Research horizons for invasive marine species detection with eDNA/eRNA DOI Creative Commons
Simon Jarman, Fran Ackermann, Michael J. Marnane

et al.

Research Square (Research Square), Journal Year: 2023, Volume and Issue: unknown

Published: Dec. 4, 2023

Abstract The global marine ecosystem is changing rapidly as the result of biogeochemical cycles and structure being altered by industrial civilization. Invasive species (IMS) are one most damaging regional consequences human activity, easily attributable to specific processes. This makes IMS introduction tractable threats for management with appropriate policies. Once established, a different set policies required either restrict spread, or attempt local eradication. key tool damage mitigation rapid, widely deployable detection. Environmental Nucleic Acids (eNA), combining environmental DNA (eDNA) RNA (eRNA) analyses, have emerged valuable tools sensitive, cost-effective readily detection IMS. Methods eNA still developed through widespread active research community, so identifying limitations current processes will help prioritise eNA-based research. We analysed synthesised opinions expert managers researchers in Australia New Zealand about knowledge gaps needs synthesis was placed context literature on what technologies currently providing an tool; problems exist technology; could be done improve this general approach. Our analyses produced list priorities that chart path towards best possible systems - Utopia.

Language: Английский

Environmental DNA reveals spatial and temporal variation in fish communities before the 10-year fishing ban in the Poyang Lake Basin DOI
Chunhua Zhou,

Shaoqing Jian,

Zhizhong Jiang

et al.

Fisheries Research, Journal Year: 2024, Volume and Issue: 281, P. 107192 - 107192

Published: Sept. 27, 2024

Language: Английский

Citations

0
Bridging the gaps through environmental DNA: A review of critical considerations for interpreting the biodiversity data in coral reef ecosystems DOI
Shahnawaz Hassan, Bikram Singh Bali,

Aarif Yaseen

et al.

Marine Pollution Bulletin, Journal Year: 2024, Volume and Issue: 209, P. 117242 - 117242

Published: Nov. 6, 2024

Language: Английский

Citations

0
TerraDactyl: A tool for connecting environmental data to when and where DOI Creative Commons
Ariel Levi Simons,

Hector Baez,

Neha Acharya‐Patel

et al.

Ecological Informatics, Journal Year: 2024, Volume and Issue: unknown, P. 102974 - 102974

Published: Dec. 1, 2024

Language: Английский

Citations

0
rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R DOI Open Access
Emily Curd,

Luna Gal,

Ramón Gallego

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown

Published: June 3, 2023

Key to making accurate taxonomic assignments are curated, comprehensive reference barcode databases. However, the generation and curation of such databases has remained challenging given large continuously growing volumes DNA sequence data novel targets. Monitoring research applications require a greater diversity specialized gene regions targeted taxa meet classification goals then currently curated by professional staff. Thus, there is need for an easy implement tool that can generate metabarcoding libraries any bespoke locus. We address this reimagining CRUX from Anacapa Toolkit present rCRUX package in R. The typical workflow involves searching plausible seed amplicons (

Language: Английский

Citations

1
Editorial overview: Novel approaches to gauge the human footprint on the biosphere DOI
Luis F. De León, Jaime Martínez-Urtaza

Current Opinion in Biotechnology, Journal Year: 2023, Volume and Issue: 84, P. 103018 - 103018

Published: Nov. 3, 2023

Language: Английский

Citations

0
Research horizons for invasive marine species detection with eDNA/eRNA DOI Creative Commons
Simon Jarman, Fran Ackermann, Michael J. Marnane

et al.

Research Square (Research Square), Journal Year: 2023, Volume and Issue: unknown

Published: Dec. 4, 2023

Abstract The global marine ecosystem is changing rapidly as the result of biogeochemical cycles and structure being altered by industrial civilization. Invasive species (IMS) are one most damaging regional consequences human activity, easily attributable to specific processes. This makes IMS introduction tractable threats for management with appropriate policies. Once established, a different set policies required either restrict spread, or attempt local eradication. key tool damage mitigation rapid, widely deployable detection. Environmental Nucleic Acids (eNA), combining environmental DNA (eDNA) RNA (eRNA) analyses, have emerged valuable tools sensitive, cost-effective readily detection IMS. Methods eNA still developed through widespread active research community, so identifying limitations current processes will help prioritise eNA-based research. We analysed synthesised opinions expert managers researchers in Australia New Zealand about knowledge gaps needs synthesis was placed context literature on what technologies currently providing an tool; problems exist technology; could be done improve this general approach. Our analyses produced list priorities that chart path towards best possible systems - Utopia.

Language: Английский

Citations

0