The rootstock shape microbial diversity and functionality in the rhizosphere of Vitis vinifera L. cultivar Falanghina DOI Creative Commons
Daniela Zuzolo,

Maria Antonietta Ranauda,

Maria Maisto

и другие.

Frontiers in Plant Science, Год журнала: 2023, Номер 14

Опубликована: Авг. 14, 2023

The rhizosphere effect occurring at the root-soil interface has increasingly been shown to play a key role in plant fitness and soil functionality, influencing plants resilience. Here, for first time, we investigated whether rootstock genotype on which Vitis vinifera L. cultivar Falanghina is grafted can influence microbiome. Specifically, evaluated extent 5BB 1103P rootstocks are able shape microbial diversity of environment. Moreover, explored potential function community its shift under influence. We seven vineyards subjected same pedo-climatic conditions, similar age, training system management collected twelve samples metagenomic analyses composite physical-chemical properties. In this study, used 16S rRNA gene-based analysis investigate bacterial composition. Liner discriminant size (LEFSe) was conducted biomarker discovery. functional composition sampled communities determined using PICRUSt, based marker gene sequencing profiles. Soil involved determination texture, pH, Cation Exchange Capacity (CSC), Organic Carbon (OC), electrical conductivity (EC), calcium (Ca), magnesium (Mg), potassium (K) content, Phosphorous (P), nitrogen (N). latter revealed that features were quite homogenous. data showed alpha-diversity (Observed OTUs) significantly increased microbiota. Irrespective cultivar, Pseudomonadota dominant phylum, followed by Actinomycetota > Bacteroidota Thermoproteota. However, major phyla differentiating associated with different types. At genus level, several taxa belonging Alphaproteobacteria classes enriched rhizosphere. Investigating profile, found most enzyme-encoding genes N cycling more abundant soil. C cycle Plant Growth Promotion (PGP) functionality. Our results suggest not only recruit specific communities, but also traits within

Язык: Английский

Climate change impacts and adaptations of wine production DOI Creative Commons
Cornelis van Leeuwen, Giovanni Sgubin, Benjamin Bois

и другие.

Nature Reviews Earth & Environment, Год журнала: 2024, Номер 5(4), С. 258 - 275

Опубликована: Март 26, 2024

Climate change is affecting grape yield, composition and wine quality. As a result, the geography of production changing. In this Review, we discuss consequences changing temperature, precipitation, humidity, radiation CO2 on global explore adaptation strategies. Current winegrowing regions are primarily located at mid-latitudes (California, USA; southern France; northern Spain Italy; Barossa, Australia; Stellenbosch, South Africa; Mendoza, Argentina, among others), where climate warm enough to allow ripening, but without excessive heat, relatively dry avoid strong disease pressure. About 90% traditional in coastal lowland Spain, Italy, Greece California could be risk disappearing by end century because drought more frequent heatwaves with change. Warmer temperatures might increase suitability for other (Washington State, Oregon, Tasmania, France) driving emergence new regions, like United Kingdom. The degree these changes strongly depends level temperature rise. Existing producers can adapt certain warming plant material (varieties rootstocks), training systems vineyard management. However, adaptations not maintain economically viable all areas. Future research should aim assess economic impact strategies applied large scale. Grapes produced winemaking highly susceptible climate, particularly extreme heat drought. This Review examines existing emerging recommends measures increasing modified drought, pest

Язык: Английский

Процитировано

58

The Health of Vineyard Soils: Towards a Sustainable Viticulture DOI Creative Commons
Fernando Visconti, Roberto López, Miguel Ángel Olego

и другие.

Horticulturae, Год журнала: 2024, Номер 10(2), С. 154 - 154

Опубликована: Фев. 6, 2024

Soil health encompasses the effects uppermost part of land have on human wellbeing in a broad sense, because soil is where most food ultimately comes from, and it more inconspicuously fulfils other ecological functions, as important feeding, for our planet’s welfare, which ours. Viticulture exploits soil’s resources from wine, its valuable produce, boasts to obtain some unique quality traits, are wrapped within terroir concept. However, using conventional methods, viticulture also has harsh impacts soil, thus jeopardizing sustainability. How long will expression remain unchanged vineyard degradation goes on? While this question difficult answer complex nature terroirs, undeniable that management practices leave, general, ample room improvement, their impact vineyards much environment. In response, must adopt enable long-lasting preservation grounds both on-farm off-farm benefits. regard, increase organic matter alongside enhancement biological community key they benefit many properties physical, chemical, nature, determining healthy functioning, vines may thrive time, whereas surroundings minimally disturbed. present review, importance relates discussed, factors processes threaten winegrowing areas presented, successful soil-health shown, future research trends identified researchers stakeholders special agricultural industry.

