[0.88-1.28],
p=0.001).
Seasonality
influences
associated
syndromes,
example,
second
quarter,
OR=2.1,
[1.9-2.6],
narrow
spectrum
antibiotics
OR=1,64,
[1.39-1.94],
p<0.001)
targeting
respiratory
(RTIs).
bloodstream
(BSIs)
significantly
common
than
UTIs
RTIs.
Conclusions
across
increasing
at
rate
2.8%
per
year,
an
upsurge
2021.
account
disproportionately
high
prevalence
MDR
caused
spp.
including
MRSA
main
driver
BSIs.
far
their
adult
life.
Encouragingly,
carbapenem
remains
relatively
low
in-line
predicted
use.
Such
critical
effective
implementation
evaluation
AMR
National
action
plans,
therefore
public
health
institutes
(NPHIs)
ought
invest
building
capacity
data
analysis
support
decision-making.
Journal of Clinical Medicine,
Год журнала:
2025,
Номер
14(2), С. 332 - 332
Опубликована: Янв. 8, 2025
Background/Objectives:
The
growing
resistance
of
bacteria
to
antibiotics
is
a
serious
problem
in
health
care.
present
study
aims
assess
the
drug
Staphylococcus
aureus,
Enterococcus
faecium,
faecalis
and
Streptococcus
pneumoniae
isolated
from
infections
multispecialty
hospital
over
6-year
period.
Methods:
Identification
antimicrobial
susceptibility
testing
were
performed
using
VITEK®2
automated
system
(Biomerieux).
Results
Conclusions:
Based
on
data
analyzed
hospital,
MRSA
strains
etiological
factor
18-28%
S.
aureus
infections.
In
each
year
2017
2022,
percentage
MSSA
steadily
exceeded
number
strains.
show
significant
sensitivity
antibiotic
groups
other
than
β-lactams,
such
as
aminoglycosides,
tetracyclines,
cotrimoxazole,
linezolid
vancomycin.
Ciprofloxacin
which
displays
second-highest
resistance,
after
methicillin.
case
strains,
almost
100%
lack
quinolines
was
found.
An
increase
caused
by
genus
observed.
For
E.
faecium
vancomycin-resistant
reached
much
41%
2018.
Among
resistant
faecalis,
VREs
(Vancomycin-Resistant
Enterococci)
slightly
predominate,
while
GREs
(Glycopeptide-Resistant
are
more
prevalent
faecium.
that
insensitive
ampicillin
ranged
6%
17%.
2017,
this
17%,
their
share
decreased
9%.
2021-2022,
erythromycin
high
33%.
This
related
MLS
(macrolides,
lincosamides,
streptogramines
B)
mechanism.
observed
2019.
six-year
period,
2020
(beginning
pandemic),
some
antibiotics,
consumption
DDD/100
person-days
recorded.
most
visible
fluoroquinolones.
analysis
carried
out
will
effectiveness
empirical
therapy
prudent
use
limit
selection
multidrug-resistant
Antibiotics,
Год журнала:
2025,
Номер
14(2), С. 206 - 206
Опубликована: Фев. 17, 2025
Introduction:Escherichia
coli
(E.
coli)
and
Klebsiella
pneumoniae
(K.
pneumoniae)
are
resistant
to
third-generation
cephalosporins
(3GCs),
carbapenems,
colistin,
tigecycline,
making
them
a
major
public
health
priority,
mainly
within
the
developing
world.
However,
their
genomic
epidemiology
possible
determinants
of
resistance
remain
be
elucidated.
Thus,
this
study
aimed
perform
characterization
E.
K.
pneumoniae,
both
which
last-line
antibiotics,
isolated
from
humans,
poultry,
dairy
farm
environment
Ecuador.
Methods:
This
analyzed
nine
3GC-resistant
isolates
harboring
mcr-1
gene
(six
poultry
farms,
two
human
infections,
one
compost),
together
with
ten
colistin-
carbapenem-resistant
clinical
samples.
Results:
The
origin
belonged
ST609
phylogroup
A,
while
compost
phylogroups
B1,
E,
F.
Diverse
STs
included
ST13
(five
isolates),
ST258
(four
ST86
(one
isolate).
