Polar solvation molecular dynamics, quantum reactivity (ELF, HOMO–LUMO, NBO) studies, spectroscopy (FT-IR, UV), and the antibiotic potential of carbazide derivative via in-silico molecular docking DOI

Nagoor Mujafarkani,

Eze A. Adindu, Obinna C. Godfrey

и другие.

Zeitschrift für Physikalische Chemie, Год журнала: 2024, Номер 238(6), С. 1061 - 1088

Опубликована: Фев. 14, 2024

Abstract Recently, the treatment of bacterial infection has been very worrisome as a decline in antibiotic sensitivity is hitting majority world population. Among many infection’s causing agents, Enterococcus species and Mycoplasma pneumonia are highly threatening because their resistance to powerful antibiotics such vancomycin, erythromycin, azithromycin. Herein, effect polar (DMSO, EtOH, MeOH, H 2 O) solvation on quantum chemical parameters, molecular structure, spectroscopy, antimicrobial potential p -phenylenediamine-thiosemicarbazide-formaldehyde (PTSF) terpolymer presented within framework density functional theory (DFT), dynamics, docking approach. ethanol was keenly observed with most insightful properties across all analyses specifically by its high energy gap (4.6344 eV) which accounted for stability compound. The revealed binding affinities PSTF respect best modes −4.6 kcal/mol LYS 288 bond distance 2.82 Å 5V2M −5.1 ASN 770 at 2.27 Å, GLU 767 2.61 ARG 777 3.69 775 2.57 ALA 763 2.86 6rj1. From result obtained, studied compound higher affinity active site 6RJ1 than that 5V2M. This suggests greater efficacy inhibiting growth M. pneumoniae vancomycin resistant faecalis . Hence, further vitro vivo studies should delve into more exploration reported ligand.

Язык: Английский

Advances on carbon nanomaterials and their applications in medical diagnosis and drug delivery DOI
Gokul Paramasivam, Vishnu Vardhan Palem,

Simi Meenakshy

и другие.

Colloids and Surfaces B Biointerfaces, Год журнала: 2024, Номер 241, С. 114032 - 114032

Опубликована: Июнь 13, 2024

Язык: Английский

Процитировано

30

Exploring the optoelectronic properties of Flavylium cations as acceptors in organic solar Cells: DFT/TD-DFT investigations DOI
Sina Pourebrahimi, Majid Pirooz

Solar Energy, Год журнала: 2024, Номер 275, С. 112617 - 112617

Опубликована: Май 15, 2024

Язык: Английский

Процитировано

13

Surface modification of transition metals (TM: Mn, Fe, Co) decorated Pt-doped carbon quantum dots (Pt@CQDs) nanostructure as nonenzymatic sensors for nitrotyrosine (a biomarker for Alzheimer): Perspective from density functional theory DOI
Innocent Benjamin, Bassey O. Ekpong, Hewa Y. Abdullah

и другие.

Materials Science in Semiconductor Processing, Год журнала: 2024, Номер 174, С. 108245 - 108245

Опубликована: Фев. 20, 2024

Язык: Английский

Процитировано

8

Quantum chemical and MD investigations on molecular structure, vibrational (FT-IR and FT-Raman), electronic, thermal, topological, molecular docking analysis of 1-carboxy-4-ethoxybenzene DOI Creative Commons

C.P. Devipriya,

S. Deepa,

J. Udayaseelan

и другие.

Chemical Physics Impact, Год журнала: 2024, Номер 8, С. 100495 - 100495

Опубликована: Янв. 26, 2024

The current study focuses on the combined experimental and theoretical FT-IR FT-Raman spectra of 1-carboxy-4-ethoxybenzene (1C4EB), to obtain vibrational frequencies optimal geometrical parameters by HF DFT. For 1C4EB, kind intramolecular interactions their stabilization were performed Natural Bond Orbital analysis. Nonlinear optical p properties conclusive evidence for ICT also analyzed. electronic energies absorption in different mediums determined. Furthermore, Mulliken charges distribution, molecular electrostatic potential maps, condensed Fukui function thermodynamic calculated. topological IRI analyzed with Multiwfn program. In docking, target proteins 4ULE 2EEP used investigate sugar phosphatase Prolyl aminopeptidase inhibitor properties. least binding energy -6.7 kcal/mol is observed selected protein 4ULE. dynamics complex between – ligand, free calculated Poisson-Boltzmann surface area method.

Язык: Английский

Процитировано

5

Antimicrobial activity of guanidine-based terpolymers: Synthesis, Spectroscopy (FT-IR, 1H, and 13C NMR), Quantum chemical investigation, and molecular docking DOI

N. Mujafarkani,

Daniel C. Agurokpon, Rania A. Hussien

и другие.

Journal of Molecular Structure, Год журнала: 2023, Номер 1298, С. 137005 - 137005

Опубликована: Ноя. 4, 2023

Язык: Английский

Процитировано

12

The molecular structure, vibrational spectra, solvation effect, non-covalent interactions investigations of psilocin DOI
Utkirjon Holikulov, Аleksandr S. Kazachenko, Noureddine Issaoui

и другие.

Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy, Год журнала: 2024, Номер 320, С. 124600 - 124600

Опубликована: Июнь 5, 2024

Язык: Английский

Процитировано

4

“2‐Hydroxy‐N‐Methyl‐Phenylquinolin‐3‐Amine” and “Synthesis, FT‐IR VEDA, DFT Quantum Reactivity, Molecular Interactions, Molecular Docking against Leukemia Virus, and ADME/Tox Investigation” DOI

Maniyan Vijayarathinam,

Alagesan Kannan,

Pachaimuthu Akilan

и другие.

