PLoS ONE,
Год журнала:
2024,
Номер
19(1), С. e0296362 - e0296362
Опубликована: Янв. 11, 2024
The
wild
species
of
the
Coffea
genus
present
a
very
wide
morphological,
genetic,
and
biochemical
diversity.
Wild
are
recognized
more
resistant
to
diseases,
pests,
environmental
variations
than
two
currently
cultivated
worldwide:
C
.
arabica
(Arabica)
canephora
(Robusta).
Consequently,
now
considered
as
crucial
resource
for
adapting
coffee
trees
climate
change.
Within
genus,
79
native
Indian
Ocean
islands
Comoros,
Mayotte,
Mauritius,
Réunion
Madagascar,
out
total
141
taxa
worldwide.
Among
them,
group
9
called
"Baracoffea"
particularly
atypical
in
their
morphology
adaptation
sandy
soils
dry
deciduous
forests
western
Madagascar.
Here,
we
have
attempted
shed
light
on
evolutionary
history
three
Baracoffea
species:
ambongensis
,
boinensis
bissetiae
by
analyzing
chloroplast
nuclear
genomes.
We
assembled
complete
genomes
de
novo
extracted
28,800
SNP
(Single
Nucleotide
Polymorphism)
markers
from
These
data
were
used
phylogenetic
analysis
with
Madagascar
Africa.
Our
new
support
monophyletic
origin
within
but
also
reveal
divergence
sister
clade
four
augagneurii
ratsimamangae
pervilleana
Mcphersonii
(also
vohemarensis)
belonging
Subterminal
botanical
series
living
or
humid
northern
Based
bioclimatic
analysis,
our
work
suggests
that
may
diverged
Malagasy
adapted
specific
low
rainfall
genomic
generated
course
this
will
contribute
understanding
mechanisms
these
singular
species.
Madagascar's
biota
is
hyperdiverse
and
includes
exceptional
levels
of
endemicity.
We
review
the
current
state
knowledge
on
past
terrestrial
freshwater
biodiversity
by
compiling
presenting
comprehensive
data
species
diversity,
endemism,
rates
description
human
uses,
in
addition
to
an
updated
simplified
map
vegetation
types.
report
a
substantial
increase
records
new
science
recent
years;
however,
diversity
evolution
many
groups
remain
practically
unknown
(e.g.,
fungi
most
invertebrates).
Digitization
efforts
are
increasing
resolution
richness
patterns
we
highlight
crucial
role
field-
collections-based
research
for
advancing
identifying
gaps
our
understanding,
particularly
as
corresponds
closely
collection
effort.
Phylogenetic
mirror
that
endemism
analyzed
groups.
humid
forests
centers
because
their
refugia
rapid
radiations.
However,
distinct
other
areas,
such
grassland-woodland
mosaic
Central
Highlands
spiny
forest
southwest,
also
biologically
important
despite
lower
richness.
The
documented
uses
Malagasy
manifold,
with
much
potential
uncovering
useful
traits
food,
medicine,
climate
mitigation.
presented
here
showcase
Madagascar
unique
"living
laboratory"
understanding
complex
interactions
between
people
nature.
gathering
analysis
must
continue
accelerate
if
fully
understand
safeguard
this
subset
Earth's
biodiversity.
Plants,
Год журнала:
2022,
Номер
12(1), С. 102 - 102
Опубликована: Дек. 25, 2022
Coffee
production
is
fragile,
and
the
Intergovernmental
Panel
on
Climate
Change
(IPCC)
reports
indicate
that
climate
change
(CC)
will
reduce
worldwide
yields
average
decrease
coffee-suitable
land
by
2050.
This
article
adopted
systematic
review
approach
to
provide
an
update
of
literature
available
impacts
coffee
other
ecosystem
services
following
framework
proposed
Millenium
Ecosystem
Assessment.
The
identified
148
records
from
considering
effects
variability
production,
covering
countries
mostly
three
continents
(America,
Africa,
Asia).
current
evaluates
analyses
various
single
using
qualitative
quantitative
methodologies.
