Increasing the efficiency of CRISPR/Cas9-mediated genome editing in the citrus postharvest pathogen Penicillium digitatum DOI Creative Commons
Carolina Ropero‐Pérez, José F. Marcos, Paloma Manzanares

и другие.

Fungal Biology and Biotechnology, Год журнала: 2024, Номер 11(1)

Опубликована: Июль 13, 2024

Abstract Background Penicillium digitatum is a fungal plant pathogen that causes the green mold disease in harvested citrus fruits. Due to its economical relevance, many efforts have focused on development of genetic engineering tools for this fungus. Adaptation CRISPR/Cas9 technology was previously accomplished with self-replicative AMA1-based plasmids marker-free gene editing, but resulting efficiency (10%) limited practical implementation. In study, we aimed enhance CRISPR/Cas9-mediated editing P. facilitate use. Results Increasing culture time by performing additional streaks under selection conditions medium promotes slower growth rates significantly improved up 54–83%. To prove this, disrupted five candidate genes were chosen based our previous high-throughput expression studies at elucidating transcriptomic response antifungal protein PdAfpB. Two these lead visual phenotypic changes (PDIG_53730/ pksP , and PDIG_54100/ arp2 ) allowed start protocol optimization. The other three candidates (PDIG_56860, PDIG_33760/ rodA PDIG_68680/ dfg5 had no visually associated phenotype targeted confirm high protocol. Conclusion Genome increased from 10% 83% through modification methodology, which demonstrates feasibility system disruption phytopathogenic Moreover, approach described study might help increase efficiencies economically relevant species via still low.

Язык: Английский

Harnessing genetic engineering to drive economic bioproduct production in algae DOI Creative Commons
Abhishek Gupta, Kalisa Kang, Ruchi Pathania

и другие.

Frontiers in Bioengineering and Biotechnology, Год журнала: 2024, Номер 12

Опубликована: Янв. 29, 2024

Our reliance on agriculture for sustenance, healthcare, and resources has been essential since the dawn of civilization. However, traditional agricultural practices are no longer adequate to meet demands a burgeoning population amidst climate-driven challenges. Microalgae emerge as beacon hope, offering sustainable renewable source food, animal feed, energy. Their rapid growth rates, adaptability non-arable land non-potable water, diverse bioproduct range, encompassing biofuels nutraceuticals, position them cornerstone future resource management. Furthermore, microalgae’s ability capture carbon aligns with environmental conservation goals. While microalgae offers significant benefits, obstacles in cost-effective biomass production persist, which curtails broader application. This review examines compared other host platforms, highlighting current innovative approaches aimed at overcoming existing barriers. These include range techniques, from gene editing, synthetic promoters, mutagenesis selective breeding metabolic engineering through transcription factors.

Язык: Английский

Процитировано

18

Review on mushroom mycelium-based products and their production process: from upstream to downstream DOI Creative Commons
Hyun‐Jae Shin, Hyeon-Su Ro, Moriyuki Kawauchi

и другие.

Bioresources and Bioprocessing, Год журнала: 2025, Номер 12(1)

Опубликована: Янв. 10, 2025

Abstract The global trend toward carbon neutrality and sustainability calls for collaborative efforts in both the basic applied research sectors to utilize mushroom mycelia as environmentally friendly sustainable materials. Fungi, along with animals plants, are one of major eukaryotic life forms. They have long been utilized traditional biotechnology sectors, such food fermentation, antibiotic production, industrial enzyme production. Some fungi also consumed crops, fruiting bodies various mushrooms. Recently, new trends emerged, shifting from applications towards innovative use mycelium eco-friendly bioresources. This approach has gained attention development alternative meats, mycofabrication biocomposites, production mycelial leather fabrics. These aim replace animal husbandry recycle agricultural waste construction electrical paper reviews current on mycelia, covering strain improvements molecular breeding well products processes. Key findings, practical considerations, valorization discussed. Graphical

Язык: Английский

Процитировано

2

Fungal Engineered Living Materials: The Viability of Pure Mycelium Materials with Self‐Healing Functionalities DOI
Elise Elsacker, Meng Zhang, Martyn Dade‐Robertson

и другие.