Within
isolates,
blaCTX-M-55,
blaCTX-M-65,
blaCTX-M-15,
blaCTX-M-2
genes
were
identified.
also
identified
blaCMY-2
blaKPC-3
(the
latter
in
carbapenem-susceptible
In
coli,
plasmid-borne
mcr-1.1
was
across
all
an
IncI2
plasmid.
Tigecycline-reduced
susceptibility
or
related
missense
amino
acid
substitutions
coded
marA
acrA
genes.
pneumoiae,
blaCTX-M-15
on
hand,
blaKPC-2
blaKPC-3,
other,
associated
3GC
carbapenem
resistance,
respectively.
allele
~10
kb
Tn4401
transposon
(tnpR-tnpA-istA-istB-blaKPC-2-tnpA).
K
sequence
data
phenotypic
analysis
linked
nonsense
substitution
mgrB
(K3*)
marA,
acrA,
arnB,
eptA,
pmrB,
pmrJ,
phoQ
colistin
resistance.
Meanwhile,
tigecycline
ramR
sequence.
Additionally,
several
integron
structures,
including
Int191
(5'CS-dfrA14-3'CS),
most
prevalent
(Int)
among
study,
followed
by
Int0
(5'CS-3'CS)
Int18
(5'CS-dfrA1-3'CS).
Conclusions:
These
results
contribute
MDR
our
setting
worldwide
One
Health
approach.
Biomedicines,
Год журнала:
2025,
Номер
13(5), С. 1066 - 1066
Опубликована: Апрель 28, 2025
Background/Objectives:
Urinary
tract
infections
(UTIs)
represent
a
significant
public
health
challenge,
with
Escherichia
coli
being
the
primary
causative
pathogen.
The
rise
in
antimicrobial
resistance
(AMR),
further
intensified
by
shifts
antibiotic
prescribing
practices
during
and
after
COVID-19
pandemic,
poses
substantial
difficulties
treatment
optimization
clinical
management.
Methods:
This
retrospective
study
analyzed
644
E.
strains
from
urine
samples
collected
southeastern
Romanian
hospital
two
periods:
pre-pandemic
(2018–2019,
N
=
361)
post-pandemic
(2023–2024,
283).
Antimicrobial
susceptibility
was
assessed
using
VITEK
automated
system
for
key
classes.
Results:
A
increase
fluoroquinolone
observed,
especially
ciprofloxacin
(p
0.02),
alongside
rising
ceftriaxone
0.004),
suggesting
spread
of
ESBL-producing
strains.
Resistance
to
trimethoprim/sulfamethoxazole,
ampicillin,
amoxicillin/clavulanic
acid
remained
high,
limiting
their
empirical
use.
Carbapenem
low
>
0.1),
while
nitrofurantoin
fosfomycin
retained
high
efficacy
0.26
p
0.64).
Conclusions:
period
showed
concerning
fluoroquinolones
third-generation
cephalosporins,
highlighting
need
stricter
stewardship.
Carbapenems
remain
effective
severe
infections,
are
reliable
first-line
options
uncomplicated
UTIs.
Continuous
AMR
surveillance
is
essential
optimize
curb
multidrug-resistant
Journal of Clinical Medicine,
Год журнала:
2023,
Номер
12(15), С. 5020 - 5020
Опубликована: Июль 30, 2023
In
recent
years,
we
have
witnessed
increasing
drug
resistance
among
bacteria,
which
is
associated
with
the
use
and
availability
of
an
number
broad-spectrum
antimicrobials,
as
well
their
irrational
excessive
use.
The
present
study
aims
to
analyze
changes
in
Gram-negative
Pseudomonas
aeruginosa
Acinetobacter
baumannii,
isolated
from
infections
a
multi-profile
hospital
over
five-year
period
(from
2017
2022).
Among
practical
results
evaluation
these
data
will
be
possibility
determine
susceptibility
antibiotics
used
hospital.
This,
turn,
help
propose
new
therapeutic
options,
especially
for
empirical
therapy,
essential
severe
infections.
Analysis
different
antibiotic
groups
has
made
it
possible
identify
causes
analyzed
bacilli.
highest
was
observed
between
2020
2022,
most
probably
due
COVID-19
pandemic
higher
patients
condition
requiring
hospitalization.
