Frontiers in Plant Science,
Год журнала:
2023,
Номер
14
Опубликована: Авг. 14, 2023
The
rhizosphere
effect
occurring
at
the
root-soil
interface
has
increasingly
been
shown
to
play
a
key
role
in
plant
fitness
and
soil
functionality,
influencing
plants
resilience.
Here,
for
first
time,
we
investigated
whether
rootstock
genotype
on
which
Vitis
vinifera
L.
cultivar
Falanghina
is
grafted
can
influence
microbiome.
Specifically,
evaluated
extent
5BB
1103P
rootstocks
are
able
shape
microbial
diversity
of
environment.
Moreover,
explored
potential
function
community
its
shift
under
influence.
We
seven
vineyards
subjected
same
pedo-climatic
conditions,
similar
age,
training
system
management
collected
twelve
samples
metagenomic
analyses
composite
physical-chemical
properties.
In
this
study,
used
16S
rRNA
gene-based
analysis
investigate
bacterial
composition.
Liner
discriminant
size
(LEFSe)
was
conducted
biomarker
discovery.
functional
composition
sampled
communities
determined
using
PICRUSt,
based
marker
gene
sequencing
profiles.
Soil
involved
determination
texture,
pH,
Cation
Exchange
Capacity
(CSC),
Organic
Carbon
(OC),
electrical
conductivity
(EC),
calcium
(Ca),
magnesium
(Mg),
potassium
(K)
content,
Phosphorous
(P),
nitrogen
(N).
latter
revealed
that
features
were
quite
homogenous.
data
showed
alpha-diversity
(Observed
OTUs)
significantly
increased
microbiota.
Irrespective
cultivar,
Pseudomonadota
dominant
phylum,
followed
by
Actinomycetota
>
Bacteroidota
Thermoproteota.
However,
major
phyla
differentiating
associated
with
different
types.
At
genus
level,
several
taxa
belonging
Alphaproteobacteria
classes
enriched
rhizosphere.
Investigating
profile,
found
most
enzyme-encoding
genes
N
cycling
more
abundant
soil.
C
cycle
Plant
Growth
Promotion
(PGP)
functionality.
Our
results
suggest
not
only
recruit
specific
communities,
but
also
traits
within
Nature Reviews Earth & Environment,
Год журнала:
2024,
Номер
5(4), С. 258 - 275
Опубликована: Март 26, 2024
Climate
change
is
affecting
grape
yield,
composition
and
wine
quality.
As
a
result,
the
geography
of
production
changing.
In
this
Review,
we
discuss
consequences
changing
temperature,
precipitation,
humidity,
radiation
CO2
on
global
explore
adaptation
strategies.
Current
winegrowing
regions
are
primarily
located
at
mid-latitudes
(California,
USA;
southern
France;
northern
Spain
Italy;
Barossa,
Australia;
Stellenbosch,
South
Africa;
Mendoza,
Argentina,
among
others),
where
climate
warm
enough
to
allow
ripening,
but
without
excessive
heat,
relatively
dry
avoid
strong
disease
pressure.
About
90%
traditional
in
coastal
lowland
Spain,
Italy,
Greece
California
could
be
risk
disappearing
by
end
century
because
drought
more
frequent
heatwaves
with
change.
Warmer
temperatures
might
increase
suitability
for
other
(Washington
State,
Oregon,
Tasmania,
France)
driving
emergence
new
regions,
like
United
Kingdom.
The
degree
these
changes
strongly
depends
level
temperature
rise.
Existing
producers
can
adapt
certain
warming
plant
material
(varieties
rootstocks),
training
systems
vineyard
management.
However,
adaptations
not
maintain
economically
viable
all
areas.
Future
research
should
aim
assess
economic
impact
strategies
applied
large
scale.
Grapes
produced
winemaking
highly
susceptible
climate,
particularly
extreme
heat
drought.
This
Review
examines
existing
emerging
recommends
measures
increasing
modified
drought,
pest
Horticulturae,
Год журнала:
2024,
Номер
10(2), С. 154 - 154
Опубликована: Фев. 6, 2024
Soil
health
encompasses
the
effects
uppermost
part
of
land
have
on
human
wellbeing
in
a
broad
sense,
because
soil
is
where
most
food
ultimately
comes
from,
and
it
more
inconspicuously
fulfils
other
ecological
functions,
as
important
feeding,
for
our
planet’s
welfare,
which
ours.
Viticulture
exploits
soil’s
resources
from
wine,
its
valuable
produce,
boasts
to
obtain
some
unique
quality
traits,
are
wrapped
within
terroir
concept.
However,
using
conventional
methods,
viticulture
also
has
harsh
impacts
soil,
thus
jeopardizing
sustainability.
How
long
will
expression
remain
unchanged
vineyard
degradation
goes
on?
While
this
question
difficult
answer
complex
nature
terroirs,
undeniable
that
management
practices
leave,
general,
ample
room
improvement,
their
impact
vineyards
much
environment.
