CRISPR/Cas and Argonaute-Based Biosensors for Pathogen Detection DOI

Zhiruo Yang,

Siying Mao,

Lu Wang

и другие.

ACS Sensors, Год журнала: 2023, Номер 8(10), С. 3623 - 3642

Опубликована: Окт. 11, 2023

Over the past few decades, pathogens have posed a threat to human security, and rapid identification of should be one ideal methods prevent major public health security outbreaks. Therefore, there is an urgent need for highly sensitive specific approaches identify quantify pathogens. Clustered Regularly Interspaced Short Palindromic Repeats CRISPR/Cas systems Argonaute (Ago) belong Microbial Defense Systems (MDS). The guided, programmable, targeted activation nucleases by both them leading way new generation detection. We compare these two in terms similarities differences. In addition, we discuss future challenges prospects development biosensors, especially electrochemical biosensors. This review expected afford researchers entering this multidisciplinary field useful guidance provide inspiration more innovative biosensors

Язык: Английский

CRISPR-Cas12a-Powered Dual-Mode Biosensor for Ultrasensitive and Cross-validating Detection of Pathogenic Bacteria DOI
Long Ma, Lei Peng, Lijuan Yin

и другие.

ACS Sensors, Год журнала: 2021, Номер 6(8), С. 2920 - 2927

Опубликована: Июль 19, 2021

Pathogenic bacteria infection severely threatens human health and causes substantial medical financial concern. Rapid, sensitive, specific, reliable detection of pathogenic is crucial. In the current study, a CRISPR-Cas12a-powered dual-mode biosensor was developed for ultrasensitive cross-validating bacteria. Simply, amplicons Salmonella (used as model)-specific invA sequence triggered CRISPR-Cas12a-based indiscriminate degradation single-stranded DNAs that were supposed to link two gold nanoparticle (AuNP) probe pairs, inducing an aggregation-to-dispersion change. This generated observable color changes became even more apparent after centrifugation. The can be discerned by naked eyes recorded using portable colorimeter. Meanwhile, photothermal effect CRISPR-Cas12-powered AuNPs explored first time through 808 nm near-infrared irradiation such quantitative measurement carried out recording temperatures thermal camera. For both modes, limit 1 CFU/mL dynamic range from 100 108 obtained, which comparable with or better than previously reported methods. Our proposed demonstrated satisfactory selectivity against other interfering cells. Furthermore, this proved capable in food samples. Regarding real applications, result each mode used cross-validation. Only case having doubly confirmed positive negative results assured, rendered dependable biosensing conclusion. technology not only expands reach CRISPR-Cas system but also provides general method sensing desirable sensitivity, specificity, capacity.

Язык: Английский

Процитировано

146

A CRISPR-based and post-amplification coupled SARS-CoV-2 detection with a portable evanescent wave biosensor DOI Open Access
Yihan Yang,

Jinchuan Liu,

Xiaohong Zhou

и другие.

Biosensors and Bioelectronics, Год журнала: 2021, Номер 190, С. 113418 - 113418

Опубликована: Июнь 7, 2021

Язык: Английский

Процитировано

133

Novel non-nucleic acid targets detection strategies based on CRISPR/Cas toolboxes: A review DOI
X. Cheng, Yaru Li,

Jun Kou

и другие.

Biosensors and Bioelectronics, Год журнала: 2022, Номер 215, С. 114559 - 114559

Опубликована: Июль 13, 2022

Язык: Английский

Процитировано

128

A smartphone-based visual biosensor for CRISPR-Cas powered SARS-CoV-2 diagnostics DOI Open Access
Long Ma, Lijuan Yin, Xiaoyan Li

и другие.

Biosensors and Bioelectronics, Год журнала: 2021, Номер 195, С. 113646 - 113646

Опубликована: Сен. 23, 2021

Язык: Английский

Процитировано

124

Signal amplification and output of CRISPR/Cas-based biosensing systems: A review DOI
Siyuan Wang, Yichen Du, Dongxia Wang

и другие.

Analytica Chimica Acta, Год журнала: 2021, Номер 1185, С. 338882 - 338882

Опубликована: Июль 26, 2021

Язык: Английский

Процитировано

114

DropCRISPR: A LAMP-Cas12a based digital method for ultrasensitive detection of nucleic acid DOI
Hui Wu, Xiaobao Cao, Yingchao Meng

и другие.