ChemistrySelect, Год журнала: 2025, Номер 10(12)

Опубликована: Март 1, 2025

Abstract A greener, efficient approach has been developed to synthesize the biologically active 2‐hydroxyphenyl quinoline. The structure is confirmed through detailed spectral analyzes, including FT‐IR, ¹H‐NMR, ¹ 3 C‐NMR, and GC‐MS techniques. Structural validation further performed by comparing experimental data with theoretical results obtained Vibrational Energy Distribution Analysis (VEDA) software, which facilitates PEDbased on FT‐IR wavenumbers. DFT calculations optimize structural parameters analyze frontier molecular orbitals (FMOs). Topological electrostatic potential surface (MEPS) mapping, Mulliken atomic charge analysis, while reduced density gradient (RDG) analysis identifies van der Waals interactions. Additional electron localization function (ELF) localized orbital locator (LOL), highlighting NLO properties, B3LYP/6–31G(d,p)/Lanl2DZ of NMR chemical shifts for both free interacting structures proved highly promising in assisting experimentalists identification. Molecular docking studies of‐ demonstrate its mechanism action as a inhibitor Moloney murine leukemia virus cancer protease (PDB ID: 1MN8). compound exhibits strong binding affinity ligand‐receptor complex. Furthermore, ADME‐Tox descriptors are analyzed compared FDA‐approved phenylquinoline drugs, Mitapivat Olutasidenib, showing favorable pharmacokinetic properties. These findings suggest compound's candidate developing therapeutic agents.

Язык: Английский

Процитировано

0

Molecular docking, QSAR, and ADME studies of some pyrrolo[1, 2-a] benzimidazole-based quinones as novel topoisomerase 2 beta (TOP2β) inhibitors DOI Creative Commons
Rahul D. Jawarkar,

Anam.N. Khan,

Dhanashri R. Bhagat

и другие.

Chemical Physics Impact, Год журнала: 2024, Номер 8, С. 100479 - 100479

Опубликована: Янв. 27, 2024

In recent years, selective topoisomerase II inhibitors have drawn interest in the development of novel antitumor compounds to an extraordinary degree. As potent inhibitors, pyrrolo[1, 2-a]-benzimidazole quinones with a 6-aziridinyl group (PBIs) and 6-acetamido (APBIs) been developed. Quantitative structure-activity relationships (QSAR) analysis comprises multivariate GA-MLR (Genetic Algorithm-Multilinear Regression) model adequate statistical performance (R2: 0.92, Q2LMO: 0.86, etc.). QSAR (Quantitative Structure Activity Relationships) modelling, Py Descriptors were cast off envisage anticancer potential for set Pyrrolo [1, having (APBIs). The docking results 12 scaffolds revealed that namely 6 (binding affinity -8.225 kcal/mol), 1 -7.8466 5 -7.8814 23 -7.8101 kcal/mol) found possess highest binding receptor. Furthermore, A post-authorization safety study prediction (PASS) discovered may act as inhibitors. Finally, ADME investigation reveals compound 33 6, 5, 1, lead-like candidate cancer treatment.

Язык: Английский

Процитировано

3

Targeting small druggable compounds against 3RZE histamine H1 receptor as potential of anti-allergic drug applying molecular modeling approach DOI Creative Commons

Adeel Akram,

Chia‐Hung Su, Chun-Chong Fu

и другие.

Future Journal of Pharmaceutical Sciences, Год журнала: 2024, Номер 10(1)

Опубликована: Июнь 6, 2024

Abstract Background Allergic disorders, prevalent global health concerns, afflict a substantial portion of the world’s population. These maladies result from an exaggerated immune system response to ordinarily innocuous substances, such as pollen, dust mites, and specific dietary components. Clinical manifestations this heightened include itching, swelling, respiratory impairment, often accompanied by releasing mediators like histamine. The pathophysiological mechanisms allergy disorders are intricate, arising complex interplay between genetic environmental factors. While clinical presentations may vary, all conditions share common foundation in dysregulated allergens. Result current aim study was identify innovative anti-allergic agents capable inhibiting histamine effectively mitigating allergic reactions utilizing computer-aided drug design approach discovery studio (DS) 2022 v 23.1.1 package. overarching identifying potential candidates targeting active site within H1 receptor complex; therefore, collection 4000 small druggable compounds curated ZINC, PubChem, DRUG BANK databases sources. Four appeared promising after assessing docking scores binding energies. Notably, Compound ID 34154, recognized tymazoline, showed highest affinity for 3RZE, suggesting it be most choice more research. Further chemoinformatic ADMET (absorption, distribution, metabolism, excretion, toxicity) analyses were conducted assess drug-like qualities chosen molecule. In addition, bioisosteric substitution techniques employed enhance tymazoline’s characteristics. Conclusion Tymazoline shows strong with 3RZE verified drug-likeness criteria inhibit disorders. Furthermore, molecular dynamics (MD) studies corroborated agent, demonstrating contact ligand that is well defined stable.

Язык: Английский

Процитировано

3

Theoretical insights into the interaction of 6-Thioguanine anticancer drug with β-Cyclodextrin as a pharmaceutical Nanocarrier via density functional theory DOI Creative Commons
Sulaiman Shams, Masoumeh Shahi, Fatemeh Azarakhshi

и другие.

Results in Chemistry, Год журнала: 2025, Номер unknown, С. 102159 - 102159

Опубликована: Фев. 1, 2025

Язык: Английский

Процитировано

0