Can We Use Functional Annotation of Prokaryotic Taxa (FAPROTAX) to Assign the Ecological Functions of Soil Bacteria?

Applied Sciences, Год журнала: 2021, Номер 11(2), С. 688 - 688

Опубликована: Янв. 12, 2021

FAPROTAX is a promising tool for predicting ecological relevant functions of bacterial and archaeal taxa derived from 16S rRNA amplicon sequencing. The database was initially developed to predict the function marine species using standard microbiological references. This study, however, has attempted access application in soil environments. We hypothesized that compatible with terrestrial ecosystems. potential use assign bacteria investigated meta-analysis our newly designed experiments. Soil samples two major ecosystems, including agricultural land forest, were collected. Bacterial taxonomy analyzed Illumina sequencing gene assigned by FAPROTAX. presence all functionally OTUs (Operation Taxonomic Units) manually checked peer-reviewed articles as well microbiology books. Overall, we showed sample source not predominant factor limited FAPROTAX, but poor taxonomic identification was. proportion between aquatic non-aquatic ecosystems significantly different (p > 0.05). There strong significant correlations (σ = 0.90–0.95, p < 0.01) number genus or order level OTUs. After manual verification, found more than 97% have previously been detected potentially performed forest soils. further provided information regarding capable N-fixation, P K solubilization, which are three main important elements systems can be integrated increase Consequently, concluded used fast-functional screening grouping data its performance could enhanced through improving functional reference databases.

Язык: Английский

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Soil physicochemical properties and microorganisms jointly regulate the variations of soil carbon and nitrogen cycles along vegetation restoration on the Loess Plateau, China

Plant and Soil, Год журнала: 2023, Номер 494(1-2), С. 413 - 436

Опубликована: Сен. 26, 2023

Язык: Английский

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Untangling the response of fungal community structure, composition and function in soil aggregate fractions to food waste compost addition

The Science of The Total Environment, Год журнала: 2021, Номер 769, С. 145248 - 145248

Опубликована: Янв. 20, 2021

Язык: Английский

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Soil microbial community structure, function and network along a mangrove forest restoration chronosequence

The Science of The Total Environment, Год журнала: 2023, Номер 913, С. 169704 - 169704

Опубликована: Дек. 31, 2023

Язык: Английский

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Long-term effects of two organic amendments on bacterial communities of calcareous mediterranean soils degraded by mining

Journal of Environmental Management, Год журнала: 2020, Номер 271, С. 110920 - 110920

Опубликована: Июнь 24, 2020

Язык: Английский

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Soil bacterial community dynamics following bioaugmentation with Paenarthrobacter sp. W11 in atrazine-contaminated soil

Chemosphere, Год журнала: 2021, Номер 282, С. 130976 - 130976

Опубликована: Май 28, 2021

Язык: Английский

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Crossiella, a Rare Actinomycetota Genus, Abundant in the Environment

Applied Biosciences, Год журнала: 2023, Номер 2(2), С. 194 - 210

Опубликована: Май 6, 2023

The genus Crossiella contains two species, C. equi, causing nocardioform placentitis in horses, and cryophila, an environmental bacterium. Apart from which is not discussed here, rarely reported the literature; thus, it has been included among “rare actinobacteria”, whose isolation frequency very low. After only five reports cover of strains. However, published papers on increased significantly recent years due to extensive use next-generation sequencing (NGS) a huge cascade data that improved our understanding how bacteria occur environment. In last years, found different environments (caves, soils, plant rhizospheres, building stones, etc.). high abundance cave moonmilk indicates this may have active role formation, as evidenced by precipitation calcite, witherite, struvite culture media. This review provides overview Crossiella, particularly caves, discusses its biomineralization processes bioactive compound production.

Язык: Английский

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Effects of hexabromocyclododecane and polyethylene microplastics on soil bacterial communities

The Science of The Total Environment, Год журнала: 2023, Номер 906, С. 167691 - 167691

Опубликована: Окт. 10, 2023

Язык: Английский

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Seasonal variations in the soil microbiota of a temperate wetland in Northeast China in response to nitrogen deposition

CATENA, Год журнала: 2025, Номер 250, С. 108794 - 108794

Опубликована: Фев. 3, 2025

Язык: Английский

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Soil characteristics and bacterial community characteristics of shelterbelts of different tree species in black soil region of China

Scientific Reports, Год журнала: 2025, Номер 15(1)

Опубликована: Март 13, 2025

Abstract To understand how surface soil characteristics and bacterial communities are affected by the establishment of farmland shelterbelts. Five types shelterbelts in mid-west Heilongjiang Province China were selected for study. The physicochemical diversity Populus×xiaohei monoculture (X), Larix gmelinii (L), Pinus sylvestris (Z), mixed forest (ZL), Fraxinus mandshurica (SL), as well fallow land (CK), measured analyzed, respectively. Soil (via high-throughput sequencing) analyzed across 0–20 cm depths. Results showed that significantly altered characteristics: X increased moisture, ammonium nitrogen, microbial biomass nitrogen but reduced aeration. ZL exhibited highest richness enhanced water-holding capacity, aeration, nutrient retention (total organic carbon, phosphorus). outperformed monocultures promoting health, with available potassium (0–10 cm) pH (10–20 identified key drivers community variation. Unique genera like Krasilnikovia Rubrobacter dominated shelterbelt soils, reflecting species-specific effects. Shelterbelts induced accumulation nitrate-nitrogen, potassium, carbon. Overall, forests optimized structure, diversity, cycling, underscoring their ecological benefits sustainable agroforestry. This study highlights critical role enhancing health biodiversity, which essential management practices black region China.

Язык: Английский

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