Journal of the American Chemical Society,
Год журнала:
2020,
Номер
142(33), С. 14117 - 14124
Опубликована: Июль 22, 2020
To
understand
the
role
of
intracellular
metabolites
in
cellular
processes,
it
is
important
to
measure
dynamics
and
fluxes
small
molecules
living
cells.
Although
conventional
metabolite
sensors
composed
fluorescent
proteins
have
been
made
detect
some
metabolites,
an
emerging
approach
use
genetically
encoded
RNA.
Because
ability
rapidly
generate
metabolite-binding
RNA
aptamers,
RNA-based
potential
be
designed
more
readily
than
protein-based
sensors.
Numerous
strategies
developed
convert
green-fluorescent
Spinach
or
Broccoli
fluorogenic
aptamers
into
metabolite-regulated
Nevertheless,
red
fluorescence
particularly
desirable
because
low
level
background
However,
variant
aptamer,
Red
Broccoli,
does
not
exhibit
cells
when
imaged
with
its
cognate
fluorophore.
It
known
why
vitro
but
live
mammalian
Here,
we
develop
a
new
fluorophore,
OBI
(3,5-difluoro-4-hydroxybenzylidene-imidazolinone-2-oxime-1-benzoimidazole),
which
binds
high
affinity
makes
resistant
thermal
unfolding.
We
show
that
enables
detected
Furthermore,
can
fused
S-adenosyl
methionine
(SAM)-binding
aptamer
sensor
imaging
SAM
These
results
reveal
functions
Chemical Society Reviews,
Год журнала:
2019,
Номер
48(8), С. 2422 - 2457
Опубликована: Янв. 1, 2019
Fluorescent
nanoclusters
are
an
emerging
class
of
modular
nanomaterials.
This
review
highlights
recent
developments
in
tailoring
the
photo-luminescence
nanoclusters.
Chemical Society Reviews,
Год журнала:
2017,
Номер
47(3), С. 1044 - 1097
Опубликована: Дек. 18, 2017
This
review
provides
a
state-of-the-art
account
of
photochromism
into
diverse
functional
nanosystems
such
as
nanomachines,
nanoparticles,
nanoelectronics,
nanoassemblies
and
biological
nanosystems.
Chemical Reviews,
Год журнала:
2018,
Номер
118(15), С. 7293 - 7361
Опубликована: Июль 24, 2018
Understanding
the
properties
of
electronically
excited
states
is
a
challenging
task
that
becomes
increasingly
important
for
numerous
applications
in
chemistry,
molecular
physics,
biology,
and
materials
science.
A
substantial
impact
exerted
by
fascinating
progress
time-resolved
spectroscopy,
which
leads
to
strongly
growing
demand
theoretical
methods
describe
characteristic
features
accurately.
Whereas
electronic
ground
state
problems
stable
molecules
quantum
chemical
methodology
now
so
well
developed
informed
nonexperts
can
use
it
efficiently,
situation
entirely
different
concerning
investigation
states.
This
review
devoted
specific
class
approaches,
usually
denoted
as
multireference
(MR)
methods,
generality
needed
solving
many
spectroscopic
or
photodynamical
problems.
However,
understanding
proper
application
these
MR
often
found
be
difficult
due
their
complexity
computational
cost.
The
purpose
this
provide
an
overview
most
facts
about
approaches
available
present
means
collection
examples
useful
information,
guide
reader
performing
own
applications.
Chemical Reviews,
Год журнала:
2017,
Номер
117(22), С. 13502 - 13565
Опубликована: Окт. 30, 2017
Ultrafast
processes
in
light-absorbing
proteins
have
been
implicated
the
primary
step
light-to-energy
conversion
and
initialization
of
photoresponsive
biological
functions.
Theory
computations
played
an
instrumental
role
understanding
molecular
mechanism
such
processes,
as
they
provide
a
molecular-level
insight
structural
electronic
changes
at
ultrafast
time
scales
that
often
are
very
difficult
or
impossible
to
obtain
from
experiments
alone.