Язык: Английский

Процитировано

19

Microbial colonisation rewires the composition and content of poplar root exudates, root and shoot metabolomes DOI Creative Commons

F. Fracchia,

Frédéric Guinet,

Nancy L. Engle

и другие.

Microbiome, Год журнала: 2024, Номер 12(1)

Опубликована: Сен. 12, 2024

Trees are associated with a broad range of microorganisms colonising the diverse tissues their host. However, early dynamics microbiota assembly from root to shoot axis and how it is linked exudates metabolite contents remain unclear. Here, we characterised fungal bacterial communities altering as well metabolomes in parallel establishment poplar cuttings (Populus tremula x tremuloides clone T89) over 30 days growth. Sterile were planted natural or gamma irradiated soils. Bulk rhizospheric soils, collected day 1 track dynamic changes different habitats by DNA metabarcoding. Root metabolites analysed gas chromatography-mass spectrometry.

Язык: Английский

Процитировано

11

The hidden side of interaction: microbes and roots get together to improve plant resilience DOI Creative Commons
Raffaella Balestrini, Fabiano Sillo, Raphaël Boussageon

и другие.

Journal of Plant Interactions, Год журнала: 2024, Номер 19(1)

Опубликована: Март 11, 2024

Plants have evolved various belowground traits to adapt the changing environments, and root-associated soil microbes play a crucial role in response, adaptation, resilience adverse environmental conditions. This comprehensive review explores diverse interactions between plants microbes, focusing on of microbiota, with particular emphasis arbuscular mycorrhizal fungi, plant responses How genotype, root traits, growth environments influence these interactions, consequently productivity, are discussed. Recent advances phenotyping, including traditional machine learning-based methods also presented as an innovative tool study characterize root-microbe interactions. Overall, studies highlight importance considering hidden side roots improve nutrition protection context sustainable agriculture face climate change.

Язык: Английский

Процитировано

8

Both the scion and rootstock of grafted grapevines influence the rhizosphere and root endophyte microbiomes, but rootstocks have a greater impact DOI Creative Commons

Vincent Lailheugue,

Romain Darriaut, Joseph Tran

и другие.

Environmental Microbiome, Год журнала: 2024, Номер 19(1)

Опубликована: Апрель 23, 2024

Abstract Background Soil microorganisms play an extensive role in the biogeochemical cycles providing nutrients necessary for plant growth. Root-associated bacteria and fungi, originated from soil, are also known to influence host health. In response environmental stresses, roots exude specific molecules influencing composition functioning of rhizospheric root microbiomes. This is genotype-dependent affected by soil microbiological chemical properties. It essential unravel grapevine rootstock scion genotypes on this microbiome, investigate relationship with growth adaptation its environment. Here, predicted functions microbiome system were studied using metabarcoding ten scion-rootstock combinations, addition nutrition measurements. Results The genotype significantly influenced diversity structure bacterial fungal as well rhizosphere compartments when grafted same cultivar. Based β-diversity analyses, 1103P showed distinct communities compared five others (RGM, SO4, 41B, 3309 C Nemadex). was more variable depending community investigated compartment. Its contribution primarily observed measured fungi both compartments, arbuscular mycorrhizal (AMF) rhizosphere. Significant correlations established between microbial variables phenotype, mineral status petioles roots. Conclusion These results shed light capacity recruit different functional microorganisms, which affect Selecting rootstocks capable associating positive symbiotic tool that can facilitate move towards sustainable viticulture help cope constraints.

Язык: Английский

Процитировано

8

Changes in Microbial Community Diversity and the Formation Mechanism of Flavor Metabolites in Industrial-Scale Spontaneous Fermentation of Cabernet Sauvignon Wines DOI Creative Commons
Chunyan Bai, Bin Fan, Junliang Hao

и другие.

Foods, Год журнала: 2025, Номер 14(2), С. 235 - 235

Опубликована: Янв. 14, 2025

The key flavor compound formation pathways resulting from indigenous microorganisms during the spontaneous fermentation of wine have not been thoroughly described. In this study, high-throughput metagenomic sequencing and untargeted metabolomics were utilized to investigate evolution microbial metabolite profiles in industrial-scale production elucidate mechanisms compounds. Metabolome analysis showed that total amount esters, fatty acids, organic aldehydes, terpenes, flavonoids, non-flavonoids increased gradually fermentation. Enrichment indicated metabolic related synthesis, decomposition, transformation, utilization sugars, amino acids involved compounds wine. Metagenomic revealed Saccharomyces, Hanseniaspora, Zygosaccharomyces, Wickerhamiella, Lactobacillus, Fructobacillus dominant taxa They significantly positively correlated with phenols, phenols. conclusion, research provides new insights into formed by

Язык: Английский

Процитировано

1

Vintage and terroir are the strongest determinants of grapevine carposphere microbiome in the viticultural zone of Drama, Greece DOI Creative Commons
Fotiοs Bekris,

Elena Papadopoulou,

Sotirios Vasileiadis

и другие.