Impacts
have
been
classified
described
according
different
impact
groups.
However,
research
products
lacked
important
analytical
functions
precise
relationships
between
potential
risks
CC
farming
systems
associated
services.
Consequently,
manuscript
recommends
further
work
their
interrelation
assess
framework.
Frontiers in Plant Science,
Год журнала:
2024,
Номер
14
Опубликована: Янв. 8, 2024
Climate
changes
boosted
the
frequency
and
severity
of
drought
heat
events,
with
aggravated
when
these
stresses
occur
simultaneously,
turning
crucial
to
unveil
plant
response
mechanisms
such
harsh
conditions.
Therefore,
responses/resilience
single
combined
exposure
severe
water
deficit
(SWD)
were
assessed
in
two
cultivars
main
coffee-producing
species:
Coffea
arabica
cv.
Icatu
C.
canephora
Conilon
Clone
153
(CL153).
Well-watered
plants
(WW)
exposed
SWD
under
an
adequate
temperature
25/20°C
(day/night),
thereafter
submitted
a
gradual
increase
up
42/30°C,
14-d
recovery
period
(Rec14).
Greater
protective
was
found
than
37/28°C
and/or
42/30°C
(except
for
HSP70)
both
cultivars,
but
CL153-SWD
showed
larger
variations
leaf
thermal
imaging
crop
stress
index
(CWSI,
85%
rise
at
37/28°C)
stomatal
conductance
(I
G
,
66%
decline
25/20°C).
Both
revealed
great
resilience
37/28°C,
tolerance
limit
surpassed
42/30°C.
Under
combination,
usually
displayed
lower
impacts
on
membrane
permeability,
PSII
function,
likely
associated
various
responses,
mostly
driven
by
(but
often
kept
or
even
strengthened
42/30°C).
These
included
photoprotective
zeaxanthin
lutein,
antioxidant
enzymes
(superoxide
dismutase,
Cu,Zn-SOD;
ascorbate
peroxidase,
APX),
HSP70,
arabinose
mannitol
(involving
de
novo
sugar
synthesis),
contributing
constrain
lipoperoxidation.
Also,
only
strong
reinforcement
glutathione
reductase
activity
combination.
In
general,
activities
antioxidative
declined
Cu,Zn-SOD
CAT
CL153),
HSP70
raffinose
maintained
higher
Icatu,
whereas
markedly
increased
CL153.
Overall,
plasticity
found,
especially
that
greater
responsiveness
coordinated
protection
all
experimental
conditions,
justifying
low
PI
Chr
absence
lipoperoxidation
Despite
clear
Rec14,
some
aftereffects
persisted
(
e.g
.,
membranes),
relevant
terms
repeated
full
stresses.
Agronomy,
Год журнала:
2022,
Номер
12(10), С. 2540 - 2540
Опубликована: Окт. 18, 2022
Coffea
arabica
L.
is
as
a
tropical
crop
that
can
be
grown
under
monocrop
or
agroforestry
(AFS)
systems,
usually
at
altitudes
greater
than
600
m,
with
suitable
environmental
conditions
to
bean
quality.
This
study
aimed
assess
the
effect
of
altitude
(650,
825,
and
935
m)
light
(deep
shade—DS,
moderate
shade—MS
provided
by
native
trees,
full
Sun—FS)
on
physical
chemical
attributes
green
coffee
beans
produced
in
Gorongosa
Mountain.
Regardless
altitude,
(mainly
MS
FS)
scarcely
affected
most
studied
attributes.
Among
few
exceptions
attributes,
mass
tended
lower
values
FS
all
three
altitudes,
whereas
density
increased
650
m.
As
regards
compound
contents,
sporadic
changes
were
found.
The
rises
trigonelline
(MS
m),
soluble
sugars
(FS
decline
p-coumaric
acid
825
may
indicate
an
improved
sensory
profile,
but
rise
FQAs
could
have
negative
impact.
These
results
highlight
relevant
uncertainty
quality
obtained
bean.
