A scalable CRISPR-Cas9 gene editing system facilitates CRISPR screens in the malaria parasite Plasmodium berghei
Nucleic Acids Research,
Год журнала:
2025,
Номер
53(2)
Опубликована: Янв. 11, 2025
Abstract
Many
Plasmodium
genes
remain
uncharacterized
due
to
low
genetic
tractability.
Previous
large-scale
knockout
screens
have
only
been
able
target
about
half
of
the
genome
in
more
genetically
tractable
rodent
malaria
parasite
berghei.
To
overcome
this
limitation,
we
developed
a
scalable
CRISPR
system
called
P.
berghei
high-throughput
(PbHiT),
which
uses
single
cloning
step
generate
targeting
vectors
with
100-bp
homology
arms
physically
linked
guide
RNA
(gRNA)
that
effectively
integrate
into
locus.
We
show
PbHiT
coupled
gRNA
sequencing
robustly
recapitulates
known
mutant
phenotypes
pooled
transfections.
Furthermore,
provide
an
online
resource
and
tagging
designs
entire
scale-up
vector
production
using
ligation
approach.
This
work
presents
for
first
time
tool
studying
parasite’s
biology
at
scale.
Язык: Английский
Genome-scale, functional screen of Plasmodium sexual replication
Trends in Parasitology,
Год журнала:
2025,
Номер
unknown
Опубликована: Янв. 1, 2025
Язык: Английский
Not just monkey business
Science,
Год журнала:
2025,
Номер
387(6734), С. 582 - 583
Опубликована: Фев. 6, 2025
Functional
genomics
in
malaria
unlocks
comparative
biology
across
the
family
tree.
Язык: Английский
A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin
Molecular Cell,
Год журнала:
2025,
Номер
unknown
Опубликована: Фев. 1, 2025
Transcription
factors
(TFs)
are
key
regulators
of
gene
expression,
yet
many
their
targets
and
modes
action
remain
unknown.
In
Schizosaccharomyces
pombe,
one-third
TFs
solely
homology
predicted,
with
few
experimentally
validated.
We
created
a
comprehensive
library
89
endogenously
tagged
S.
pombe
TFs,
mapping
protein
chromatin
interactions
using
immunoprecipitation-mass
spectrometry
immunoprecipitation
sequencing.
Our
study
identified
interactors
for
half
the
over
quarter
potentially
forming
stable
complexes.
discovered
DNA-binding
sites
most
across
2,027
unique
genomic
regions,
revealing
motifs
38
uncovering
complex
network
extensive
TF
cross-
autoregulation.
Characterization
largest
family
revealed
conserved
DNA
sequence
preferences
but
diverse
binding
patterns
repressive
heterodimer,
Ntu1/Ntu2,
linked
to
perinuclear
localization.
TFexplorer
webtool
makes
all
data
interactively
accessible,
offering
insights
into
regulatory
mechanisms
broad
biological
relevance.
Язык: Английский
SUN-domain proteins of the malaria parasite Plasmodium falciparum are essential for proper nuclear division and DNA repair
mBio,
Год журнала:
2025,
Номер
unknown
Опубликована: Март 5, 2025
The
protozoan
parasite
Plasmodium
falciparum,
which
is
responsible
for
the
deadliest
form
of
human
malaria,
accounts
over
half
a
million
deaths
year.
These
parasites
proliferate
in
red
blood
cells
by
consecutive
rounds
closed
mitoses
called
schizogony.
Their
virulence
attributed
to
their
ability
modify
infected
adhere
vascular
endothelium
and
evade
immunity
through
antigenic
switches.
Spatial
dynamics
at
nuclear
periphery
were
associated
with
regulation
processes
that
enable
establish
long-term
infection.
However,
our
knowledge
components
envelope
(NE)
remains
limited.
One
major
protein
complexes
NE
linker
nucleoskeleton
cytoskeleton
(LINC)
complex
forms
connecting
bridge
between
cytoplasm
nucleus
interaction
SUN
KASH
domain
proteins.
Here,
we
have
identified
two
SUN-domain
proteins
as
possible
LINC
P.
falciparum
show
proper
expression
essential
parasite's
proliferation
cells,
depletion
leads
formation
membranous
whorls
morphological
changes
NE.
In
addition,
differential
highlights
different
functions
PfSUN2
specifically
heterochromatin,
while
PfSUN1
activation
DNA
damage
response.
Our
data
provide
indications
involvement
crucial
biological
intraerythrocytic
development
cycle
malaria
parasites.
causing
able
thrive
its
host
tight
cellular
processes,
orchestrating
cytoplasmic
machineries
are
separated
envelope.
connect
eukaryotes
complex.
was
implicated
several
important
functions,
role
biology
unknown.
identify
demonstrate
they
parasites'
blood,
cell.
activating
response
association
heterochromatin.
evidence
roles
cell
cycle.
Язык: Английский
A novel SUN1-ALLAN complex coordinates segregation of the bipartite MTOC across the nuclear envelope during rapid closed mitosis in Plasmodium
Опубликована: Апрель 10, 2025
Mitosis
in
eukaryotes
involves
reorganization
of
the
nuclear
envelope
(NE)
and
microtubule-organizing
centres
(MTOCs).
During
male
gametogenesis
Plasmodium,
causative
agent
malaria,
mitosis
is
exceptionally
rapid
highly
divergent.