FEMS Microbiology Ecology, Год журнала: 2025, Номер unknown

Опубликована: Янв. 20, 2025

Abstract The role of microbial terroir for enhancing the geographical origin wines is well appreciated. Still, we lack a good understanding assembly mechanisms driving carposphere grapevine microbiota. We investigated cultivar, vintage, units (TUs) and vineyard geographic location on composition carpospheric microbiota three important cultivars in viticultural zone Drama, Greece using amplicon sequencing. Our strategy to define TUs based georeferencing analysis allowed us disentangle effects TU vineyards location, considered as lumped factor most studies date. hypothesized that: (i) these factors contribute differently microbiome that (ii) fungal bacterial communities follow different mechanisms. Vintage were stronger determinants communities, although latter showed weaker response. effect over geography cultivar reinforces viticulture. identified fungi (Cladosporium, Aureobasidium, Alternaria) bacteria (Pseudomonas, Methylobacterium, Sphingomonadaceae) main members core microbiome. These microorganisms associated with specific TUs, feature could be pursued towards new microbiome-modulated paradigm

Язык: Английский

Процитировано

1

Commercial bioinoculants improve colonization but do not alter the arbuscular mycorrhizal fungal community of greenhouse-grown grapevine roots DOI Creative Commons
Mariam Berdeja, Nicole K. Reynolds, Teresa E. Pawlowska

и другие.

Environmental Microbiome, Год журнала: 2025, Номер 20(1)

Опубликована: Янв. 31, 2025

Язык: Английский

Процитировано

1

Management of Rhizosphere Microbiota and Plant Production under Drought Stress: A Comprehensive Review DOI Creative Commons
Catalina Vidal, Felipe González, Christian Santander

и другие.

Plants, Год журнала: 2022, Номер 11(18), С. 2437 - 2437

Опубликована: Сен. 19, 2022

Drought generates a complex scenario worldwide in which agriculture should urgently be reframed from an integrative point of view. It includes the search for new water resources and use tolerant crops genotypes, improved irrigation systems, other less explored alternatives that are very important, such as biotechnological tools may increase efficiency. Currently, large body evidence highlights role specific strains main microbial rhizosphere groups (arbuscular mycorrhizal fungi, yeasts, bacteria) on increasing drought tolerance their host plants through diverse plant growth-promoting (PGP) characteristics. With this background, it is possible to suggest joint distinct PGP microbes could produce positive interactions or additive beneficial effects if co-inoculation does not generate antagonistic responses. To date, have only been partially analyzed by using single omics tools, genomics, metabolomics, proteomics. However, there gap information multi-omics approaches detect between plants. This approach must next scale-jump study interaction soil–plant–microorganism. In review, we constraints posed framework global demand production, integrating important played biota agent. Using understand depth processes occur presence microorganisms can allow us modulate combined drive crop yields, improving production attend growing food.

Язык: Английский

Процитировано

30

Composition and biodiversity of soil and root-associated microbiome in Vitis vinifera cultivar Lambrusco distinguish the microbial terroir of the Lambrusco DOC protected designation of origin area on a local scale DOI Creative Commons

Enrico Nanetti,

Giorgia Palladino, Daniel Scicchitano

и другие.

Frontiers in Microbiology, Год журнала: 2023, Номер 14

Опубликована: Фев. 22, 2023

Wines produced from the same grape cultivars but in different locations possess distinctive qualities leading to consumer's appreciation, preferences, and thus purchase choices. Here, we explore possible importance of microbiomes at soil-plant interface as a determinant terroir properties grapevine production, which confer specific growth performances wine chemo-sensory local scale.In particular, investigated variation microbial communities associated with roots Vitis vinifera cultivar Lambrusco, well surrounding bulk soils, vineyards across "Consorzio Tutela Lambrusco DOC" protected designation origin area (PDO, Emilia Romagna, Italy), considering viticultural sites located both inside outside consortium two seasons (June November 2021).According our findings, rhizospheric soil show significant structural differences relation sampling site, regardless seasonality, while endophytic seem be completely unaffected by such variables. Furthermore, deeper insight into PDO areas highlighted presence some microorganisms enriched characterizing season farming strategy. These include Bacillus, Paenibacillus, Azospirillum, are all well-known plant growth-promoting bacteria.Taken together, results suggest connection between root V. origin, emphasizing potential role PDO-enriched bacteria vine growing final quality DOC wine.

Язык: Английский

Процитировано

17