Altitude
(from
extended
fruit
maturation
period
four
weeks,
altered
larger
number
traits,
average
sieve
(consistent
tendency),
commercial
homogeneity,
mass,
became
less
yellowish
brighter
m
(b*,
C*
colour
attributes),
pointing
good
trade
quality,
compared
from
Furthermore,
5-CQA
increased,
diCQAs
isomers
declined
(in
conditions).
Altogether,
these
likely
contributed
improve
cup
Caffeine
showed
mostly
inconsistent
variations.
Overall,
(FS,
MS,
DS)
did
not
greatly
consistently
(likely
associated
temperature,
water
availability
(rainfall/fog),
period)
was
major
driver
for
Frontiers in Sustainable Food Systems,
Год журнала:
2024,
Номер
8
Опубликована: Июль 31, 2024
The
sustainability
of
global
coffee
supply
is
threatened
by
production
challenges
worsening
with
every
decade
since
the
turn
21st
century.
Coffee
among
most
popular
beverages
in
world,
and
its
supports
livelihoods
millions
people,
mostly
smallholder
farmers.
With
a
market
value
exceeding
US$130
billion,
industry
source
export
revenue
for
producing
countries,
majority
which
are
developing
nations
Global
South.
Climate
change,
pests,
diseases
continue
to
hamper
productivity,
profitability,
countries’
competitiveness
market.
At
same
time,
demand
continues
rise.
A
crucial
pillar
safeguarding
future
continuously
improved
varieties
suitable
changing
environment,
that
address
needs
farmers
industry.
Yet,
national
breeding
programs
grossly
out
touch
climate
change
reality
dynamics.
Working
isolation,
these
constrained
unstable
funding,
limited
sources
genetic
variability,
inaccessibility
modern
technologies
necessary
accelerate
process.
We
review
here
key
challenges,
status
diversity,
approaches.
Additionally,
we
explore
opportunities
leveraging
pre-competitive
collaborative
approach
encompassing
sharing
germplasm,
cross-border
multi-environment
trials
next-generation
cultivars.
argue
efforts
should
be
informed
all
stakeholders
chain
including
researchers,
farmers,
small
medium-sized
enterprises
investing
processing
roasting,
consumers.
Using
emerging
reviving
producers
Southeast
Asia
Eastern
Africa
as
model,
how
paradigm
shift
from
historically
nation-centric
more
forward-looking
model
could
improve
efficiency
variety
improvement
face
growing
demand.
Frontiers in Sustainable Food Systems,
Год журнала:
2023,
Номер
7
Опубликована: Авг. 15, 2023
Cultivation
of
Robusta
coffee
is
likely
to
gain
importance
because
its
high
disease
resistance
and
climate
envelope.
genetic
resources
conserved
in
field
genebanks
can
play
an
important
role
further
improve
cupping
quality
other
agronomic
traits,
but
such
Coffea
canephora
collections
are
limited
still
poorly
characterized.
In
this
study,
we
characterized
the
composition
historically
until
recently
neglected
INERA
Coffee
Collection
Yangambi
(the
Democratic
Republic
Congo).
We
used
GBS
discover
genome-wide
diversity,
created
validated
a
novel
multiplex
amplicon
sequencing
(HiPlex)
screening
assay
genetically
screen
730
shrubs
Collection,
grouped
clonal
material
delineated
263
accessions
with
unique
fingerprints.
Comparison
reference
three
origins
revealed
that
majority
were
assigned
‘Lula’
cultivar
origin,
four
Congolese
subgroup
A
nine
most
closely
related
local
wild
accessions.
About
one-quarter
was
derived
from
hybridization
between
these
groups,
which
could
result
seed-based
propagation
collection,
breeding
efforts,
or
natural
cross-pollination.
Parental
analyses
discovered
eight
preferentially
accessions,
may
correspond
selected
founders,
direct
descendants
thereof,
whose
seed
once
widely
establish
plantations.
Finally,
two
core
proposed
using
maximization
strategy
(CC-I;
100
accessions)
distance
method
(CC-X;
10
accessions).