Advanced Functional Materials, Год журнала: 2023, Номер 33(29)

Опубликована: Апрель 11, 2023

Abstract Engineered living materials (ELMs) composed entirely of fungal cells offer significant potential due to their functional properties such as self‐assembly, sensing, and self‐healing. Alongside rapid developments in the ELM field, there is growing interest mycelium materials, which are made from vegetative part filamentous fungi, a source advanced materials. In order advance development ELMs that utilize organism's ability regenerate self‐repair, new methods for controlling optimizing needed, well better understanding biological mechanisms behind regeneration. this study, pure fabricated use leather substitutes, it found chlamydospores, thick‐walled formed at hyphal tip, may be key material's self‐healing properties. The results suggest can survive dry oligotrophic environments, possible with minimal intervention after two‐day recovery period. Finally, study characterizes mechanical physical damaged healed samples, allowing first characterization ELMs.

Язык: Английский

Процитировано

38

Sustainable Mycelium-Bound Biocomposites: Design Strategies, Materials Properties, and Emerging Applications DOI
Joseph Kinyanjui Muiruri, Jayven Chee Chuan Yeo, Qiang Zhu

и другие.

ACS Sustainable Chemistry & Engineering, Год журнала: 2023, Номер 11(18), С. 6801 - 6821

Опубликована: Апрель 26, 2023

Extrication from the use of fossil-based products has grown more critical in recent years. This disengagement been driven by deliberate environmental campaigns focusing on climate change and global warming threats their consequences to humanity. As such, innovative replacements for products, primarily biobased materials, have recently considerable interest. Among mycelium-bound biocomposites enhanced biologically or nontoxic additives are one most creative ecofriendly solutions because it fulfills three pillars sustainable development with positive impacts via circular economy design principles. In this review, potential is elucidated comprehensively covering state-of-the-art production strategies (variety species, substrates, additives, growth conditions) postprocessing techniques resulting advanced material features. review also covers intriguing growing areas applications biocomposites, as well future outlook circularity sustainability.

Язык: Английский

Процитировано

37

Aspergillus oryzae as a Cell Factory: Research and Applications in Industrial Production DOI Creative Commons
Zeao Sun, Yijian Wu,

Shihua Long

и другие.

Journal of Fungi, Год журнала: 2024, Номер 10(4), С. 248 - 248

Опубликована: Март 26, 2024

Aspergillus oryzae, a biosafe strain widely utilized in bioproduction and fermentation technology, exhibits robust hydrolytic enzyme secretion system. Therefore, it is frequently employed as cell factory for industrial production. Moreover, A. oryzae has the ability to synthesize various secondary metabolites, such kojic acid L-malic acid. Nevertheless, complex system protein expression regulation mechanism of pose challenges expressing numerous heterologous products. By leveraging synthetic biology novel genetic engineering techniques, emerged an ideal candidate constructing factories. In this review, we provide overview latest advancements application oryzae-based factories These studies suggest that metabolic optimization are key elements realizing widespread It anticipated review will pave way more effective approaches research avenues future implementation

Язык: Английский

Процитировано

15

Open-endedness in synthetic biology: A route to continual innovation for biological design DOI Creative Commons
Michiel Stock, Thomas E. Gorochowski

Science Advances, Год журнала: 2024, Номер 10(3)

Опубликована: Янв. 19, 2024

Design in synthetic biology is typically goal oriented, aiming to repurpose or optimize existing biological functions, augmenting with new-to-nature capabilities, creating life-like systems from scratch. While the field has seen many advances, bottlenecks complexity of built are emerging and designs that function lab often fail when used real-world contexts. Here, we propose an open-ended approach design, novelty designed being at least as important how well it fulfils its goal. Rather than solely focusing on optimization toward a single best designing mind may allow us move beyond diminishing returns see performance for most engineered biology. Research artificial life community demonstrated embracing can automatically generate innovative unexpected solutions challenging problems local optima. Synthetic offers ideal playground explore more creative approaches design.

