Genome-wide identification and characterization of FORMIN gene family in cotton (Gossypium hirsutum L.) and their expression profiles in response to multiple abiotic stress treatments
PLoS ONE,
Год журнала:
2025,
Номер
20(3), С. e0319176 - e0319176
Опубликована: Март 3, 2025
FORMIN
proteins
distinguished
by
FH2
domain,
are
conserved
throughout
evolution
and
widely
distributed
in
eukaryotic
organisms.
These
interact
with
various
signaling
molecules
cytoskeletal
proteins,
playing
crucial
roles
both
biotic
abiotic
stress
responses.
However,
the
functions
of
FORMINs
cotton
(Gossypium
hirsutum
L.)
remain
uncovered.
In
this
study,
46
genes
G.
(referred
to
as
GhFH)
were
systematically
identified.
The
gene
structures,
domains,
motifs
these
GhFH
thoroughly
explored.
Phylogenetic
structural
analysis
classified
into
five
distinct
groups.
silico
subcellular
localization,
prediction
suggested
that
across
cellular
compartments,
including
nucleus,
extracellular
space,
cytoplasm,
mitochondria,
cytoskeleton,
plasma
membrane,
endoplasmic
reticulum,
chloroplasts.
Evolutionary
functional
diversification
analyses,
based
on
on-synonymous
(Ka)
synonymous
(Ks)
ratios
duplication
events,
indicated
have
evolved
under
purifying
selection.
cis-acting
elements
may
be
involved
plant
growth,
hormone
regulation,
light
response,
response.
Results
from
transcriptional
factors
TFs
ontology
indicate
regulate
cell
wall
structure
cytoskeleton
dynamics
reacting
signals
associated
environmental
stress.
Additionally,
45
putative
ghr-miRNAs
identified
32
families
targeting
33
genes.
Expression
revealed
GhFH1,
GhFH10,
GhFH20,
GhFH24,
GhFH30
exhibited
highest
levels
expression
red,
blue,
white
conditions.
Further,
GhFH9,
displayed
higher
heat
stress,
while
GhFH20
showed
increased
salt
compared
controls.
result
suggests
could
play
significant
development
stresses.
Overall
findings
enhance
our
understanding
biological
family,
offering
prospects
for
developing
stress-resistant
varieties
through
manipulation
expression.
Язык: Английский
Genome-wide analysis and expression pattern profiling of the DUF789 gene family in soybean (Glycine max L.)
South African Journal of Botany,
Год журнала:
2025,
Номер
180, С. 1 - 11
Опубликована: Март 6, 2025
Язык: Английский
Genome-wide identification and characterization of FORMIN gene family in potato (Solanum tuberosum L.) and their expression profiles in response to drought stress condition
Mst. Sumaiya Khatun,
Md Shohel Ul Islam,
Pollob Shing
и другие.
PLoS ONE,
Год журнала:
2024,
Номер
19(8), С. e0309353 - e0309353
Опубликована: Авг. 26, 2024
Formin
proteins,
characterized
by
the
FH2
domain,
are
critical
in
regulating
actin-driven
cellular
processes
and
cytoskeletal
dynamics
during
abiotic
stress.
However,
no
genome-wide
analysis
of
formin
gene
family
has
yet
to
be
conducted
economically
significant
plant
potato
(
Solanum
tuberosum
L.).
In
this
study,
26
genes
were
identified
genome
(named
as
StFH
),
each
containing
typical
domain
distributed
across
ten
chromosomes.
The
was
categorized
into
seven
subgroups
(A-G)
structure
motif
demonstrated
higher
structural
similarities
within
subgroups.
Besides,
exhibited
ancestry
functional
with
Arabidopsis
.
Ka/Ks
ratio
indicated
that
pairs
evolving
through
purifying
selection,
five
exhibiting
segmental
duplications
two
tandem
duplications.
Subcellular
localization
suggested
most
located
chloroplast
plasma
membrane.
Moreover,
54
cis
-acting
regulatory
elements
(CAREs)
promoter
regions,
some
which
associated
stress
responses.
According
ontology
analysis,
majority
involved
biological
processes,
63
out
74
GO
terms
affecting
actin
polymerization.
Six
major
transcription
factor
families,
including
bZIP,
C2H2,
ERF,
GATA,
LBD,
NAC,
HSF,
regulation
various
stresses,
drought.
Further,
60
unique
microRNAs
targeted
24
expression
response
drought
identified.
14
different
tissues,
particularly
drought-responsive
tissues
such
root,
stem,
shoot
apex,
leaf,
underscores
their
significance
managing
RNA-seq
drought-resistant
Qingshu
No.
9
variety
revealed
potential
role
up-regulated
genes,
StFH2
,
StFH10
StFH19
StFH25
alleviating
Overall,
these
findings
provide
crucial
insights
potatoes
can
utilized
breeding
programs
develop
cultivars
enhanced
drought-tolerant
traits.
Язык: Английский
Genome-wide identification and characterization of FORMIN genes in cotton: Implications for abiotic stress tolerance
Plant Gene,
Год журнала:
2024,
Номер
40, С. 100474 - 100474
Опубликована: Окт. 30, 2024
Язык: Английский
Genome-wide identification, characterization and expression profiles of FORMIN gene family in cotton (Gossypium Raimondii L.)
BMC Genomic Data,
Год журнала:
2024,
Номер
25(1)
Опубликована: Дек. 18, 2024
Gossypium
raimondii
serves
as
a
widely
used
genomic
model
cotton
species.
Its
genetic
influence
to
enhance
fiber
quality
and
ability
adapt
challenging
environments
both
contribute
increasing
production.
The
formins
are
large
protein
family
that
predominately
consists
of
FH1
FH2
domains.
presence
the
formin
domains
highly
regulates
actin
microtubule
filament
in
cytoskeleton
dynamics
confronting
various
abiotic
stresses
such
drought,
salinity,
cold
temperatures.
Язык: Английский