Among
theoretical
strategies,
application
hybrid
quantum
mechanics
(QM/MM)
models
is
important
approach
has
reached
evident
degree
maturity,
resulting
several
contributions
field.
This
review
presents
overview
state-of-the-art
computational
studies
on
subnanosecond
events
rhodopsins,
photoactive
yellow
proteins,
phytochromes,
some
other
where
photoinduced
double-bond
isomerization
occurs.
The
also
discusses
current
limitations
need
be
solved
future
developments.
Chemical Reviews,
Год журнала:
2021,
Номер
121(15), С. 9243 - 9358
Опубликована: Июль 20, 2021
Research
related
to
the
development
and
application
of
luminescent
nanoparticles
(LNPs)
for
chemical
biological
analysis
imaging
is
flourishing.
Novel
materials
new
applications
continue
be
reported
after
two
decades
research.
This
review
provides
a
comprehensive
heuristic
overview
this
field.
It
targeted
both
newcomers
experts
who
are
interested
in
critical
assessment
LNP
materials,
their
properties,
strengths
weaknesses,
prospective
applications.
Numerous
cataloged
by
fundamental
descriptions
identities
physical
morphology,
quantitative
photoluminescence
(PL)
PL
mechanisms,
surface
chemistry.
These
include
various
semiconductor
quantum
dots,
carbon
nanotubes,
graphene
derivatives,
nanodiamonds,
metal
nanoclusters,
lanthanide-doped
upconversion
downshifting
nanoparticles,
triplet–triplet
annihilation
persistent-luminescence
conjugated
polymer
semiconducting
multi-nanoparticle
assemblies,
doped
labeled
including
but
not
limited
those
based
on
polymers
silica.
As
an
exercise
these
ranked
several
application-related
functional
criteria.
Additional
sections
highlight
recent
examples
advances
analysis,
point-of-care
diagnostics,
cellular,
tissue,
vivo
theranostics.
drawn
from
literature
organized
material
particular
properties
that
leveraged
advantage.
Finally,
perspective
what
comes
next
field
offered.
Methods and Applications in Fluorescence,
Год журнала:
2018,
Номер
6(2), С. 022003 - 022003
Опубликована: Фев. 9, 2018
Ever
since
the
inception
of
light
microscopy,
laws
physics
have
seemingly
thwarted
every
attempt
to
visualize
processes
life
at
its
most
fundamental,
sub-cellular,
level.
The
diffraction
limit
has
restricted
our
view
length
scales
well
above
250
nm
and
in
doing
so,
severely
compromised
ability
gain
true
insights
into
many
biological
systems.
Fortunately,
continuous
advancements
optics,
electronics
mathematics
provided
means
once
again
make
work
advantage.
Even
though
some
fundamental
concepts
enabling
super-resolution
microscopy
been
known
for
quite
time,
practically
feasible
implementations
long
remained
elusive.
It
should
therefore
not
come
as
a
surprise
that
2014
Nobel
Prize
Chemistry
was
awarded
scientists
who,
each
their
own
way,
contributed
transforming
from
technological
tour
de
force
staple
biologist's
toolkit.
By
overcoming
barrier,
could
be
established
an
indispensable
tool
age
where
importance
understanding
molecular
level
cannot
overstated.
This
review
strives
provide
aspiring
science
researcher
with
introduction
optical
starting
governing
compound
fluorescent
confocal
current
state-of-the-art
techniques
applications.
Annual Review of Biophysics,
Год журнала:
2019,
Номер
48(1), С. 19 - 44
Опубликована: Фев. 20, 2019
Many
proteins
can
be
split
into
fragments
that
spontaneously
reassemble,
without
covalent
linkage,
a
functional
protein.
For
green
fluorescent
(GFPs),
fragment
reassembly
leads
to
readout,
which
has
been
widely
used
investigate
protein–protein
interactions.
We
review
the
scope
and
limitations
of
this
approach
as
well
other
diverse
applications
GFPs
versatile
sensors,
molecular
glues,
optogenetic
tools,
platforms
for
photophysical
studies.
