Research horizons for invasive marine species detection with eDNA/eRNA DOI Creative Commons
Simon Jarman, Fran Ackermann, Michael J. Marnane

и другие.

Research Square (Research Square), Год журнала: 2023, Номер unknown

Опубликована: Дек. 4, 2023

Abstract The global marine ecosystem is changing rapidly as the result of biogeochemical cycles and structure being altered by industrial civilization. Invasive species (IMS) are one most damaging regional consequences human activity, easily attributable to specific processes. This makes IMS introduction tractable threats for management with appropriate policies. Once established, a different set policies required either restrict spread, or attempt local eradication. key tool damage mitigation rapid, widely deployable detection. Environmental Nucleic Acids (eNA), combining environmental DNA (eDNA) RNA (eRNA) analyses, have emerged valuable tools sensitive, cost-effective readily detection IMS. Methods eNA still developed through widespread active research community, so identifying limitations current processes will help prioritise eNA-based research. We analysed synthesised opinions expert managers researchers in Australia New Zealand about knowledge gaps needs synthesis was placed context literature on what technologies currently providing an tool; problems exist technology; could be done improve this general approach. Our analyses produced list priorities that chart path towards best possible systems - Utopia.

Язык: Английский

Environmental DNA reveals spatial and temporal variation in fish communities before the 10-year fishing ban in the Poyang Lake Basin DOI
Chunhua Zhou,

Shaoqing Jian,

Zhizhong Jiang

и другие.

Fisheries Research, Год журнала: 2024, Номер 281, С. 107192 - 107192

Опубликована: Сен. 27, 2024

Язык: Английский

Процитировано

0

Bridging the gaps through environmental DNA: A review of critical considerations for interpreting the biodiversity data in coral reef ecosystems DOI
Shahnawaz Hassan, Bikram Singh Bali,

Aarif Yaseen

и другие.

Marine Pollution Bulletin, Год журнала: 2024, Номер 209, С. 117242 - 117242

Опубликована: Ноя. 6, 2024

Язык: Английский

Процитировано

0

TerraDactyl: A tool for connecting environmental data to when and where DOI Creative Commons
Ariel Levi Simons,

Hector Baez,

Neha Acharya‐Patel

и другие.

Ecological Informatics, Год журнала: 2024, Номер unknown, С. 102974 - 102974

Опубликована: Дек. 1, 2024

Язык: Английский

Процитировано

0

rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R DOI Open Access
Emily Curd,

Luna Gal,

Ramón Gallego

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2023, Номер unknown

Опубликована: Июнь 3, 2023

Key to making accurate taxonomic assignments are curated, comprehensive reference barcode databases. However, the generation and curation of such databases has remained challenging given large continuously growing volumes DNA sequence data novel targets. Monitoring research applications require a greater diversity specialized gene regions targeted taxa meet classification goals then currently curated by professional staff. Thus, there is need for an easy implement tool that can generate metabarcoding libraries any bespoke locus. We address this reimagining CRUX from Anacapa Toolkit present rCRUX package in R. The typical workflow involves searching plausible seed amplicons (

Язык: Английский

Процитировано

1

Editorial overview: Novel approaches to gauge the human footprint on the biosphere DOI
Luis F. De León, Jaime Martínez-Urtaza

Current Opinion in Biotechnology, Год журнала: 2023, Номер 84, С. 103018 - 103018

Опубликована: Ноя. 3, 2023

Язык: Английский

Процитировано

0

Research horizons for invasive marine species detection with eDNA/eRNA DOI Creative Commons
Simon Jarman, Fran Ackermann, Michael J. Marnane

и другие.

Research Square (Research Square), Год журнала: 2023, Номер unknown

Опубликована: Дек. 4, 2023

Abstract The global marine ecosystem is changing rapidly as the result of biogeochemical cycles and structure being altered by industrial civilization. Invasive species (IMS) are one most damaging regional consequences human activity, easily attributable to specific processes. This makes IMS introduction tractable threats for management with appropriate policies. Once established, a different set policies required either restrict spread, or attempt local eradication. key tool damage mitigation rapid, widely deployable detection. Environmental Nucleic Acids (eNA), combining environmental DNA (eDNA) RNA (eRNA) analyses, have emerged valuable tools sensitive, cost-effective readily detection IMS. Methods eNA still developed through widespread active research community, so identifying limitations current processes will help prioritise eNA-based research. We analysed synthesised opinions expert managers researchers in Australia New Zealand about knowledge gaps needs synthesis was placed context literature on what technologies currently providing an tool; problems exist technology; could be done improve this general approach. Our analyses produced list priorities that chart path towards best possible systems - Utopia.

Язык: Английский

Процитировано

0