Within
8
min,
haploid
gametocyte
genome
undergoes
three
replication
cycles
(1N
to
8N),
while
maintaining
an
intact
NE.
Axonemes
assemble
cytoplasm
connect
a
bipartite
MTOC-containing
pole
(NP)
cytoplasmic
basal
body,
producing
eight
flagellated
gametes.
The
mechanisms
coordinating
NE
remodelling,
MTOC
dynamics,
flagellum
assembly
remain
poorly
understood.We
identify
SUN1-ALLAN
complex
as
novel
mediator
remodelling
coordination
during
Plasmodium
gametogenesis.
SUN1,
conserved
protein,
localizes
dynamic
loops
focal
points
at
nucleoplasmic
face
spindle
poles.
ALLAN,
divergent
allantoicase,
has
location
like
that
these
proteins
form
unique
complex,
detected
by
live-cell
imaging,
ultrastructural
expansion
microscopy,
interactomics.
Deletion
either
SUN1
or
ALLAN
genes
disrupts
organization,
leading
body
mis-segregation,
defective
assembly,
impaired
microtubule-kinetochore
attachment,
but
axoneme
formation
remains
intact.
Ultrastructural
analysis
revealed
miscoordination,
aberrant
gametes
lacking
material.
These
defects
block
development
mosquito
parasite
transmission,
highlighting
essential
functions
this
complex.
Язык: Английский
A novel SUN1-ALLAN complex coordinates segregation of the bipartite MTOC across the nuclear envelope during rapid closed mitosis in Plasmodium
Опубликована: Апрель 10, 2025
Mitosis
in
eukaryotes
involves
reorganization
of
the
nuclear
envelope
(NE)
and
microtubule-organizing
centres
(MTOCs).
During
male
gametogenesis
Plasmodium,
causative
agent
malaria,
mitosis
is
exceptionally
rapid
highly
divergent.
Within
8
min,
haploid
gametocyte
genome
undergoes
three
replication
cycles
(1N
to
8N),
while
maintaining
an
intact
NE.
Axonemes
assemble
cytoplasm
connect
a
bipartite
MTOC-containing
pole
(NP)
cytoplasmic
basal
body,
producing
eight
flagellated
gametes.
The
mechanisms
coordinating
NE
remodelling,
MTOC
dynamics,
flagellum
assembly
remain
poorly
understood.We
identify
SUN1-ALLAN
complex
as
novel
mediator
remodelling
coordination
during
Plasmodium
gametogenesis.
SUN1,
conserved
protein,
localizes
dynamic
loops
focal
points
at
nucleoplasmic
face
spindle
poles.
ALLAN,
divergent
allantoicase,
has
location
like
that
these
proteins
form
unique
complex,
detected
by
live-cell
imaging,
ultrastructural
expansion
microscopy,
interactomics.
Deletion
either
SUN1
or
ALLAN
genes
disrupts
organization,
leading
body
mis-segregation,
defective
assembly,
impaired
microtubule-kinetochore
attachment,
but
axoneme
formation
remains
intact.
Ultrastructural
analysis
revealed
miscoordination,
aberrant
gametes
lacking
material.
These
defects
block
development
mosquito
parasite
transmission,
highlighting
essential
functions
this
complex.
Язык: Английский
A CRISPR homing screen finds a chloroquine resistance transporter-like protein of the Plasmodium oocyst essential for mosquito transmission of malaria
Nature Communications,
Год журнала:
2025,
Номер
16(1)
Опубликована: Апрель 24, 2025
Язык: Английский
A novel SUN1-ALLAN complex coordinates segregation of the bipartite MTOC across the nuclear envelope during rapid closed mitosis in Plasmodium
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Дек. 5, 2024
Mitosis
in
eukaryotes
involves
reorganization
of
the
nuclear
envelope
(NE)
and
microtubule-organizing
centres
(MTOCs).
During
male
gametogenesis
Plasmodium,
causative
agent
malaria,
mitosis
is
exceptionally
rapid
highly
divergent.
Within
8
min,
haploid
gametocyte
genome
undergoes
three
replication
cycles
(1N
to
8N),
while
maintaining
an
intact
NE.
Axonemes
assemble
cytoplasm
connect
a
bipartite
MTOC-containing
pole
(NP)
cytoplasmic
basal
body,
producing
eight
flagellated
gametes.
The
mechanisms
coordinating
NE
remodelling,
MTOC
dynamics,
flagellum
assembly
remain
poorly
understood.
We
identify
SUN1-ALLAN
complex
as
novel
mediator
remodelling
coordination
during
Plasmodium
gametogenesis.
SUN1,
conserved
protein,
localizes
dynamic
loops
focal
points
at
nucleoplasmic
face
spindle
poles.
ALLAN,
divergent
allantoicase,
has
location
like
that
these
proteins
form
unique
complex,
detected
by
live-cell
imaging,
ultrastructural
expansion
microscopy,
interactomics.
Deletion
either
SUN1
or
ALLAN
genes
disrupts
organization,
leading
body
mis-segregation,
defective
assembly,
impaired
microtubule-kinetochore
attachment,
but
axoneme
formation
remains
intact.
Ultrastructural
analysis
revealed
miscoordination,
aberrant
gametes
lacking
material.
These
defects
block
development
mosquito
parasite
transmission,
highlighting
essential
functions
this
complex.
Язык: Английский