Our
study
demonstrates
for
characterization
general
contributes
re-evaluation
exploration
Congo
particular.
Horticulturae,
Год журнала:
2023,
Номер
9(2), С. 215 - 215
Опубликована: Фев. 6, 2023
Water
availability,
light,
management
practices,
and
harvest
time
impacts
on
Coffea
arabica
L.
yield
bean
quality
remain
uncertain.
It
was
hypothesized
that
the
soil
water
light
availability
could
impact
berry
distribution,
yield,
chemical
attributes
within
plant
canopy.
Therefore,
it
aimed
to
study
traits
along
canopy
strata
of
four
coffee
genotypes
(Iapar
59,
Catuaí
99
two
Ethiopian
wild
accessions,
‘E083’
‘E027’),
cultivated
with
(IRR)
without
irrigation
(NI)
in
initial
years.
The
maximum
height
occurrence
lower
NI
than
IRR
plants
both
In
2nd
year,
higher
leaf-to-fruit
ratio
found
under
for
all
genotypes,
except
99,
while
most
regular
distribution
among
obtained
‘E083’,
highest
Iapar
percent
useful
biomass
99.
reduced
lipid
content
more
important
1st
(all
genotypes)
year
59
‘E027’).
As
a
novelty,
composition
additionally
impacted
by
strata.
Proteins
declined
from
bottom
(shaded)
upper
(highly
exposed)
strata,
regardless
genotype
year.
Similar
stratification
observed
caffeine
Although
some
were
somewhat
changed
no
substantial
changes
occurred,
thus
allowing
might
include
entire
not
only
specific
showed
usually
associated
high
quality,
lipid,
sucrose,
soluble
sugar
contents,
lowest
caffeine,
chlorogenic
acids,
phenolic
components
but
less
affected
their
NI.
Based
additional
responses
space
occupation
IRR,
accession
must
be
considered
future
breeding
programs
as
promising
material
intensive
input
conditions.
High
variated
qualified
prominent
genotypes.
Experimental Agriculture,
Год журнала:
2024,
Номер
60
Опубликована: Янв. 1, 2024
Summary
In
Coffea
arabica
,
there
is
a
small
genetic
distance
between
wild
and
bred
genotypes.
However,
coffee
genotypes
express
differential
acclimation
to
multiple
drought
cycles,
allowing
them
successfully
deal
with
water-limiting
conditions.
We
hypothesized
that
cultivars
have
plant
structure
less
sensitive
than
Plant
leaf
architecture
were
analyzed
over
the
strata
of
two
(Iapar
59
Catuaí
99)
Ethiopia
accessions
(‘E083’
‘E027’)
grown
under
rainfed
conditions
irrigation.
During
consecutive
productive
years,
evaluations
taken
at
berry
expansion
(BE1
BE2)
harvest
(BH1
BH2)
phenophases.
The
canopy
was
divided
into
up
four
40
cm
thickness.
Topological
geometric
coding
trees
performed
in
three
botanical
scales
–
metamers,
branches,
plants
multiscale
tree
graphs
(MTGs),
following
VPlants
modeling
platform.
Leaf
branch
area
per
increased
development,
being
always
significantly
higher
irrigated
all
individual
least
water
regime
99,
while
2
nd
order
axis
elevation
angle
relation
horizontal
plane,
ranging
from
0°
90°
‘E083’.
This
finding
partially
corroborated
our
hypothesis
orchestrated
reprograming
leaf/branch
responses
vertical
profile
availability
accessions.
Leaves
4
th
-order
branching
roughly
plagiophile,
1
st
leaves
classified
as
extremophiles.
When
planophile,
irrespective
genotype,
this
pattern
found
lowest,
stratum,
newest
developed
stratum.
Such
not
obligatorily
related
regime,
similar
exception
‘E083’,
very
drought.
Taken
together,
data
suggest
elevations
C.
more
influenced
by
light
distribution
through
i.e.,
self-shading
availability.