Unfortunately,
during
analyzed,
multi-resistant
strains
A.
baumannii
successively
increasing;
this
seems
related
increased
use,
period,
antibiotics,
mainly
penicillins
inhibitors,
third-generation
cephalosporins
carbapenems.
Antibiotics,
Год журнала:
2024,
Номер
13(11), С. 1064 - 1064
Опубликована: Ноя. 8, 2024
Acinetobacter
baumannii—a
multidrug-resistant
(MDR)
pathogen
that
causes,
for
example,
skin
and
soft
tissue
wounds;
urinary
tract
infections;
pneumonia;
bacteremia;
endocarditis,
particularly
due
to
its
ability
form
robust
biofilms—poses
a
significant
challenge
in
clinical
settings.
This
structure
protects
the
bacteria
from
immune
responses
antibiotic
treatments,
making
infections
difficult
eradicate.
Given
rise
resistance,
alternative
therapeutic
approaches
are
urgently
needed.
Bacteriophage-based
strategies
have
emerged
as
promising
solution
combating
A.
baumannii
biofilms.
Phages,
which
viruses
specifically
infect
bacteria,
offer
targeted
effective
means
of
disrupting
biofilm
lysing
bacterial
cells.
review
explores
current
advancements
bacteriophage
therapy,
focusing
on
potential
treating
biofilm-related
infections.
We
described
mechanisms
by
phages
interact
with
biofilms,
challenges
phage
therapy
implementation,
being
developed
enhance
efficacy
(phage
cocktails,
engineered
phages,
combination
therapies
antibiotics).
Understanding
role
bacteriophages
both
disruption
inhibition
forming
could
pave
way
innovative
treatments
MDR
well
prevention
their
development.
BMC Infectious Diseases,
Год журнала:
2023,
Номер
23(1)
Опубликована: Июль 17, 2023
Abstract
Background
There
are
few
epidemiological
or
molecular
data
on
Escherichia
coli
(E.
)
strains
resistant
to
fosfomycin.
In
this
study,
we
described
the
occurrence
and
characterization
of
fosfomycin-resistant
uropathogenic
E.
(UPEC)
isolated
from
children.
Materials
methods
This
study
was
carried
out
96
isolates
obtained
children
with
urinary
tract
infections.
Two
were
performed
detect
fosfomycin
resistance:
The
agar
dilution
method
rapid
test.
disc
diffusion
done
antimicrobial
susceptibility
pattern
all
isolates.
phylogenetic
grouping
according
modified
Clermont
method.
Conventional
PCR
plasmid-mediated
genes
(
fos
genes)
bla
CTX−M
gene.
Results
Analyses
by
SPSS
software.
A
high
percentage
resistance
(37/96;
38.5%)
reported
among
UPEC
showed
a
higher
rate
than
fosfomycin-susceptible
different
antibiotics.
E
group
(62.2%)
most
predominant
isolates,
followed
Group
B2
(21.6%)
D
(13.5%).
detected
in
21
A3
gene
as
frequent,
which
11
(8),
C2
(4),
A4(1),
A5(1)
genes.
Conclusion
is
first
report
prevalence
Egypt.
All
these
multidrug-resistant
tested
Close
monitoring
such
mandatory
prevent
widespread
dissemination
code
for
antibiotic
resistance.
Frontiers in Microbiology,
Год журнала:
2023,
Номер
14
Опубликована: Июнь 29, 2023
Objectives
The
study
aim
was
to
investigate
multidrug-resistant
(MDR)
plasmids
from
a
collection
of
10
carbapenemase-producing
Klebsiella
pneumoniae
clinical
isolates
identified
within
the
same
healthcare
institution
in
Pakistan.
Full
characterization
MDR
including
structure,
typing
characteristics,
and
AMR
content
as
well
determination
their
plasmid-based
antimicrobial
susceptibility
profiles
were
carried
out.
Methods
Plasmids
isolated
,
corresponding
set
Escherichia
coli
transconjugants,
then
sequenced
using
Nanopore/Illumina
technology
generate
plasmid
hybrid
assemblies.
plasmids,
next
generation
sequencing
(NGS)-based
profiles,
incompatibility
groups,
types,
structure
analyzed
Galileo
platform.
For
E.
NGS-based
compared
NGS-predicted
phenotypes
conventional
broth
microdilution
(BMD)
testing
(AST)
results.