Язык: Английский

Процитировано

9

Current utilization technologies and products of antibiotic fermentation residues: A review DOI

Senan Alsaeedi,

Beibei Yan, Zhi Wang

и другие.

Journal of environmental chemical engineering, Год журнала: 2025, Номер unknown, С. 116182 - 116182

Опубликована: Март 1, 2025

Язык: Английский

Процитировано

1

Exploring the Application and Prospects of Synthetic Biology in Engineered Living Materials DOI
Qiwen Wang, Zhehui Hu, Zhixuan Li

и другие.

Advanced Materials, Год журнала: 2023, Номер unknown

Опубликована: Сен. 7, 2023

At the intersection of synthetic biology and materials science, engineered living (ELMs) exhibit unprecedented potential. Possessing unique "living" attributes, ELMs represent a significant paradigm shift in material design, showcasing self-organization, self-repair, adaptability, evolvability, surpassing conventional materials. This review focuses on reviewing applications derived from bacteria, fungi, plants environmental remediation, eco-friendly architecture, sustainable energy. The provides comprehensive overview latest research progress emerging design strategies for various application fields perspectives science. In addition, valuable references novel ELMs, extending potential future ELMs. investigation into synergistic possibilities amongst different species offers beneficial reference information researchers practitioners this field. Finally, trends development challenges coming years are discussed detail.

Язык: Английский

Процитировано

19

Current Advances in the Functional Genes of Edible and Medicinal Fungi: Research Techniques, Functional Analysis, and Prospects DOI Creative Commons
Wenyun Li, Gen Zou, Dapeng Bao

и другие.

Journal of Fungi, Год журнала: 2024, Номер 10(5), С. 311 - 311

Опубликована: Апрель 25, 2024

Functional genes encode various biological functions required for the life activities of organisms. By analyzing functional edible and medicinal fungi, varieties fungi can be improved to enhance their agronomic traits, growth rates, ability withstand adversity, thereby increasing yield quality promoting industrial development. With rapid development gene research technology publication many whole-genome sequences related important traits have been mined, located, functionally analyzed. This paper summarizes advantages disadvantages different techniques application examples fungi; systematically reviews progress in processes such as mating type, mycelium fruit development, substrate utilization nutrient transport, environmental response, synthesis regulation active substances; proposes future directions fungi. The overall aim this study was provide a valuable reference further molecular breeding with high promote wide products food, medicine, industry.

Язык: Английский

Процитировано

6

Beyond Penicillin: The Potential of Filamentous Fungi for Drug Discovery in the Age of Antibiotic Resistance DOI Creative Commons
João Correia, Anabela Borges, Manuel Simões

и другие.

Antibiotics, Год журнала: 2023, Номер 12(8), С. 1250 - 1250

Опубликована: Июль 29, 2023

Antibiotics are a staple in current medicine for the therapy of infectious diseases. However, their extensive use and misuse, combined with high adaptability bacteria, has dangerously increased incidence multi-drug-resistant (MDR) bacteria. This makes treatment infections challenging, especially when MDR bacteria form biofilms. The most recent antibiotics entering market have very similar modes action to existing ones, so rapidly catch up those as well. As such, it is important adopt effective measures avoid development antibiotic resistance by pathogenic but also perform bioprospecting new molecules from diverse sources expand arsenal drugs that available fight these Filamentous fungi large vastly unexplored secondary metabolome rich bioactive can be potential novel antimicrobial drugs. Their production associated biosynthetic pathways may not active under standard culture conditions. New techniques involving metabolic genetic engineering help boost production. study aims review bioprospection produce face growing problem biofilm-associated infections.

Язык: Английский

Процитировано

16