Genomic and Epigenomic Mechanisms of the Interaction between Parasitic and Host Plants DOI Open Access
В. В. Ашапкин,

Lyudmila I. Kutueva,

N. I. Aleksandrushkina

и другие.

International Journal of Molecular Sciences, Год журнала: 2023, Номер 24(3), С. 2647 - 2647

Опубликована: Янв. 31, 2023

Parasitic plants extract nutrients from the other to finish their life cycle and reproduce. The control of parasitic weeds is notoriously difficult due tight physical association close biological relationship hosts. differ in susceptible host ranges, species susceptibility plants. Current data show that adaptations various hosts are largely genetically determined. However, multiple cases rapid adaptation homogenous weed populations new strongly suggest involvement epigenetic mechanisms. Recent progress genome-wide analyses gene expression features revealed many molecular details plants’ interactions with experimental obtained last several years common have independently evolved different lines In this review we discuss most interesting interaction between

Язык: Английский

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants DOI Creative Commons
Michiel Van Bel,

Francesca Silvestri,

Eric Weitz

и другие.

Nucleic Acids Research, Год журнала: 2021, Номер 50(D1), С. D1468 - D1474

Опубликована: Окт. 13, 2021

PLAZA is a platform for comparative, evolutionary, and functional plant genomics. It makes broad set of genomes, data types analysis tools available to researchers through user-friendly website, an API, bulk downloads. In this latest release the platform, we are integrating record number 134 high-quality split up over two instances: Dicots 5.0 Monocots 5.0. This genomes corresponds with massive expansion in species when compared 4.0, which offered access 71 species, 89% overall increase. The contains information 5 882 730 genes, offers pre-computed gene families phylogenetic trees 274 684 protein-coding genes. also comes new updated features: BED import functionality workbench, improved interactive visualizations enrichments genome-wide mapping sets, fully redesigned extended API. Taken together, version support biologists working on different within green lineage provides efficient versatile toolbox All releases accessible from portal website: https://bioinformatics.psb.ugent.be/plaza/.

Язык: Английский

Процитировано

182

Molecular mechanisms of adaptive evolution in wild animals and plants DOI Open Access
Yibo Hu, Xiaoping Wang, Yong‐Chao Xu

и другие.

Science China Life Sciences, Год журнала: 2023, Номер 66(3), С. 453 - 495

Опубликована: Янв. 13, 2023

Язык: Английский

Процитировано

58

Technology-enabled great leap in deciphering plant genomes DOI
Lingjuan Xie, Xiaojiao Gong, Kun Yang

и другие.

Nature Plants, Год журнала: 2024, Номер 10(4), С. 551 - 566

Опубликована: Март 20, 2024

Язык: Английский

Процитировано

39

Horizontal gene transfer in eukaryotes: aligning theory with data DOI
Patrick J. Keeling

Nature Reviews Genetics, Год журнала: 2024, Номер 25(6), С. 416 - 430

Опубликована: Янв. 23, 2024

Язык: Английский

Процитировано

31

A chromosome‐scale Gastrodia elata genome and large‐scale comparative genomic analysis indicate convergent evolution by gene loss in mycoheterotrophic and parasitic plants DOI Open Access
Yuxing Xu, Yunting Lei, Zhongxiang Su

и другие.

The Plant Journal, Год журнала: 2021, Номер 108(6), С. 1609 - 1623

Опубликована: Окт. 15, 2021

Mycoheterotrophic and parasitic plants are heterotrophic parasitize on fungi plants, respectively, to obtain nutrients. Large-scale comparative genomics analysis has not been conducted in mycoheterotrophic or between these two groups of parasites. We assembled a chromosome-level genome the fully plant Gastrodia elata (Orchidaceae) performed genomic analyses genomes G. four orchids (initial mycoheterotrophs), three (Cuscuta australis, Striga asiatica, Sapria himalayana), 36 autotrophs from various angiosperm lineages. It was found that while hemiparasite S. asiatica initial orchids, approximately 4-5% conserved orthogroups were lost, C. australis both lost 10% orthogroups, indicating increased heterotrophy is positively associated with gene loss. Importantly, many genes essential for autotrophs, including those involved photosynthesis, circadian clock, flowering time regulation, immunity, nutrient uptake, root leaf development, convergently australis. The high-quality will facilitate future studies physiology, ecology, evolution our findings highlight critical role loss lifestyles.

Язык: Английский

Процитировано

60

The minicircular and extremely heteroplasmic mitogenome of the holoparasitic plant Rhopalocnemis phalloides DOI Creative Commons
Runxian Yu, Chenyu Sun, Yan Zhong

и другие.

Current Biology, Год журнала: 2021, Номер 32(2), С. 470 - 479.e5

Опубликована: Дек. 13, 2021

Язык: Английский

Процитировано

51

Life history, diversity, and distribution in parasitic flowering plants DOI Creative Commons
Luiza Teixeira‐Costa, Charles C. Davis

PLANT PHYSIOLOGY, Год журнала: 2021, Номер 187(1), С. 32 - 51

Опубликована: Июнь 15, 2021

A review of parasitic plant diversity and outstanding disjunct distributions according to an updated functional classification based on these plants’ life cycles.

Язык: Английский

Процитировано

47

Comparative genomics of orobanchaceous species with different parasitic lifestyles reveals the origin and stepwise evolution of plant parasitism DOI Creative Commons
Yuxing Xu,

Jingxiong Zhang,

Canrong Ma

и другие.

Molecular Plant, Год журнала: 2022, Номер 15(8), С. 1384 - 1399

Опубликована: Июль 18, 2022

Язык: Английский

Процитировано

33

Invited Review Beyond parasitic convergence: unravelling the evolution of the organellar genomes in holoparasites DOI Open Access
M. Virginia Sanchez‐Puerta, Luis Federico Ceriotti, Leonardo Martin Gatica‐Soria

и другие.

Annals of Botany, Год журнала: 2023, Номер 132(5), С. 909 - 928

Опубликована: Июль 27, 2023

The molecular evolution of organellar genomes in angiosperms has been studied extensively, with some lineages, such as parasitic ones, displaying unique characteristics. Parasitism emerged 12 times independently angiosperm evolution. Holoparasitism is the most severe form parasitism, and found ~10 % angiosperms. Although a few holoparasitic species have examined at level, reports involve plastomes instead mitogenomes. Parasitic plants establish vascular connections their hosts through haustoria to obtain water nutrients, which facilitates exchange genetic information, making them more susceptible horizontal gene transfer (HGT). HGT prevalent mitochondria than chloroplast or nuclear compartments.

Язык: Английский

Процитировано

20

Rampant loss of universal metazoan genes revealed by a chromosome-level genome assembly of the parasitic Nematomorpha DOI Creative Commons
Tauana Cunha,

Bruno A.S. de Medeiros,

Arianna Lord

и другие.

Current Biology, Год журнала: 2023, Номер 33(16), С. 3514 - 3521.e4

Опубликована: Июль 18, 2023

Язык: Английский

Процитировано

18