Results
All
K.
(carrying
either
bla
NDM-1
or/and
OXA-48
)
multiple
encoding
34
resistance
genes
(ARGs)
conferring
antimicrobials
6
different
classes.
groups
types
were:
IncC
(types
1
3),
IncFIA
(type
26)
IncFIB,
IncFII
K1,
K2,
K7,
K9),
IncHI1B,
IncL.
None
ESBL
-plasmids
this
previously
described.
Most
NDM-1-
shared
identical
regions
suggesting
potential
genetic
material/plasmid
exchange
between
collection.
majority
transconjugants
correlated
with
both
predicted
AST
Conclusion
This
highlights
complexity
diversity
background
emphasizes
need
for
determine
complete
molecular
monitor
through
transmission
multi-resistant
bacterial
pathogens.
Bulletin of the National Research Centre/Bulletin of the National Research Center,
Год журнала:
2024,
Номер
48(1)
Опубликована: Май 13, 2024
Abstract
Background
Pantoea
agglomerans
(P.
agglomerans)
is
an
environmental
gram-negative
bacterium
that
rarely
infects
humans.
P.
infections
have
never
been
reported
in
Tanzania.
We
investigated
the
occurrence
of
bloodstream
among
neonates
Intensive
Care
Unit
(NICU)
and
their
subsequent
clinical
outcome
occurred
2019.
Methodology
Blood
samples
were
collected
from
with
sepsis.
A
total
19
isolated
17
infected
neonates;
two
had
twice.
14
patient
files
retrieved
medical
records.
Results
The
mean
age
3.75
±
7.95
days.
Isolated
showed
high
sensitivity
to
antibiotics
particularly
chloramphenicol
(94.7%),
piperacillin-tazobactam
(94.7%)
meropenem
(94.7%).
mortality
rate
was
71.4%
35.7%
dying
before
Antibiotic
Susceptibility
Test
results
for
appropriate
management.
Infection
Prevention
Control
(IPC)
team
shut
NICU
thorough
decontamination
which
helped
stop
occurrence.
Conclusions
at
uncommon
aetiology
pathogen
neonatal
sepsis
associated
rates
despite
multiple
antibiotics.
This
calls
strengthening
infection
control
measures
introduction
surveillance
pathogens
capable
causing
human
infections.
Antibiotics,
Год журнала:
2023,
Номер
12(5), С. 929 - 929
Опубликована: Май 18, 2023
The
COVID-19
pandemic
led
to
tremendously
use
of
antimicrobial
due
the
lack
proper
treatment
strategies,
raising
concerns
about
emergence
resistance
(AMR).
This
study
aimed
at
determining
prevalence
and
antibiotic
pattern
selected
bacteria
isolates
in
02
referral
health
facilities
Yaoundé
before
during
era.
We
conducted
a
retrospective
over
period
03
years
(from
1
January
2019
31
December
2021)
bacteriology
units
Central
General
Hospitals
Yaoundé,
Cameroon.
Data
on
genera
(Streptococcus,
Staphylococcus,
Neisseria
meningitidis
Enterobacteriaceae)
as
well
their
corresponding
specifics
antibiotics:
Cefixime,
azythromycin
erythromycin
were
obtained
from
laboratory
records.
global
rate
correlation
with
antibiotics
according
era
was
determined
compared.
For
p
<
0.05,
difference
statistically
significant.
In
all,
426
bacterial
strains
included.
It
appeared
that
highest
number
lowest
recorded
pre-COVID-19
(160
vs.
58.8%
rate).
Conversely,
lower
but
greater
burden
(2020
amount
peak
registered
2020,
year
onset
(120
70%
2020
146
58.9%
2021).
contrast
almost
all
others
groups
where
quite
constant
or
decreasing
years,
Enterobacteriaceae
exhibited
[60%
(48/80)
86.9%
(60/69)
64.5%
(61/95)
2021)].
Concerning
antibiotics,
unlike
erythromycin,
related
resitance
increased
Cefixim
tends
decrease
(2020)
re-increase
one
therafter.
A
significant
association
found
between
resistant
cefixime
(R
=
0.7;
0.0001)
also,
Staphylococcus
0.8;
0.0001).
These
data
showed
herogeneous
MDR
time
suggesting
needs
be
more
closely
monitored.