In
response,
must
adopt
enable
long-lasting
preservation
grounds
both
on-farm
off-farm
benefits.
regard,
increase
organic
matter
alongside
enhancement
biological
community
key
they
benefit
many
properties
physical,
chemical,
nature,
determining
healthy
functioning,
vines
may
thrive
time,
whereas
surroundings
minimally
disturbed.
present
review,
importance
relates
discussed,
factors
processes
threaten
winegrowing
areas
presented,
successful
soil-health
shown,
future
research
trends
identified
researchers
stakeholders
special
agricultural
industry.
Trees
are
associated
with
a
broad
range
of
microorganisms
colonising
the
diverse
tissues
their
host.
However,
early
dynamics
microbiota
assembly
from
root
to
shoot
axis
and
how
it
is
linked
exudates
metabolite
contents
remain
unclear.
Here,
we
characterised
fungal
bacterial
communities
altering
as
well
metabolomes
in
parallel
establishment
poplar
cuttings
(Populus
tremula
x
tremuloides
clone
T89)
over
30
days
growth.
Sterile
were
planted
natural
or
gamma
irradiated
soils.
Bulk
rhizospheric
soils,
collected
day
1
track
dynamic
changes
different
habitats
by
DNA
metabarcoding.
Root
metabolites
analysed
gas
chromatography-mass
spectrometry.
Journal of Plant Interactions,
Год журнала:
2024,
Номер
19(1)
Опубликована: Март 11, 2024
Plants
have
evolved
various
belowground
traits
to
adapt
the
changing
environments,
and
root-associated
soil
microbes
play
a
crucial
role
in
response,
adaptation,
resilience
adverse
environmental
conditions.
This
comprehensive
review
explores
diverse
interactions
between
plants
microbes,
focusing
on
of
microbiota,
with
particular
emphasis
arbuscular
mycorrhizal
fungi,
plant
responses
How
genotype,
root
traits,
growth
environments
influence
these
interactions,
consequently
productivity,
are
discussed.
Recent
advances
phenotyping,
including
traditional
machine
learning-based
methods
also
presented
as
an
innovative
tool
study
characterize
root-microbe
interactions.
Overall,
studies
highlight
importance
considering
hidden
side
roots
improve
nutrition
protection
context
sustainable
agriculture
face
climate
change.
Environmental Microbiome,
Год журнала:
2024,
Номер
19(1)
Опубликована: Апрель 23, 2024
Abstract
Background
Soil
microorganisms
play
an
extensive
role
in
the
biogeochemical
cycles
providing
nutrients
necessary
for
plant
growth.
Root-associated
bacteria
and
fungi,
originated
from
soil,
are
also
known
to
influence
host
health.
In
response
environmental
stresses,
roots
exude
specific
molecules
influencing
composition
functioning
of
rhizospheric
root
microbiomes.
This
is
genotype-dependent
affected
by
soil
microbiological
chemical
properties.
It
essential
unravel
grapevine
rootstock
scion
genotypes
on
this
microbiome,
investigate
relationship
with
growth
adaptation
its
environment.
Here,
predicted
functions
microbiome
system
were
studied
using
metabarcoding
ten
scion-rootstock
combinations,
addition
nutrition
measurements.
Results
The
genotype
significantly
influenced
diversity
structure
bacterial
fungal
as
well
rhizosphere
compartments
when
grafted
same
cultivar.
Based
β-diversity
analyses,
1103P
showed
distinct
communities
compared
five
others
(RGM,
SO4,
41B,
3309
C
Nemadex).
was
more
variable
depending
community
investigated
compartment.
Its
contribution
primarily
observed
measured
fungi
both
compartments,
arbuscular
mycorrhizal
(AMF)
rhizosphere.
Significant
correlations
established
between
microbial
variables
phenotype,
mineral
status
petioles
roots.
Conclusion
These
results
shed
light
capacity
recruit
different
functional
microorganisms,
which
affect
Selecting
rootstocks
capable
associating
positive
symbiotic
tool
that
can
facilitate
move
towards
sustainable
viticulture
help
cope
constraints.
Foods,
Год журнала:
2025,
Номер
14(2), С. 235 - 235
Опубликована: Янв. 14, 2025
The
key
flavor
compound
formation
pathways
resulting
from
indigenous
microorganisms
during
the
spontaneous
fermentation
of
wine
have
not
been
thoroughly
described.
In
this
study,
high-throughput
metagenomic
sequencing
and
untargeted
metabolomics
were
utilized
to
investigate
evolution
microbial
metabolite
profiles
in
industrial-scale
production
elucidate
mechanisms
compounds.
Metabolome
analysis
showed
that
total
amount
esters,
fatty
acids,
organic
aldehydes,
terpenes,
flavonoids,
non-flavonoids
increased
gradually
fermentation.
Enrichment
indicated
metabolic
related
synthesis,
decomposition,
transformation,
utilization
sugars,
amino
acids
involved
compounds
wine.
