AlphaPulldown2 – A General Pipeline for High-Throughput Structural Modeling DOI Creative Commons
Dmitry Molodenskiy, Valentin Maurer, Dingquan Yu

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 3, 2024

Abstract AlphaPulldown2 streamlines protein structural modeling by automating workflows, improving code adaptability, and optimizing data management for large-scale applications. It introduces an automated Snakemake pipeline, compressed storage, support additional backends like UniFold AlphaLink2, a range of other improvements. These upgrades make versatile platform predicting both binary interactions complex multi-unit assemblies. Availability is freely available at https://github.com/KosinskiLab/AlphaPulldown .

Язык: Английский

Salivary Biomarkers in Breast Cancer: From Salivaomics to Salivaoncoomics DOI Creative Commons
Lyudmila V. Bel’skaya,

Elena I. Dyachenko

Frontiers in Bioscience-Landmark, Год журнала: 2024, Номер 29(7)

Опубликована: Июль 17, 2024

Saliva is a promising biological fluid for the diagnosis and monitoring of diseases, including breast cancer. To study composition saliva, complex "omics" technologies used: genomics, transcriptomics, proteomics, metabolomics microbiomics. In this review, we systematized all known in their application to saliva analysis cancer order understand how complete picture provided by combination different areas research identify missing links. It has been shown that studies are chaotic unsystematic. Inconsistency sample sizes high heterogeneity were identified. The main tasks need be solved harmonious development salivaomics new direction-"salivaonkoomics" formulated. Thus, it necessary systematize unify biomarkers within each area "omics", size its homogeneity, list methods approaches, biomarkers, reproducibility results, ability transfer results other samples. important expand number components adding (for example, spectralomics, etc.), as well studying relationships between (interactomics). All together will allow not only but also many pathologies qualitatively level.

Язык: Английский

Процитировано

2

Structural characteristics and anti-tumor activity of alcohol-precipitated polysaccharides from Cordyceps militaris under different ethanol concentrations DOI
Keyao Dai,

Ruo-Han Wang,

Lan Mu

и другие.

International Journal of Biological Macromolecules, Год журнала: 2024, Номер 278, С. 134784 - 134784

Опубликована: Авг. 14, 2024

Язык: Английский

Процитировано

1

Recent Advances in Mass Spectrometry-based Protein Interactome Studies DOI Creative Commons
Shaowen Wu, Sheng Zhang, Chunming Liu

и другие.

Molecular & Cellular Proteomics, Год журнала: 2024, Номер unknown, С. 100887 - 100887

Опубликована: Ноя. 1, 2024

Язык: Английский

Процитировано

1

AlphaPulldown2 – A General Pipeline for High-Throughput Structural Modeling DOI Creative Commons
Dmitry Molodenskiy, Valentin Maurer, Dingquan Yu

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 3, 2024

Abstract AlphaPulldown2 streamlines protein structural modeling by automating workflows, improving code adaptability, and optimizing data management for large-scale applications. It introduces an automated Snakemake pipeline, compressed storage, support additional backends like UniFold AlphaLink2, a range of other improvements. These upgrades make versatile platform predicting both binary interactions complex multi-unit assemblies. Availability is freely available at https://github.com/KosinskiLab/AlphaPulldown .

Язык: Английский

Процитировано

0