Chemical Reviews,
Год журнала:
2018,
Номер
118(7), С. 4071 - 4113
Опубликована: Март 21, 2018
The
applications
of
multiscale
quantum–classical
(QM–MM)
approaches
have
shown
an
extraordinary
expansion
and
diversification
in
the
last
couple
decades.
A
great
proportion
these
efforts
been
devoted
to
interpreting
reproducing
spectroscopic
experiments
a
variety
complex
environments
such
as
solutions,
interfaces,
biological
systems.
Today,
QM–MM-based
computational
spectroscopy
methods
constitute
accomplished
tools
with
refined
predictive
power.
present
review
summarizes
advances
that
made
QM–MM
UV–visible,
Raman,
IR,
NMR,
electron
paramagnetic
resonance,
Mössbauer
spectroscopies,
providing
every
case
introductory
discussion
corresponding
methodological
background.
representative
number
are
presented
illustrate
historical
evolution
state
art
this
field,
highlighting
advantages
limitations
available
methodologies.
Finally,
we
our
view
perspectives
open
challenges
field.
BBA Advances,
Год журнала:
2023,
Номер
3, С. 100091 - 100091
Опубликована: Янв. 1, 2023
Emission
fluorescence
is
one
of
the
most
versatile
and
powerful
biophysical
techniques
used
in
several
scientific
subjects.
It
extensively
applied
studies
proteins,
their
conformations,
intermolecular
contacts,
such
as
protein-ligand
protein-protein
interactions,
allowing
qualitative,
quantitative,
structural
data
elucidation.
This
review,
aimed
to
outline
some
widely
this
area,
illustrate
applications
display
a
few
examples.
At
first,
on
intrinsic
proteins
disclosed,
mainly
tryptophan
side
chain.
Predominantly,
research
study
protein
conformational
changes,
changes
intensities
shifts
emission
maximums
were
discussed.
Fluorescence
anisotropy
or
polarization
measurement
changing
orientation
molecule
space,
concerning
time
between
absorption
events.
Absorption
indicate
spatial
alignment
molecule's
dipoles
relative
electric
vector
electromagnetic
wave
excitation
emitted
light,
respectively.
In
other
words,
if
fluorophore
population
excited
with
vertically
polarized
light
will
retain
based
how
fast
it
rotates
solution.
Therefore,
can
be
successfully
interaction
investigations.
Then,
green
fluorescent
(GFPs),
photo-transformable
(FPs)
photoswitchable
photoconvertible
FPs,
those
Large
Stokes
Shift
(LSS)
are
disclosed
more
detail.
FPs
potent
tools
for
biological
systems.
Their
versatility
wide
range
colours
properties
allow
many
applications.
Finally,
application
life
sciences
exposed,
especially
microscopy
super-resolution
that
enables
precise
vivo
photolabeling
monitor
movement
interactions
target
proteins.
Nature Communications,
Год журнала:
2024,
Номер
15(1)
Опубликована: Апрель 2, 2024
Abstract
Near-infrared-I/II
fluorescent
proteins
(NIR-I/II
FPs)
are
crucial
for
in
vivo
imaging,
yet
the
current
NIR-I/II
FPs
face
challenges
including
scarcity,
requirement
chromophore
maturation,
and
limited
emission
wavelengths
(typically
<
800
nm).
Here,
we
utilize
synthetic
protein-seeking
NIR-II
dyes
as
chromophores,
which
covalently
bind
to
tag
(e.g.,
human
serum
albumin,
HSA)
through
a
site-specific
nucleophilic
substitution
reaction,
thereby
creating
proof-of-concept
biomimetic
FPs.
This
chemogenic
strategy
can
be
accomplished
under
gentle
physiological
conditions
without
catalysis.
Proteomics
analysis
identifies
specific
binding
site
(Cys
477
on
DIII).
significantly
enhance
brightness
photostability,
while
improving
biocompatibility,
allowing
high-performance
lymphography
angiography.
is
universal
applicable
wide
range
of
spectrally
separated
real-time
visualization
multiple
biological
events.
Overall,
this
straightforward
approach
holds
potential
transform
protein-based
bioimaging
enables
in-situ
albumin
targeting
create
deep-tissue
imaging
live
organisms.