Metagenomic
revealed
Saccharomyces,
Hanseniaspora,
Zygosaccharomyces,
Wickerhamiella,
Lactobacillus,
Fructobacillus
dominant
taxa
They
significantly
positively
correlated
with
phenols,
phenols.
conclusion,
research
provides
new
insights
into
formed
by
FEMS Microbiology Ecology,
Год журнала:
2025,
Номер
unknown
Опубликована: Янв. 20, 2025
Abstract
The
role
of
microbial
terroir
for
enhancing
the
geographical
origin
wines
is
well
appreciated.
Still,
we
lack
a
good
understanding
assembly
mechanisms
driving
carposphere
grapevine
microbiota.
We
investigated
cultivar,
vintage,
units
(TUs)
and
vineyard
geographic
location
on
composition
carpospheric
microbiota
three
important
cultivars
in
viticultural
zone
Drama,
Greece
using
amplicon
sequencing.
Our
strategy
to
define
TUs
based
georeferencing
analysis
allowed
us
disentangle
effects
TU
vineyards
location,
considered
as
lumped
factor
most
studies
date.
hypothesized
that:
(i)
these
factors
contribute
differently
microbiome
that
(ii)
fungal
bacterial
communities
follow
different
mechanisms.
Vintage
were
stronger
determinants
communities,
although
latter
showed
weaker
response.
effect
over
geography
cultivar
reinforces
viticulture.
identified
fungi
(Cladosporium,
Aureobasidium,
Alternaria)
bacteria
(Pseudomonas,
Methylobacterium,
Sphingomonadaceae)
main
members
core
microbiome.
These
microorganisms
associated
with
specific
TUs,
feature
could
be
pursued
towards
new
microbiome-modulated
paradigm
Plants,
Год журнала:
2022,
Номер
11(18), С. 2437 - 2437
Опубликована: Сен. 19, 2022
Drought
generates
a
complex
scenario
worldwide
in
which
agriculture
should
urgently
be
reframed
from
an
integrative
point
of
view.
It
includes
the
search
for
new
water
resources
and
use
tolerant
crops
genotypes,
improved
irrigation
systems,
other
less
explored
alternatives
that
are
very
important,
such
as
biotechnological
tools
may
increase
efficiency.
Currently,
large
body
evidence
highlights
role
specific
strains
main
microbial
rhizosphere
groups
(arbuscular
mycorrhizal
fungi,
yeasts,
bacteria)
on
increasing
drought
tolerance
their
host
plants
through
diverse
plant
growth-promoting
(PGP)
characteristics.
With
this
background,
it
is
possible
to
suggest
joint
distinct
PGP
microbes
could
produce
positive
interactions
or
additive
beneficial
effects
if
co-inoculation
does
not
generate
antagonistic
responses.
To
date,
have
only
been
partially
analyzed
by
using
single
omics
tools,
genomics,
metabolomics,
proteomics.
However,
there
gap
information
multi-omics
approaches
detect
between
plants.
This
approach
must
next
scale-jump
study
interaction
soil–plant–microorganism.
In
review,
we
constraints
posed
framework
global
demand
production,
integrating
important
played
biota
agent.
Using
understand
depth
processes
occur
presence
microorganisms
can
allow
us
modulate
combined
drive
crop
yields,
improving
production
attend
growing
food.
Frontiers in Microbiology,
Год журнала:
2023,
Номер
14
Опубликована: Фев. 22, 2023
Wines
produced
from
the
same
grape
cultivars
but
in
different
locations
possess
distinctive
qualities
leading
to
consumer's
appreciation,
preferences,
and
thus
purchase
choices.
Here,
we
explore
possible
importance
of
microbiomes
at
soil-plant
interface
as
a
determinant
terroir
properties
grapevine
production,
which
confer
specific
growth
performances
wine
chemo-sensory
local
scale.In
particular,
investigated
variation
microbial
communities
associated
with
roots
Vitis
vinifera
cultivar
Lambrusco,
well
surrounding
bulk
soils,
vineyards
across
"Consorzio
Tutela
Lambrusco
DOC"
protected
designation
origin
area
(PDO,
Emilia
Romagna,
Italy),
considering
viticultural
sites
located
both
inside
outside
consortium
two
seasons
(June
November
2021).According
our
findings,
rhizospheric
soil
show
significant
structural
differences
relation
sampling
site,
regardless
seasonality,
while
endophytic
seem
be
completely
unaffected
by
such
variables.
Furthermore,
deeper
insight
into
PDO
areas
highlighted
presence
some
microorganisms
enriched
characterizing
season
farming
strategy.
These
include
Bacillus,
Paenibacillus,
Azospirillum,
are
all
well-known
plant
growth-promoting
bacteria.Taken
together,
results
suggest
connection
between
root
V.
origin,
emphasizing
potential
role
PDO-enriched
bacteria
vine
growing
final
quality
DOC
wine.