Biosensors and Bioelectronics, Год журнала: 2022, Номер 211, С. 114377 - 114377

Опубликована: Май 18, 2022

Язык: Английский

Процитировано

73

Chemiluminescence Sensor for miRNA-21 Detection Based on CRISPR-Cas12a and Cation Exchange Reaction DOI
Yanmei Zhou,

Shupu Xie,

Bo Liu

и другие.

Analytical Chemistry, Год журнала: 2023, Номер 95(6), С. 3332 - 3339

Опубликована: Янв. 30, 2023

Herein, a chemiluminescence (CL) biosensor based on CRISPR-Cas12a and cation exchange reaction was constructed to detect the biomarker microRNA-21 (miRNA-21). The rolling circle amplification (RCA) introduced convert each target RNA strand into long single-stranded DNA with repeated sequences, which acted as triggers initiate transcleavage activity of CRISPR-Cas12a. activated Cas12a could cleave biotinylated linker CuS nanoparticles (NPs) inhibit binding NPs streptavidin immobilized surface microplate, strongly reduced generation Cu2+ from between AgNO3, thus efficiently suppressed CL Cu2+-luminol-H2O2 system, giving "signal off" biosensor. With multiple amplification, detection limit developed sensor for miRNA-21 reached 16 aM. In addition, this is not only suitable professional instrument but also smartphone used tool purpose portable low-cost assay. This method be specifically quite low level in human serum samples various cancer cells, indicating its potential ultrasensitive molecular diagnostics.

Язык: Английский

Процитировано

54

Topological barrier to Cas12a activation by circular DNA nanostructures facilitates autocatalysis and transforms DNA/RNA sensing DOI Creative Commons
Fei Deng, Yi Li, Biyao Yang

и другие.

Nature Communications, Год журнала: 2024, Номер 15(1)

Опубликована: Март 5, 2024

Abstract Control of CRISPR/Cas12a trans -cleavage is crucial for biosensor development. Here, we show that small circular DNA nanostructures which partially match guide RNA sequences only minimally activate Cas12a ribonucleoproteins. However, linearizing these structures restores activation. Building on this finding, an Autocatalytic Circular Amplification Reaction (AutoCAR) system established allows a single nucleic acid target to multiple ribonucleoproteins, and greatly increases the achievable reporter cleavage rates per target. A rate-equation-based model explains observed near-exponential rate trends. Autocatalysis also sustained with modified fluorophore-quencher pairs achieving 1 aM level (<1 copy/μL) detection (10 6 times improvement), without additional amplification, within 15 min, at room temperature. The range tuneable, spanning 3 11 orders magnitude. We demonstrate SNP mutations in circulating tumor from blood plasma, genomic ( H. Pylori ) (SARS-CoV-2) reverse transcription as well colorimetric lateral flow tests cancer ~100 sensitivity.

Язык: Английский

Процитировано

54

Advancements in CRISPR-Based Biosensing for Next-Gen Point of Care Diagnostic Application DOI Creative Commons

Akash Kumaran,

Nathan Jude Serpes,

Tisha Gupta

и другие.

Biosensors, Год журнала: 2023, Номер 13(2), С. 202 - 202

Опубликована: Янв. 29, 2023

With the move of molecular tests from diagnostic labs to on-site testing becoming more common, there is a sudden rise in demand for nucleic acid-based tools that are selective, sensitive, flexible terrain changes, and cost-effective assist point-of-care systems large-scale screening be used remote locations cases outbreaks pandemics. CRISPR-based biosensors comprise promising new approach acid detection, which uses Cas effector proteins (Cas9, Cas12, Cas13) as extremely specialized identification components may conjunction with variety readout approaches (such fluorescence, colorimetry, potentiometry, lateral flow assay, etc.) onsite analysis. In this review, we cover some technical aspects integrating CRISPR system traditional biosensing methods amplification technologies such polymerase chain reaction (PCR), loop-mediated isothermal (LAMP), recombinase (RPA) continue elaborate on prospects developed biosensor detection major viral bacterial diseases. Within scope article, also discuss recent COVID pandemic numerous have undergone development since its advent. Finally, challenges future testing.

Язык: Английский

Процитировано

47

Research progress on detection of foodborne pathogens: The more rapid and accurate answer to food safety DOI
Run-Jian Gao,

Xinxin Liu,

Zhiqiang Xiong

и другие.

Food Research International, Год журнала: 2024, Номер 193, С. 114767 - 114767

Опубликована: Июль 29, 2024

Язык: Английский

Процитировано

29